Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

3922041 .. 3924782

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG047200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGGCATCAACCAAACGCGAAGCTCCCACTGAAGACGAACTAGAGCCCTCGAAGAAGCCCAAGCTCAATCAGCGCGTGATTCTCAATCGCGTCGATTGCGACCTAGATTTCAACATTGAAGGCAATGGGCTTCGAGGTTCTTCGCTCTACGAGCAAGGATTTGCGTATTGCTGGTCCGGTGCTAGAGCCAATGTGGGAATTACTGGCGGGAAATACTGTTTCGGCTGCAAAGTGACGTCGTTTCAGCCTGTTGAGATGGAGGACACGGCGCCGGAGCAGCGGAATCTTTGCCGGGTTGGGATTTCCAGAGGGGGTGATGTGGTGGGAGGCCTTGGGGAAACAAAGCTGAGCTTTGGGTATGGTGGGACAGGGAAGTTTTCGAATGCCAGTAGGTTTTCGGACTACGGTGAGAAGTTTGGGCTTGGGGATGTGATTGTTTGTGCTGTGAATCTTGAAGAGAAGCCACTGGCTTGCATTGGTTTTTCGAAGAATGGGAAGAGTTTGAGTACGGCGGTGAGGTTCAATGCTGGGGATTTGGGTCTTGGGGTGGCGGAGGGTGAAGTGAAGAATTTGCATTGGGAATGTGGGGTGTTCCCTCATGTGCTGTTGAAAAATGTGGGGGTGGAGTTGATGTTTGGTGTTGAAGATGGACTTGTCCCTGAAGAGGGTTTTAGGCCTTGGGAATGTGCTCTTGAGGATGGGAATTCTGTTATGGGACCGTTTGTCTCTGAACCGAAGCATTGTGAAGTGATGATGATGGTGGGTTTGCCTGCCTCAGGCAAAACAACTTGGGCAGAGAAATGGGTGAAAGAGCACCCTGAGAAGCGTTATGTTGTGCTTGGGACAAATGTGGTTCTAGACCAAATGAAGGTGCCAGGGCTCTTGAGGAAGCAGAATTATGGTGAGCGATTTGAACGTCTGATGAGTAGAGCCACTGAAATTTTTAATACTCTTTTATCCAGAGCAGCCACCACTCCTCGCAATTACATTCTTGATCAGACAAATGTATACAAGAATGCTCGTAAACGTAAACTTTCGCCATTCAAACTGTTCAAGAAGATTGCTGTTGTGGTGTTTCCAAGCCCTGAAGAGATGAAGGCTCGTTCTATGAAGAGATTCAGAGAAATGGGAAAGGAGGTACCTGCTGATGCAGTGAATGAAATGTTGGCCAATTATGTTTTACCTGTCAGCAGGGATGTGCCTTGTTCAGATGAGCTTTTTGATGAGGTTATGTTTGTAGAACTCAACAGAGAAGAATCACAGAGACATGTGGATGAGATGAAGCACGAACTTGCACATAAATCTAATTTGAAAACGAATACATCTTCATCATATTCCTGCGGAAACTCAATTCAGTCTTATCCTTGTTCACCAAGTTATGGGGTGAGTCCTGTGCGGCCATATCCCTCTCCTTCACCACAATATCAAGGAGTTTCAGCAGTCAACACTGGAAATTGGAATAGCTCTTACTCATCTGTTCCTCCACCTTACTATCAGTCGCATATGCCCAACCAAGTGAATTCATATCGGACCCATCAGGGAGCTGTGCCAGTTGGGACTGCAGGACCATATCAAGGCAATCAACCTCCACCTATACCTAGAGCAATTACCCATCAAGGAACTTGTTCTGGCTACTCCAGCAGTTATAATGCCAATCCTACAAGTGGTACAGCCCCTGGCAATAGTTACGGAGCAGGTTATGGTGCTGCCACTAACCCCTATCCTAGTCCGGCAGTTCAACCCTCTCTAGTAGGAGGTGCAATGGCTTCATTCACAGGCAGTGCCCCCGGATGTTATGGTGGTGCTGGGTACTCCAGTCATGCTGCTCCTCAGGCTCCAAGAGCACCTGCATTTCATCCTAGTCCTTACCCACCTGCATATGGAGGTTCACCATACGGAACTCCGCCTCCTAGACCTCAATCTGGAAGTTTTCCTGCAAACACACCTTATCCTGACGGGTATGCCCCTCCTGGTTCCGGGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

