Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002144

Physical Location & Seq

Genomic Coordinates Reverse (-)

42708875 .. 42709711

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G520500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

AAGAAAGCTAACATCACTCTGCCAACCTCCACCCATGGTGGTGATTTGCTCCAAGGGGACCTCCCAATTTCAATTCTATGGTATGGAAATTTCTCACCACCTCAAAAATCCATTGTTGTTGATTTTATTCTCTCTCTTAATCATATTGATCCACAAAAAGACCAACAATCCAAGTCCTCAGTCTCTGTGTGGTGGGGCACAGTCCAAACCTACATGAAAAAAGCTGGCAAAAAGCCAACCCGCATTTCTCTATCAACCCAACTCTCAGACAAAAACTACTCAATTGGCAAAAACTTGAAGAAATCTCATGTCTCCGAGTTGGCTCACCGGGTCAACTCGTCACCCGGTGGGTTGACTCTTGTCCTCACATCGCATGACGTGGCGGTTGAGGACTTTTGCATGAGCAATTGTGGGTCCCATGGCCACAAAGCCAACTCGGTCTTCATCTGGTGTGCGTGGCCGTTCCACCAACCCGTGTACGGGCCGCAGACAACACCGTTGGGTGCACCCAACGGGGACGTGGGGGTGGATGGCATGGTCGTAAATATAGCGAGTCTTTTGGCCGGTTCTGTGACGAACCCGTTTGGAAGCGGCTACTATATGGGCTCGGCTGAGGCTCCGCTGGAGGCGGCTTCGGCTTGTCCTGGGGTGTATGGGAAAGGGGCTTATCCCGGTTATGCTGGGGTGTTGCAATTGGACACAAGTTCTGGTGCGAGCTACAATGCGATTGGTCTGAACGGGAGGAAGTACCTCTTGCCTGCTCTGTTTGATCCTAATACTTCTCAGTGTTCAACCATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

268

Amino Acids

28.33

Weight (kDa)

