Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005327.1

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

94471 .. 96618

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005327.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgaaatggaaaggaagagatatttgtttcaacattgaaggcaatgggcttttgggcccttccctatacgagaagggattagcttattgctggttcggtgctcgagccaatgtgggtatatccagtgggaagtactgtttcggttgcaaagtggtgtcgttccaatctgttcaaatggaggacactgaccctgaagactggaatctttgtcgggttagtatttctagaggggatgatgtggtgggaagccttggggaaacaagccacagctttgcatatgagggcactggaaaattttggaatgttatgaggtctccgtgctatggtgagaagtttgggcttggagatactattgtttgtgcagtcagtcttgaagaaaagcccttggcttccatttctttttccaagaatggaaagtgtttgggtacggcgatgaagttcaatgcagccatggatcctgaagtgaagaattttcaatgggaatttgcctttttccctcaccttctgttgaaaaatgtggaagtggagttgcagttcagtgttgaagatgaacttgttcttgaagatggatttaagccttgggcggctgctcttggggatggaaatgcgattgggggaccggtttttgatgatccaaaggattgtgaagtgatgatgatggtgggtatgcctgcctcaggcaaaacaactggggcaaagaaatgggtgaaagaccacccagagaaacgatatgttttcgttgtcaacacctgtgttgccactaacccctgtcctagtcctggatgttatggtaatgctggatacttgagttgtgctgccctagagacttcaagagcacctgcagttctccttagtcctccttgtcacctacccgggtacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

294

Amino Acids

31.99

Weight (kDa)