662

Amino Acids

71.66

Weight (kDa)

8.04

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	97 - 174	5.6e-08	SPRY domain
AAA_33	PF13671	250 - 395	1.4e-26	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1647
AarI	CACCTGC	2 cut(s)	1855, 1882
AatII	GACGTC	1 cut(s)	239
Acc36I	ACCTGC	4 cut(s)	1150, 1685, 1855, 1882
Acc65I	GGTACC	1 cut(s)	1138
AccB1I	GGYRCC	3 cut(s)	268, 871, 1138
AccB7I	CCANNNNNTGG	1 cut(s)	1379
AccI	GTMKAC	1 cut(s)	1008
AccII	CGCG	3 cut(s)	18, 75, 90
AciI	CCGC	7 cut(s)	207, 280, 512, 551, 1341, 1396, 1904
AcoI	YGGCCR	2 cut(s)	1167, 1397
AcsI	RAATTY	4 cut(s)	568, 703, 939, 1519
AcuI	CTGAAG	3 cut(s)	51, 681, 1107
AcyI	GRCGYC	2 cut(s)	236, 269
AfaI	GTAC	5 cut(s)	508, 1140, 1669, 1811, 1982
AflIII	ACRYGT	1 cut(s)	1267
AhdI	GACNNNNNGTC	1 cut(s)	722
AjnI	CCWGG	3 cut(s)	874, 1675, 1969
AjuI	GAANNNNNNNTTGG	2 cut(s)	1148, 1180
AloI	GAACNNNNNNTCC	2 cut(s)	1891, 1923
AluBI	AGCT	7 cut(s)	23, 64, 346, 351, 1216, 1464, 1544
AluI	AGCT	7 cut(s)	23, 64, 346, 351, 1216, 1464, 1544
Alw21I	GWGCWC	3 cut(s)	691, 816, 1846
Alw26I	GTCTC	2 cut(s)	730, 1258
AlwNI	CAGNNNCTG	1 cut(s)	1676
AoxI	GGCC	4 cut(s)	328, 674, 1167, 1397
ApeKI	GCWGC	5 cut(s)	225, 277, 965, 1706, 1823
ApoI	RAATTY	4 cut(s)	568, 703, 939, 1519
Asp700I	GAANNNNTTC	2 cut(s)	1115, 1624
Asp718I	GGTACC	1 cut(s)	1138
AspLEI	GCGC	2 cut(s)	75, 271
AspS9I	GGNCC	4 cut(s)	174, 716, 1530, 1565
AsuC2I	CCSGG	3 cut(s)	293, 1788, 1978
AsuII	TTCGAA	2 cut(s)	380, 485
AvaII	GGWCC	4 cut(s)	174, 716, 1530, 1565
AxyI	CCTNAGG	2 cut(s)	775, 1830
BaeGI	GKGCMC	1 cut(s)	1786
BaeI	ACNNNNGTAYC	2 cut(s)	1801, 1834
BalI	TGGCCA	1 cut(s)	1169
BanI	GGYRCC	3 cut(s)	268, 871, 1138
BanII	GRGCYC	2 cut(s)	48, 882
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	3 cut(s)	691, 816, 1846
BbvI	GCAGC	5 cut(s)	212, 289, 977, 1693, 1810
BccI	CCATC	6 cut(s)	250, 641, 692, 751, 1542, 1620
BceAI	ACGGC	2 cut(s)	282, 525
BciT130I	CCWGG	3 cut(s)	876, 1677, 1971
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	3 cut(s)	293, 1788, 1978
BcoDI	GTCTC	2 cut(s)	730, 1258
BfaI	CTAG	9 cut(s)	41, 104, 183, 857, 1599, 1725, 1748, 1860, 1911
BfmI	CTRYAG	1 cut(s)	1560
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	4 cut(s)	1150, 1685, 1855, 1882
BisI	GCNGC	6 cut(s)	226, 278, 966, 1397, 1707, 1824
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	6 cut(s)	227, 279, 967, 1398, 1708, 1825
Bme1390I	CCNGG	6 cut(s)	293, 876, 1677, 1788, 1971, 1978
Bme18I	GGWCC	4 cut(s)	174, 716, 1530, 1565
BmeRI	GACNNNNNGTC	1 cut(s)	722
BmgT120I	GGNCC	4 cut(s)	174, 716, 1530, 1565
BmiI	GGNNCC	7 cut(s)	270, 717, 873, 1140, 1532, 1836, 1975