8.24

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64260
fragaria_vesca	FvH4_5g36850 FvH4_5g36960
malus_domestica	MD05G1042900.v1.1 MD08G1186400.v1.1 MD10G1050200.v1.1
prunus_persica	Prupe.1G520500_v2.0.a1 Prupe.1G520900_v2.0.a1 Prupe.8G064100_v2.0.a1
pyrus_communis	pycom05g03550 pycom08g16020 pycom10g03530
rosa_chinensis	RchiOBHm_Chr6g0271521 RchiOBHm_Chr7g0243431 RchiOBHm_Chr7g0243701
rosa_laevigata	RLG00000000839 RLG00000000847 RLG00000013724
rosa_multiflora	Rmu_sc0001036.1_g000013 Rmu_sc0008223.1_g000011 Rmu_sc0032000.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222000 Rroxscaffold_3G00222110 Rroxscaffold_7G00196930
rosa_rugosa	Rorug06G0061200 Rorug07G0319200 Rorug07G0320400
rosa_samantha	Rh6AG180400 Rh6CG180200 Rh6DG172100 Rh7AG475300 Rh7AG475900 Rh7BG445200 Rh7BG446600 Rh7BG446800 Rh7BG446900 Rh7CG491500 Rh7CG492900 Rh7DG459800 Rh7DG461000
rosa_wichuraiana	Rw6G015500 Rw6G015570 Rw7G039550 Rw7G039640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	241, 383, 485, 591, 620, 629
AclWI	GGATC	2 cut(s)	143, 764
AcoI	YGGCCR	3 cut(s)	421, 458, 561
AcsI	RAATTY	1 cut(s)	88
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	479, 749
AfiI	CCNNNNNNNGG	2 cut(s)	479, 480
AgsI	TTSAA	3 cut(s)	72, 298, 792
AjiI	CACGTC	2 cut(s)	379, 520
AjnI	CCWGG	1 cut(s)	643
AjuI	GAANNNNNNNTTGG	4 cut(s)	229, 261, 425, 457
AluBI	AGCT	3 cut(s)	8, 224, 717
AluI	AGCT	3 cut(s)	8, 224, 717
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	187, 316
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	143, 764
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	4 cut(s)	421, 458, 482, 561
ApaLI	GTGCAC	1 cut(s)	504
ApoI	RAATTY	1 cut(s)	88
AspS9I	GGNCC	3 cut(s)	58, 414, 482
AsuC2I	CCSGG	3 cut(s)	329, 345, 672
AsuHPI	GGTGA	4 cut(s)	53, 87, 317, 333
AvaII	GGWCC	2 cut(s)	58, 414
BaeGI	GKGCMC	2 cut(s)	200, 508
BalI	TGGCCA	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	508
BbvCI	CCTCAGC	1 cut(s)	612
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	645
BcnI	CCSGG	3 cut(s)	329, 345, 672
BcoDI	GTCTC	2 cut(s)	187, 316
BisI	GCNGC	3 cut(s)	485, 592, 630
BlsI	GCNGC	3 cut(s)	486, 593, 631
Bme1390I	CCNGG	4 cut(s)	329, 345, 645, 672
Bme18I	GGWCC	2 cut(s)	58, 414
BmgBI	CACGTC	2 cut(s)	379, 520
BmgT120I	GGNCC	3 cut(s)	58, 414, 482
BmiI	GGNNCC	4 cut(s)	59, 415, 416, 618
BmrFI	CCNGG	4 cut(s)	329, 345, 645, 672
BoxI	GACNNNNGTC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	612
BpuMI	CCSGG	3 cut(s)	329, 345, 672
BsaJI	CCNNGG	4 cut(s)	34, 52, 418, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	479, 480
Bse118I	RCCGGY	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	34, 52, 418, 644
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	479, 480
BseMII	CTCAG	4 cut(s)	192, 279, 603, 797
BseSI	GKGCMC	2 cut(s)	200, 508
BseYI	CCCAGC	1 cut(s)	680
BshFI	GGCC	4 cut(s)	423, 460, 484, 563
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	4 cut(s)	328, 345, 564, 672
BslFI	GGGAC	3 cut(s)	71, 400, 530
BslI	CCNNNNNNNGG	2 cut(s)	479, 480
BsmAI	GTCTC	2 cut(s)	187, 316
BsmFI	GGGAC	3 cut(s)	71, 400, 530
BsnI	GGCC	4 cut(s)	423, 460, 484, 563
Bsp1286I	GDGCHC	3 cut(s)	200, 508, 608
Bsp143I	GATC	2 cut(s)	148, 769
Bsp19I	CCATGG	2 cut(s)	34, 418
BspACI	CCGC	6 cut(s)	241, 383, 485, 591, 620, 629
BspANI	GGCC	4 cut(s)	423, 460, 484, 563
BspCNI	CTCAG	4 cut(s)	191, 278, 604, 796
BspLI	GGNNCC	4 cut(s)	59, 415, 416, 618
BspPI	GGATC	2 cut(s)	143, 764
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	4 cut(s)	34, 52, 418, 644
BssMI	GATC	2 cut(s)	148, 769
BssT1I	CCWWGG	3 cut(s)	34, 52, 418
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	202, 498
BstC8I	GCNNGC	3 cut(s)	226, 715, 759
BstDEI	CTNAG	4 cut(s)	178, 265, 612, 783
BstDSI	CCRYGG	2 cut(s)	34, 418
BstF5I	GGATG	1 cut(s)	535
BstKTI	GATC	2 cut(s)	151, 772
BstMAI	GTCTC	2 cut(s)	187, 316
BstMBI	GATC	2 cut(s)	148, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	635
BstNI	CCWGG	1 cut(s)	645
BstPAI	GACNNNNGTC	1 cut(s)	359
BstSCI	CCNGG	4 cut(s)	327, 343, 643, 670
BstSLI	GKGCMC	2 cut(s)	200, 508
BstV2I	GAAGAC	1 cut(s)	433
BsuRI	GGCC	4 cut(s)	423, 460, 484, 563
BtgI	CCRYGG	2 cut(s)	34, 418
BtgZI	GCGATG	1 cut(s)	354
BtrI	CACGTC	2 cut(s)	379, 520
