Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002144

Physical Location & Seq

Genomic Coordinates Forward (+)

8210377 .. 8211539

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAAGCATTGGTGAGGGGGCTAAAACTTCCTAATCAAATAGTAGCTTACTTGATGAACAAGCAAATAAGTGATGAAACTGCAGATCTAGAATGGGAGAAACTAGTACGAGAGTTGTCAAATAAAGGCATGTGTAAGAATTGTGTTGTTGTGTGTGACATGCCGAGCATGAAAGGGACAAAGACGGAGGTGGCCAGCATTTCAATGGGGTTATTGATTTCAGAACTGAGTGCAAATCCGTGGAAAGGAAAAGTATTCTCATCGGCAGGAAGGATGTTCAAGATGCACAATGTTGAAGGAGACAGTCTCAGACCAAAATGTGAGTTCATGAGGCAGCACATAGAGTGTGTAGAGATGGTGGATATCCACAATATTTACAACCAAGTTCTGCAGATTGCCACAGAAGAAAAGCTAAGCAACATGGAGATGCCCGAGAAGATTTTAGTGCTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

151

Amino Acids

17.14

Weight (kDa)

6.31

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7788	PF25043	47 - 150	9.3e-13	Domain of unknown function (DUF7788)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64260
fragaria_vesca	FvH4_5g36850 FvH4_5g36960
malus_domestica	MD05G1042900.v1.1 MD08G1186400.v1.1 MD10G1050200.v1.1
prunus_persica	Prupe.1G520500_v2.0.a1 Prupe.1G520900_v2.0.a1 Prupe.8G064100_v2.0.a1
pyrus_communis	pycom05g03550 pycom08g16020 pycom10g03530
rosa_chinensis	RchiOBHm_Chr6g0271521 RchiOBHm_Chr7g0243431 RchiOBHm_Chr7g0243701
rosa_laevigata	RLG00000000839 RLG00000000847 RLG00000013724
rosa_multiflora	Rmu_sc0001036.1_g000013 Rmu_sc0008223.1_g000011 Rmu_sc0032000.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222000 Rroxscaffold_3G00222110 Rroxscaffold_7G00196930
rosa_rugosa	Rorug06G0061200 Rorug07G0319200 Rorug07G0320400
rosa_samantha	Rh6AG180400 Rh6CG180200 Rh6DG172100 Rh7AG475300 Rh7AG475900 Rh7BG445200 Rh7BG446600 Rh7BG446800 Rh7BG446900 Rh7CG491500 Rh7CG492900 Rh7DG459800 Rh7DG461000
rosa_wichuraiana	Rw6G015500 Rw6G015570 Rw7G039550 Rw7G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	204, 280, 296
AhlI	ACTAGT	1 cut(s)	103
AluBI	AGCT	2 cut(s)	47, 412
AluI	AGCT	2 cut(s)	47, 412
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	294, 311
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	294, 311
BcuI	ACTAGT	1 cut(s)	103
BfaI	CTAG	2 cut(s)	89, 104
BfmI	CTRYAG	2 cut(s)	81, 389
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	336
BmeT110I	CYCGRG	1 cut(s)	431
BmsI	GCATC	2 cut(s)	273, 417
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu1102I	GCTNAGC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	218, 322
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	294, 311
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	85
Bsp1720I	GCTNAGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	219, 321
BspHI	TCATGA	1 cut(s)	327
BspMAI	CTGCAG	2 cut(s)	85, 393
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	6, 196
BstDEI	CTNAG	4 cut(s)	227, 308, 413, 453
BstDSI	CCRYGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	2 cut(s)	294, 311
BstMBI	GATC	1 cut(s)	85
BstNSI	RCATGY	2 cut(s)	133, 163
BstSFI	CTRYAG	2 cut(s)	81, 389
BstV1I	GCAGC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	239
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	6, 196
CciI	TCATGA	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	5 cut(s)	130, 160, 169, 328, 421
CviJI	RGCY	4 cut(s)	22, 47, 194, 412
CviKI_1	RGCY	4 cut(s)	22, 47, 194, 412
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	4 cut(s)	227, 308, 413, 453
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	364
Eco88I	CYCGRG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	364
FaeI	CATG	5 cut(s)	133, 163, 172, 331, 424
FaiI	YATR	6 cut(s)	131, 161, 170, 329, 341, 422
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	129, 159, 168, 327, 420
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	2 cut(s)	89, 104
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	133, 163, 172, 331, 424
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	223, 311
Hpy188III	TCNNGA	3 cut(s)	89, 280, 328
HpyAV	CCTTC	2 cut(s)	264, 290
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	5 cut(s)	4, 83, 233, 286, 391
HpyF3I	CTNAG	4 cut(s)	227, 308, 413, 453
Hsp92II	CATG	5 cut(s)	133, 163, 172, 331, 424
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	208, 252
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	273, 417
MaeI	CTAG	2 cut(s)	89, 104
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	416, 448
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	3 cut(s)	9, 181, 324
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	203, 425
Msp20I	TGGCCA	1 cut(s)	194
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	5 cut(s)	133, 163, 172, 331, 424
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	133, 163
PagI	TCATGA	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	336
PstI	CTGCAG	2 cut(s)	85, 393
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	203, 425
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	3 cut(s)	49, 192, 414
SfaNI	GCATC	2 cut(s)	273, 417
SfcI	CTRYAG	2 cut(s)	81, 389
SmiMI	CAYNNNNRTG	2 cut(s)	203, 425
SpeI	ACTAGT	1 cut(s)	103
Sse9I	AATT	1 cut(s)	139
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	2 cut(s)	89, 104
TaaI	ACNGT	1 cut(s)	305
TasI	AATT	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	4 cut(s)	71, 90, 185, 316
TspGWI	ACGGA	2 cut(s)	200, 228
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	2 cut(s)	133, 163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	89, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.