BmrFI	CCNGG	6 cut(s)	293, 876, 1677, 1788, 1971, 1978
BmsI	GCATC	2 cut(s)	14, 1138
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	2 cut(s)	1621, 1798
Bpu1102I	GCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	2 cut(s)	380, 485
BpuEI	CTTGAG	2 cut(s)	713, 904
BpuMI	CCSGG	3 cut(s)	293, 1788, 1978
BsaHI	GRCGYC	2 cut(s)	236, 269
BsaJI	CCNNGG	5 cut(s)	331, 677, 875, 1675, 1786
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	617, 647, 1891, 1921
Bse1I	ACTGG	6 cut(s)	208, 387, 471, 1453, 1550, 1815
Bse21I	CCTNAGG	2 cut(s)	775, 1830
Bse3DI	GCAATG	2 cut(s)	130, 1767
BseBI	CCWGG	3 cut(s)	876, 1677, 1971
BseDI	CCNNGG	5 cut(s)	331, 677, 875, 1675, 1786
BseGI	GGATG	6 cut(s)	433, 703, 1201, 1279, 1796, 1855
BseMI	GCAATG	2 cut(s)	130, 1767
BseMII	CTCAG	4 cut(s)	338, 789, 810, 1844
BseNI	ACTGG	6 cut(s)	208, 387, 471, 1453, 1550, 1815
BseRI	GAGGAG	2 cut(s)	966, 1818
BseSI	GKGCMC	1 cut(s)	1786
BseXI	GCAGC	5 cut(s)	212, 289, 977, 1693, 1810
BseYI	CCCAGC	2 cut(s)	527, 1805
Bsh1236I	CGCG	3 cut(s)	18, 75, 90
BshFI	GGCC	4 cut(s)	330, 676, 1169, 1399
BshNI	GGYRCC	3 cut(s)	268, 871, 1138
BsiHKAI	GWGCWC	3 cut(s)	691, 816, 1846
BsiSI	CCGG	6 cut(s)	177, 272, 292, 1730, 1788, 1977
BslFI	GGGAC	5 cut(s)	379, 641, 729, 856, 1570
BsmAI	GTCTC	2 cut(s)	730, 1258
BsmFI	GGGAC	5 cut(s)	379, 641, 729, 856, 1570
BsmI	GAATGC	2 cut(s)	388, 1021
BsnI	GGCC	4 cut(s)	330, 676, 1169, 1399
Bsp119I	TTCGAA	2 cut(s)	380, 485
Bsp1286I	GDGCHC	6 cut(s)	48, 691, 816, 882, 1786, 1846
Bsp143I	GATC	1 cut(s)	994
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	7 cut(s)	207, 280, 512, 551, 1341, 1396, 1904
BspANI	GGCC	4 cut(s)	330, 676, 1169, 1399
BspCNI	CTCAG	4 cut(s)	339, 788, 811, 1843
BspFNI	CGCG	3 cut(s)	18, 75, 90
BspLI	GGNNCC	7 cut(s)	270, 717, 873, 1140, 1532, 1836, 1975
BspMAI	CTGCAG	1 cut(s)	1564
BspMI	ACCTGC	4 cut(s)	1150, 1685, 1855, 1882
BspT104I	TTCGAA	2 cut(s)	380, 485
BspT107I	GGYRCC	3 cut(s)	268, 871, 1138
BsrDI	GCAATG	2 cut(s)	130, 1767
BsrI	ACTGG	6 cut(s)	208, 387, 471, 1453, 1550, 1815
BssECI	CCNNGG	5 cut(s)	331, 677, 875, 1675, 1786
BssMI	GATC	1 cut(s)	994
BssNAI	GTATAC	1 cut(s)	1009
BssNI	GRCGYC	2 cut(s)	236, 269
BssT1I	CCWWGG	2 cut(s)	331, 677
Bst1107I	GTATAC	1 cut(s)	1009
Bst2UI	CCWGG	3 cut(s)	876, 1677, 1971
Bst4CI	ACNGT	4 cut(s)	218, 407, 720, 1050
Bst6I	CTCTTC	5 cut(s)	450, 491, 657, 1083, 1106
BstACI	GRCGYC	2 cut(s)	236, 269
BstBI	TTCGAA	2 cut(s)	380, 485
BstC8I	GCNNGC	2 cut(s)	472, 771
BstDEI	CTNAG	4 cut(s)	347, 775, 819, 1830
BstENI	CCTNNNNNAGG	1 cut(s)	774
BstF5I	GGATG	6 cut(s)	433, 703, 1201, 1279, 1796, 1855
BstFNI	CGCG	3 cut(s)	18, 75, 90
