Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

3828051 .. 3828477

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCATCAACCAAACGCGAAGCTCCCACTGAAGACGAACCAGAGCCCTCGAAGAAGCCCAAGCTCCAGAAGCGCGTGGTTCTCAATCGCGTCGATTGCGACCTAGATTTCAACATTGAAGGCAATGGGCTTCGAGGTTCTTCGCTCTACGAGCAAGGATTTGCGTATTGCTGGTCCGGTGCTAGAGCCAATGTGGGAATTACTGGCGGGAAATACTGTTTCGGCTGCAAAGTGACGTCGTTTCAGCCTGTTGAGATGGAGGACACGGCACCGGAGCAGCGGAATCTTTGCCGGGTTGGGATTTCCAGAAGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

105

Amino Acids

11.65

Weight (kDa)

8.31

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	3 cut(s)	18, 75, 90
AciI	CCGC	2 cut(s)	207, 280
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	112, 119
AluBI	AGCT	2 cut(s)	23, 64
AluI	AGCT	2 cut(s)	23, 64
ApeKI	GCWGC	2 cut(s)	225, 277
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	212, 289
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	293
BfaI	CTAG	2 cut(s)	104, 183
BisI	GCNGC	2 cut(s)	226, 278
BlsI	GCNGC	2 cut(s)	227, 279
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	236
BsaWI	WCCGGW	2 cut(s)	176, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	212, 289
Bsh1236I	CGCG	3 cut(s)	18, 75, 90
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	177, 272, 292
BslI	CCNNNNNNNGG	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	207, 280
BspFNI	CGCG	3 cut(s)	18, 75, 90
BspLI	GGNNCC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	236
BstFNI	CGCG	3 cut(s)	18, 75, 90
BstHHI	GCGC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 96, 151
BstSCI	CCNGG	1 cut(s)	291
BstUI	CGCG	3 cut(s)	18, 75, 90
BstV1I	GCAGC	2 cut(s)	212, 289
BstV2I	GAAGAC	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	79
CviJI	RGCY	8 cut(s)	23, 46, 58, 64, 130, 188, 225, 247
CviKI_1	RGCY	8 cut(s)	23, 46, 58, 64, 130, 188, 225, 247
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	48
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	226, 278
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	2 cut(s)	226, 278
FspBI	CTAG	2 cut(s)	104, 183
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	226, 278
GsuI	CTGGAG	1 cut(s)	50
HapII	CCGG	3 cut(s)	177, 272, 292
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	236
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	177, 272, 292
Hpy188III	TCNNGA	2 cut(s)	67, 306
Hpy99I	CGWCG	2 cut(s)	95, 241
HpyAV	CCTTC	2 cut(s)	113, 303
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 96, 151
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	236
HspAI	GCGC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	28, 69, 274
LpnPI	CCDG	8 cut(s)	54, 80, 157, 189, 190, 261, 285, 305
Lsp1109I	GCAGC	2 cut(s)	212, 289
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	104, 183
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	44, 64, 132
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	198
MnlI	CCTC	3 cut(s)	58, 128, 253
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	3 cut(s)	177, 272, 292
MspR9I	CCNGG	1 cut(s)	293
MvnI	CGCG	3 cut(s)	18, 75, 90
MwoI	GCNNNNNNNGC	3 cut(s)	70, 96, 151
NciI	CCSGG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	227, 279
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	174
SatI	GCNGC	2 cut(s)	226, 278
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	25, 66, 105, 139, 239
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	207, 280
SspMI	CTAG	2 cut(s)	104, 183
StyD4I	CCNGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	50, 93, 133
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	283
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	2 cut(s)	225, 277
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	174
XspI	CTAG	2 cut(s)	104, 183
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.