Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

27167951 .. 27168344

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCTTCCGCAACTTATTCTGGTTACTCGGGCAGTTACAGTGCTGTTCCTAGGGGAGGTACAGATCATTGCCAGAGTTATGGACGACCCGGTGCTCCCACTAACCCCTACGGTAGTACTGTGAGTGGAGCTTATCCGGTAGGTAGTGCGGTGACTTCATTCATAGGCAATGCTCACAGACATCTTGGCAGTGCTGGAGATCCCAGAGGTGCTGCTTCCCGAGCTCCAATAGCACCCACATTTCTTCCCAATCCGTCCCCACCTGCACATGGAGGCTTACCATATCGAACTCCAGCTCCTGGTCCTCAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

105

Amino Acids

10.46

Weight (kDa)

9.58

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	299
AciI	CCGC	2 cut(s)	9, 149
AclWI	GGATC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	61, 118
AfiI	CCNNNNNNNGG	3 cut(s)	56, 269, 299
AjnI	CCWGG	1 cut(s)	298
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
AluBI	AGCT	3 cut(s)	131, 224, 296
AluI	AGCT	3 cut(s)	131, 224, 296
Alw21I	GWGCWC	2 cut(s)	97, 226
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	299
Ama87I	CYCGRG	2 cut(s)	28, 219
ApeKI	GCWGC	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	2 cut(s)	28, 219
AvaII	GGWCC	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	97, 226
BbvI	GCAGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	90
BfaI	CTAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	214
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	90, 300
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	2 cut(s)	28, 219
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	90, 300
BpmI	CTGGAG	2 cut(s)	216, 276
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 269, 299
Bse3DI	GCAATG	2 cut(s)	67, 175
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	56, 269, 299
BseMI	GCAATG	2 cut(s)	67, 175
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	97, 226
BsiHKCI	CYCGRG	2 cut(s)	28, 219
BsiSI	CCGG	2 cut(s)	90, 137
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	56, 269, 299
BsmFI	GGGAC	1 cut(s)	241
BsoBI	CYCGRG	2 cut(s)	28, 219
Bsp1286I	GDGCHC	2 cut(s)	97, 226
Bsp143I	GATC	2 cut(s)	64, 199
BspACI	CCGC	2 cut(s)	9, 149
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	67, 175
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	64, 199
BssT1I	CCWWGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	41, 113, 121
BstDEI	CTNAG	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	67, 202
BstMBI	GATC	2 cut(s)	64, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 230
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	88, 298
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	46, 196
BveI	ACCTGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	60, 117
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	4 cut(s)	131, 224, 276, 296
CviKI_1	RGCY	4 cut(s)	131, 224, 276, 296
CviQI	GTAC	2 cut(s)	60, 117
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	66, 201
DpnII	GATC	2 cut(s)	64, 199
Ecl136II	GAGCTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	224
Eco88I	CYCGRG	2 cut(s)	28, 219
EcoICRI	GAGCTC	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	1 cut(s)	272
FaiI	YATR	4 cut(s)	81, 164, 270, 283
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	216, 276
HapII	CCGG	2 cut(s)	90, 137
Hin1II	CATG	1 cut(s)	272
HpaII	CCGG	2 cut(s)	90, 137
HphI	GGTGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	3 cut(s)	41, 113, 121
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 230
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	64, 199
LmnI	GCTCC	4 cut(s)	100, 128, 229, 301
LpnPI	CCDG	9 cut(s)	6, 86, 103, 150, 180, 217, 276, 285, 306
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	23, 35, 151
MalI	GATC	2 cut(s)	66, 201
MboI	GATC	2 cut(s)	64, 199
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	97, 226
MnlI	CCTC	4 cut(s)	50, 200, 266, 315
MspI	CCGG	2 cut(s)	90, 137
MspR9I	CCNGG	2 cut(s)	90, 300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	221, 230
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	64, 199
NlaIII	CATG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	151
PaqCI	CACCTGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	2 cut(s)	61, 118
RsaNI	GTAC	2 cut(s)	60, 117
SacI	GAGCTC	1 cut(s)	226
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	64, 199
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	90, 300
SduI	GDGCHC	2 cut(s)	97, 226
SetI	ASST	7 cut(s)	61, 133, 145, 211, 226, 265, 298
SinI	GGWCC	1 cut(s)	302
SsiI	CCGC	2 cut(s)	9, 149
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	88, 298
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	3 cut(s)	41, 113, 121
TaqI	TCGA	1 cut(s)	286
TatI	WGTACW	1 cut(s)	116
TscAI	CASTG	2 cut(s)	46, 196
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	147, 151
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	46, 196
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	54
XmaJI	CCTAGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	51
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.