Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

1170106 .. 1173010

Gene Structure 2905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02023.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGCAAGCTTTGATATGCACACAAAGTTGGCTTAGAGGTGAAACTATTGCTTTGAATCATGTGCCATCAAGTGAAGAGATTGAGCTATGTGAAGAGGCGGAAAAAGAAATATTGGAGATGCCATCATTGTCAAGTAAGCAAAATGTGAAGTGTGGTATGTTGCCTCCTAAGATGAAGGAGAAGCCGTTTGCTAGCATTGGTTTTTCGAAGAATGGGAAGAGTTTGGGGACGGCGGCGAGGTTTGATGCTGGTGGTTTGGGTATTGGGGTGGCAGATTGCGAAGGGAAGAGGTTGGATTGGGAATGTGGGGTGTATCCTCATGTTCTGTTGAAGAATGTGGGGGTGGAGATGATGTTTAGTGTTGAAGATGGACTGGTGCCCAAAGAGGGGTTTAAGGCTTGGGAATGTGCTGTTGATTATGGGAATTCGGTTATGGGACCGGCTGTTTGTGAACAGGAGGATTGTGAAGTGATGATGATGGTGGGTTTGTCTGCCTCGGGGAAAGCTACTTGGGCACAAAGATGGGTGAAAGAGAACCCGGAGAAGTGTTATGTTGTGATAATAGAAAATAAGAATTCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

196

Amino Acids

21.36

Weight (kDa)

4.93

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	158 - 188	4e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AciI	CCGC	2 cut(s)	101, 236
AcsI	RAATTY	2 cut(s)	427, 577
AfiI	CCNNNNNNNGG	2 cut(s)	389, 390
AgsI	TTSAA	3 cut(s)	58, 334, 368
AluBI	AGCT	3 cut(s)	11, 88, 509
AluI	AGCT	3 cut(s)	11, 88, 509
Ama87I	CYCGRG	1 cut(s)	499
ApoI	RAATTY	2 cut(s)	427, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	432, 464
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	53, 541
AsuII	TTCGAA	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	384, 520
BanI	GGYRCC	1 cut(s)	379
BccI	CCATC	5 cut(s)	76, 133, 365, 475, 519
BceAI	ACGGC	2 cut(s)	172, 249
BciVI	GTATCC	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	542
BfaI	CTAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	381, 441
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	111, 238
BmtI	GCTAGC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 390
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	2 cut(s)	389, 390
BseNI	ACTGG	1 cut(s)	381
BseSI	GKGCMC	2 cut(s)	384, 520
BshNI	GGYRCC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	443, 542
BslFI	GGGAC	2 cut(s)	244, 453
BslI	CCNNNNNNNGG	2 cut(s)	389, 390
BsmFI	GGGAC	2 cut(s)	244, 453
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	384, 520
BspACI	CCGC	2 cut(s)	101, 236
BspLI	GGNNCC	2 cut(s)	381, 441
BspOI	GCTAGC	1 cut(s)	198
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	381
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	498
Bst6I	CTCTTC	4 cut(s)	72, 90, 215, 284
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	9, 196
BstDEI	CTNAG	2 cut(s)	35, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	540
BstSLI	GKGCMC	2 cut(s)	384, 520
BsuI	GTATCC	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	9, 196
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	440
CviAII	CATG	2 cut(s)	62, 323
CviJI	RGCY	7 cut(s)	11, 34, 88, 187, 401, 446, 509
CviKI_1	RGCY	7 cut(s)	11, 34, 88, 187, 401, 446, 509
DdeI	CTNAG	2 cut(s)	35, 171
Eam1104I	CTCTTC	4 cut(s)	72, 90, 215, 284
EarI	CTCTTC	4 cut(s)	72, 90, 215, 284
EciI	GGCGGA	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	440
Eco88I	CYCGRG	1 cut(s)	499
EcoRI	GAATTC	2 cut(s)	427, 577
FaeI	CATG	2 cut(s)	65, 326
FaiI	YATR	9 cut(s)	19, 63, 91, 161, 324, 423, 437, 555, 586
FaqI	GGGAC	2 cut(s)	244, 453
FatI	CATG	2 cut(s)	61, 322
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	237
HapII	CCGG	2 cut(s)	443, 542
Hin1II	CATG	2 cut(s)	65, 326
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	2 cut(s)	443, 542
HphI	GGTGA	2 cut(s)	53, 541
Hpy166II	GTNNAC	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	455
HpyAV	CCTTC	2 cut(s)	172, 278
HpyCH4V	TGCA	2 cut(s)	7, 21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	2 cut(s)	35, 171
Hsp92II	CATG	2 cut(s)	65, 326
LpnPI	CCDG	5 cut(s)	237, 362, 443, 456, 555
LweI	GCATC	2 cut(s)	111, 238
MaeI	CTAG	1 cut(s)	195
MboII	GAAGA	7 cut(s)	89, 107, 223, 232, 301, 346, 380
MhlI	GDGCHC	2 cut(s)	384, 520
MluCI	AATT	2 cut(s)	427, 577
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	9 cut(s)	32, 91, 177, 234, 285, 330, 382, 454, 508
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	1 cut(s)	523
MspI	CCGG	2 cut(s)	443, 542
MspR9I	CCNGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	542
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	2 cut(s)	65, 326
NlaIV	GGNNCC	2 cut(s)	381, 441
NspV	TTCGAA	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	381, 441
PspPI	GGNCC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	384, 520
SetI	ASST	6 cut(s)	13, 43, 90, 245, 296, 511
SfaNI	GCATC	2 cut(s)	111, 238
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	523
Sse9I	AATT	2 cut(s)	427, 577
SsiI	CCGC	2 cut(s)	101, 236
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	540
TaqI	TCGA	2 cut(s)	209, 581
TasI	AATT	2 cut(s)	427, 577
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TspDTI	ATGAA	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	2 cut(s)	427, 577
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.