Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

69063033 .. 69063784

Gene Structure 752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG490400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATTAAAGCAAGTTATATCATAGATAGTCTTTTATCCATAGCAACTACCAAAGCAGCCACCAGTCCTCGCAATTACATTCTTGATGGGACATATGTAGACAAGGATGACCGTGAGTTTGAACTTAGGCAGTTCAATCTTTTCATGAAGATTGCTGTTGTGGTGTTTCCAAGCCCTGAAGATGTGAAGACTCGTTTGTTGAAAAGATTTGAAGATTTTGGATCTTTGGGACCCGCTGATATACTGAATGAAATGTTGGCCAATTTTCTTTTACCTGTCACCAAGGATGTACCTTGTTCAGATGAACTTTTTGATGAGGTTATGTTCGTTGAACTCAACAGAGAAGAATCACATAAACTTTTGGAGGGGATGAAGCAGGAAGAATATGATGTGAACTCGAATTACTCTTCACCATACTCTTGCAGAAACTTTGATGAGTCGTATCCTTTTTCACCAAAATATAGGGAGAGTATCTTGCCACATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

162

Amino Acids

18.74

Weight (kDa)

4.68

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	291
AgsI	TTSAA	5 cut(s)	122, 136, 202, 212, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AlwI	GGATC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	3 cut(s)	271, 402, 444
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	453
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	231, 232
BpiI	GAAGAC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	4 cut(s)	112, 292, 375, 481
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	260
BslFI	GGGAC	2 cut(s)	103, 243
BsmFI	GGGAC	2 cut(s)	103, 243
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	231, 232
BspPI	GGATC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	125
BstF5I	GGATG	4 cut(s)	112, 292, 375, 481
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	112, 292, 375, 481
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	3 cut(s)	59, 174, 260
CviKI_1	RGCY	3 cut(s)	59, 174, 260
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	148
FaqI	GGGAC	2 cut(s)	103, 243
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	4 cut(s)	119, 299, 382, 468
Fsp4HI	GCNGC	1 cut(s)	57
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	148
HinfI	GANTC	3 cut(s)	190, 347, 437
HphI	GGTGA	3 cut(s)	271, 402, 444
Hpy166II	GTNNAC	2 cut(s)	100, 394
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	83, 145
Hpy8I	GTNNAC	2 cut(s)	100, 394
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	423
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	148
KflI	GGGWCCC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	4 cut(s)	76, 189, 288, 362
Lsp1109I	GCAGC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	7 cut(s)	160, 191, 199, 224, 356, 392, 399
MflI	RGATCY	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	3 cut(s)	73, 262, 400
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	184, 446
MnlI	CCTC	3 cut(s)	78, 310, 358
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	6
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	231, 232
NmuCI	GTSAC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	2 cut(s)	184, 445
PpsI	GAGTC	2 cut(s)	184, 445
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	231, 232
PspPI	GGNCC	1 cut(s)	230
PspPPI	RGGWCCY	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	184, 446
SetI	ASST	3 cut(s)	277, 295, 321
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	73, 262, 400
SsiI	CCGC	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	398
TasI	AATT	3 cut(s)	73, 262, 400
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	5 cut(s)	133, 161, 264, 318, 386
VpaK11BI	GGWCC	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.