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	791
Cac8I	GCNNGC	3 cut(s)	226, 715, 759
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	3 cut(s)	58, 414, 482
Csp6I	GTAC	2 cut(s)	478, 748
CviAII	CATG	7 cut(s)	35, 214, 308, 374, 400, 419, 535
CviQI	GTAC	2 cut(s)	478, 748
DdeI	CTNAG	4 cut(s)	178, 265, 612, 783
DpnI	GATC	2 cut(s)	150, 771
DpnII	GATC	2 cut(s)	148, 769
DraIII	CACNNNGTG	1 cut(s)	347
EaeI	YGGCCR	3 cut(s)	421, 458, 561
Eco130I	CCWWGG	3 cut(s)	34, 52, 418
Eco24I	GRGCYC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	58, 414
EcoO109I	RGGNCCY	2 cut(s)	58, 414
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	3 cut(s)	34, 52, 418
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	3 cut(s)	34, 52, 418
FaeI	CATG	7 cut(s)	38, 217, 311, 377, 403, 422, 538
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	3 cut(s)	71, 400, 530
FatI	CATG	7 cut(s)	34, 213, 307, 373, 399, 418, 534
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	485, 592, 630
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	485, 592, 630
GluI	GCNGC	3 cut(s)	485, 592, 630
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	644
HaeIII	GGCC	4 cut(s)	423, 460, 484, 563
HapII	CCGG	4 cut(s)	328, 345, 564, 672
Hin1II	CATG	7 cut(s)	38, 217, 311, 377, 403, 422, 538
HincII	GTYRAC	2 cut(s)	334, 354
HindII	GTYRAC	2 cut(s)	334, 354
HinfI	GANTC	2 cut(s)	355, 553
HpaII	CCGG	4 cut(s)	328, 345, 564, 672
HphI	GGTGA	4 cut(s)	53, 87, 317, 333
Hpy166II	GTNNAC	4 cut(s)	334, 354, 478, 506
Hpy188I	TCNGA	3 cut(s)	268, 316, 735
Hpy8I	GTNNAC	4 cut(s)	334, 354, 478, 506
HpyCH4III	ACNGT	2 cut(s)	202, 498
HpyCH4IV	ACGT	2 cut(s)	378, 519
HpyCH4V	TGCA	3 cut(s)	399, 506, 691
HpyF10VI	GCNNNNNNNGC	1 cut(s)	635
HpyF3I	CTNAG	4 cut(s)	178, 265, 612, 783
HpySE526I	ACGT	2 cut(s)	378, 519
Hsp92II	CATG	7 cut(s)	38, 217, 311, 377, 403, 422, 538
KflI	GGGWCCC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	148, 769
LmnI	GCTCC	2 cut(s)	54, 622
MaeII	ACGT	2 cut(s)	378, 519
MaeIII	GTNAC	2 cut(s)	339, 571
MalI	GATC	2 cut(s)	150, 771
MboI	GATC	2 cut(s)	148, 769
MboII	GAAGA	2 cut(s)	310, 433
MfeI	CAATTG	3 cut(s)	282, 406, 692
MhlI	GDGCHC	3 cut(s)	200, 508, 608
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	6 cut(s)	66, 72, 88, 282, 406, 692
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	349, 562
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	622
MspI	CCGG	4 cut(s)	328, 345, 564, 672
MspR9I	CCNGG	4 cut(s)	329, 345, 645, 672
MunI	CAATTG	3 cut(s)	282, 406, 692
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	1 cut(s)	635
NciI	CCSGG	3 cut(s)	329, 345, 672
NcoI	CCATGG	2 cut(s)	34, 418
NdeII	GATC	2 cut(s)	148, 769
NlaIII	CATG	7 cut(s)	38, 217, 311, 377, 403, 422, 538
NlaIV	GGNNCC	4 cut(s)	59, 415, 416, 618
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	2 cut(s)	339, 571
PkrI	GCNGC	3 cut(s)	486, 593, 631
PleI	GAGTC	2 cut(s)	349, 561
PpsI	GAGTC	2 cut(s)	349, 561
PpuMI	RGGWCCY	2 cut(s)	58, 414
PshAI	GACNNNNGTC	1 cut(s)	359
Psp5II	RGGWCCY	2 cut(s)	58, 414
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	4 cut(s)	59, 415, 416, 618
PspPI	GGNCC	3 cut(s)	58, 414, 482
PspPPI	RGGWCCY	2 cut(s)	58, 414
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	479, 749
RsaNI	GTAC	2 cut(s)	478, 748
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	3 cut(s)	485, 592, 630
Sau3AI	GATC	2 cut(s)	148, 769
Sau96I	GGNCC	3 cut(s)	58, 414, 482
SchI	GAGTC	2 cut(s)	349, 562
ScrFI	CCNGG	4 cut(s)	329, 345, 645, 672
SduI	GDGCHC	3 cut(s)	200, 508, 608
SinI	GGWCC	2 cut(s)	58, 414
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	6 cut(s)	66, 72, 88, 282, 406, 692
SsiI	CCGC	6 cut(s)	241, 383, 485, 591, 620, 629
StyD4I	CCNGG	4 cut(s)	327, 343, 643, 670
StyI	CCWWGG	3 cut(s)	34, 52, 418
TaaI	ACNGT	2 cut(s)	202, 498
TaiI	ACGT	2 cut(s)	381, 522
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	6 cut(s)	66, 72, 88, 282, 406, 692
TauI	GCSGC	3 cut(s)	487, 594, 632
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	791
TseFI	GTSAC	2 cut(s)	339, 571
Tsp45I	GTSAC	2 cut(s)	339, 571
TspDTI	ATGAA	2 cut(s)	230, 433
TspRI	CASTG	1 cut(s)	791
VneI	GTGCAC	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	58, 414
XapI	RAATTY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.