5.23

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc36I	ACCTGC	1 cut(s)	847
Acc65I	GGTACC	1 cut(s)	876
AccB1I	GGYRCC	1 cut(s)	876
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	3 cut(s)	449, 462, 626
AcsI	RAATTY	3 cut(s)	293, 469, 482
AcuI	CTGAAG	2 cut(s)	213, 480
AfaI	GTAC	3 cut(s)	134, 427, 878
AfiI	CCNNNNNNNGG	3 cut(s)	323, 677, 779
AgeI	ACCGGT	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	778
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	2 cut(s)	83, 270
AluI	AGCT	2 cut(s)	83, 270
Alw21I	GWGCWC	2 cut(s)	103, 838
Alw26I	GTCTC	2 cut(s)	318, 818
AlwI	GGATC	3 cut(s)	449, 462, 626
Ama87I	CYCGRG	2 cut(s)	102, 872
AoxI	GGCC	1 cut(s)	55
ApaI	GGGCCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	446, 587, 815
ApoI	RAATTY	3 cut(s)	293, 469, 482
AsiGI	ACCGGT	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	555
Asp718I	GGTACC	1 cut(s)	876
AspS9I	GGNCC	3 cut(s)	55, 56, 617
AsuC2I	CCSGG	2 cut(s)	873, 874
AsuHPI	GGTGA	4 cut(s)	338, 491, 718, 857
AvaI	CYCGRG	2 cut(s)	102, 872
AvaII	GGWCC	1 cut(s)	617
AxyI	CCTNAGG	1 cut(s)	676
BaeGI	GKGCMC	2 cut(s)	59, 287
BaeI	ACNNNNGTAYC	5 cut(s)	339, 372, 793, 826, 860
BamHI	GGATCC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	876
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	2 cut(s)	103, 838
BbvI	GCAGC	3 cut(s)	458, 574, 802
BccI	CCATC	3 cut(s)	560, 593, 652
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	1 cut(s)	794
BcnI	CCSGG	2 cut(s)	873, 874
BcoDI	GTCTC	2 cut(s)	318, 818
BfaI	CTAG	3 cut(s)	225, 774, 821
BfmI	CTRYAG	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	847
BfuI	GTATCC	1 cut(s)	794
BisI	GCNGC	4 cut(s)	447, 585, 588, 816
BlsI	GCNGC	4 cut(s)	448, 586, 589, 817
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	3 cut(s)	780, 873, 874
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	2 cut(s)	102, 872
BmgT120I	GGNCC	3 cut(s)	55, 56, 617
BmiI	GGNNCC	4 cut(s)	57, 456, 618, 878
BmrFI	CCNGG	3 cut(s)	780, 873, 874
BmrI	ACTGGG	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	826
BpuMI	CCSGG	2 cut(s)	873, 874
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	250, 384, 450, 578, 872
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 677, 779
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	4 cut(s)	123, 203, 292, 694
Bse21I	CCTNAGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	5 cut(s)	250, 384, 450, 578, 872
BseGI	GGATG	3 cut(s)	238, 604, 788
BseLI	CCNNNNNNNGG	3 cut(s)	323, 677, 779
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	690
BseNI	ACTGG	4 cut(s)	123, 203, 292, 694
BseSI	GKGCMC	2 cut(s)	59, 287
BseXI	GCAGC	3 cut(s)	458, 574, 802
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	876
BshTI	ACCGGT	1 cut(s)	619
BsiHKAI	GWGCWC	2 cut(s)	103, 838
BsiHKCI	CYCGRG	2 cut(s)	102, 872
BsiSI	CCGG	2 cut(s)	620, 873
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	3 cut(s)	323, 677, 779
BsmAI	GTCTC	2 cut(s)	318, 818
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	1 cut(s)	57
Bso31I	GGTCTC	1 cut(s)	318
BsoBI	CYCGRG	2 cut(s)	102, 872
Bsp120I	GGGCCC	1 cut(s)	55
Bsp1286I	GDGCHC	4 cut(s)	59, 103, 287, 838
Bsp143I	GATC	2 cut(s)	454, 631
Bsp19I	CCATGG	1 cut(s)	450
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	689
BspLI	GGNNCC	4 cut(s)	57, 456, 618, 878
BspMAI	CTGCAG	1 cut(s)	844
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	3 cut(s)	449, 462, 626
BspT107I	GGYRCC	1 cut(s)	876
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	4 cut(s)	123, 203, 292, 694
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	5 cut(s)	250, 384, 450, 578, 872
BssMI	GATC	2 cut(s)	454, 631
BssT1I	CCWWGG	4 cut(s)	250, 384, 450, 578
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	2 cut(s)	676, 851
BstDSI	CCRYGG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	3 cut(s)	238, 604, 788
BstKTI	GATC	2 cut(s)	457, 634
BstMAI	GTCTC	2 cut(s)	318, 818
BstMBI	GATC	2 cut(s)	454, 631
BstNI	CCWGG	1 cut(s)	780
BstSCI	CCNGG	3 cut(s)	778, 871, 872
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	2 cut(s)	59, 287
BstV1I	GCAGC	3 cut(s)	458, 574, 802
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
Bsu36I	CCTNAGG	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	794
BsuRI	GGCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	450
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	238, 604, 788
BtsIMutI	CAGTG	4 cut(s)	130, 183, 285, 544
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	1 cut(s)	672
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	55, 56, 617
Cfr9I	CCCGGG	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	133, 426, 877
CspAI	ACCGGT	1 cut(s)	619
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	3 cut(s)	133, 426, 877
DdeI	CTNAG	2 cut(s)	676, 851
DpnI	GATC	2 cut(s)	456, 633
DpnII	GATC	2 cut(s)	454, 631
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	4 cut(s)	250, 384, 450, 578
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	213, 480
Eco81I	CCTNAGG	1 cut(s)	676
Eco88I	CYCGRG	2 cut(s)	102, 872
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	4 cut(s)	250, 384, 450, 578
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	4 cut(s)	250, 384, 450, 578
FaeI	CATG	1 cut(s)	454
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	1 cut(s)	450
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	447, 585, 588, 816
FokI	GGATG	3 cut(s)	245, 611, 795
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	447, 585, 588, 816
FspBI	CTAG	3 cut(s)	225, 774, 821
GluI	GCNGC	4 cut(s)	447, 585, 588, 816
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	2 cut(s)	620, 873
Hin1II	CATG	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	620, 873
HphI	GGTGA	4 cut(s)	338, 491, 718, 857
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	1 cut(s)	884
Hpy188III	TCNNGA	5 cut(s)	225, 371, 458, 560, 831
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	32, 67, 69, 512
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	6 cut(s)	147, 275, 362, 446, 532, 842
HpyF3I	CTNAG	2 cut(s)	676, 851
Hsp92II	CATG	1 cut(s)	454
KpnI	GGTACC	1 cut(s)	880
Kzo9I	GATC	2 cut(s)	454, 631
Lsp1109I	GCAGC	3 cut(s)	458, 574, 802
MaeI	CTAG	3 cut(s)	225, 774, 821
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	2 cut(s)	456, 633
MboI	GATC	2 cut(s)	454, 631
MboII	GAAGA	6 cut(s)	27, 206, 386, 478, 557, 575
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	4 cut(s)	59, 103, 287, 838
MluCI	AATT	3 cut(s)	293, 469, 482
MnlI	CCTC	7 cut(s)	172, 221, 274, 303, 507, 685, 867
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	1 cut(s)	573
MspI	CCGG	2 cut(s)	620, 873
MspR9I	CCNGG	3 cut(s)	780, 873, 874
MvaI	CCWGG	1 cut(s)	780
NciI	CCSGG	2 cut(s)	873, 874
NcoI	CCATGG	1 cut(s)	450
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	454, 631
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	4 cut(s)	57, 456, 618, 878
NmuCI	GTSAC	1 cut(s)	863
PaeR7I	CTCGAG	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	778
PinAI	ACCGGT	1 cut(s)	619
PkrI	GCNGC	4 cut(s)	448, 586, 589, 817
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	4 cut(s)	57, 456, 618, 878
PspOMI	GGGCCC	1 cut(s)	55
PspPI	GGNCC	3 cut(s)	55, 56, 617
PspXI	VCTCGAGB	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	844
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	3 cut(s)	134, 427, 878
RsaNI	GTAC	3 cut(s)	133, 426, 877
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	4 cut(s)	447, 585, 588, 816
Sau3AI	GATC	2 cut(s)	454, 631
Sau96I	GGNCC	3 cut(s)	55, 56, 617
ScaI	AGTACT	1 cut(s)	134
ScrFI	CCNGG	3 cut(s)	780, 873, 874
SduI	GDGCHC	4 cut(s)	59, 103, 287, 838
SetI	ASST	8 cut(s)	85, 272, 314, 504, 752, 841, 870, 882
SfcI	CTRYAG	1 cut(s)	840
Sfr274I	CTCGAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	874
SmlI	CTYRAG	2 cut(s)	102, 805
SmoI	CTYRAG	2 cut(s)	102, 805
Sse9I	AATT	3 cut(s)	293, 469, 482
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	3 cut(s)	225, 774, 821
StyD4I	CCNGG	3 cut(s)	778, 871, 872
StyI	CCWWGG	4 cut(s)	250, 384, 450, 578
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	293, 469, 482
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	4 cut(s)	130, 190, 292, 544
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	3 cut(s)	446, 587, 815
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	3 cut(s)	17, 449, 564
TspGWI	ACGGA	1 cut(s)	306
TspMI	CCCGGG	1 cut(s)	872
TspRI	CASTG	4 cut(s)	130, 190, 292, 544
VpaK11BI	GGWCC	1 cut(s)	617
XagI	CCTNNNNNAGG	1 cut(s)	675
XapI	RAATTY	3 cut(s)	293, 469, 482
XbaI	TCTAGA	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	102
XmaI	CCCGGG	1 cut(s)	872
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	3 cut(s)	225, 774, 821
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.