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	75, 271
BstKTI	GATC	1 cut(s)	997
BstMAI	GTCTC	2 cut(s)	730, 1258
BstMBI	GATC	1 cut(s)	994
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 96, 151, 277, 1638, 1832, 1841
BstNI	CCWGG	3 cut(s)	876, 1677, 1971
BstNSI	RCATGY	1 cut(s)	1271
BstSCI	CCNGG	6 cut(s)	291, 874, 1675, 1786, 1969, 1976
BstSFI	CTRYAG	1 cut(s)	1560
BstSLI	GKGCMC	1 cut(s)	1786
BstUI	CGCG	3 cut(s)	18, 75, 90
BstV1I	GCAGC	5 cut(s)	212, 289, 977, 1693, 1810
BstV2I	GAAGAC	1 cut(s)	39
BstZ17I	GTATAC	1 cut(s)	1009
Bsu36I	CCTNAGG	2 cut(s)	775, 1830
BsuRI	GGCC	4 cut(s)	330, 676, 1169, 1399
BtsCI	GGATG	6 cut(s)	433, 703, 1201, 1279, 1796, 1855
BtsI	GCAGTG	2 cut(s)	1158, 1786
BtsIMutI	CAGTG	6 cut(s)	27, 464, 933, 1158, 1446, 1786
BveI	ACCTGC	4 cut(s)	1150, 1685, 1855, 1882
Cac8I	GCNNGC	2 cut(s)	472, 771
CaiI	CAGNNNCTG	1 cut(s)	1676
CfoI	GCGC	2 cut(s)	75, 271
Cfr13I	GGNCC	4 cut(s)	174, 716, 1530, 1565
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	5 cut(s)	507, 1139, 1668, 1810, 1981
CviAII	CATG	3 cut(s)	599, 1268, 1820
CviQI	GTAC	5 cut(s)	507, 1139, 1668, 1810, 1981
DdeI	CTNAG	4 cut(s)	347, 775, 819, 1830
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	1 cut(s)	996
DpnII	GATC	1 cut(s)	994
DriI	GACNNNNNGTC	1 cut(s)	722
EaeI	YGGCCR	2 cut(s)	1167, 1397
Eam1104I	CTCTTC	5 cut(s)	450, 491, 657, 1083, 1106
Eam1105I	GACNNNNNGTC	1 cut(s)	722
EarI	CTCTTC	5 cut(s)	450, 491, 657, 1083, 1106
EciI	GGCGGA	2 cut(s)	566, 1893
Eco130I	CCWWGG	2 cut(s)	331, 677
Eco147I	AGGCCT	2 cut(s)	330, 676
Eco24I	GRGCYC	2 cut(s)	48, 882
Eco47I	GGWCC	4 cut(s)	174, 716, 1530, 1565
Eco57I	CTGAAG	3 cut(s)	51, 681, 1107
Eco81I	CCTNAGG	2 cut(s)	775, 1830
EcoNI	CCTNNNNNAGG	1 cut(s)	774
EcoRI	GAATTC	2 cut(s)	703, 1519
EcoRII	CCWGG	3 cut(s)	874, 1675, 1969
EcoT14I	CCWWGG	2 cut(s)	331, 677
EcoT38I	GRGCYC	2 cut(s)	48, 882
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	331, 677
FaeI	CATG	3 cut(s)	602, 1271, 1823
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 636, 668
FaqI	GGGAC	5 cut(s)	379, 641, 729, 856, 1570
FatI	CATG	3 cut(s)	598, 1267, 1819
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	2 cut(s)	1503, 1879
FbaI	TGATCA	1 cut(s)	994
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	6 cut(s)	226, 278, 966, 1397, 1707, 1824
FokI	GGATG	6 cut(s)	440, 710, 1208, 1286, 1803, 1842
FriOI	GRGCYC	2 cut(s)	48, 882
Fsp4HI	GCNGC	6 cut(s)	226, 278, 966, 1397, 1707, 1824
FspBI	CTAG	9 cut(s)	41, 104, 183, 857, 1599, 1725, 1748, 1860, 1911
GlaI	GCGC	2 cut(s)	74, 270
GluI	GCNGC	6 cut(s)	226, 278, 966, 1397, 1707, 1824
GsaI	CCCAGC	2 cut(s)	531, 1809
GsuI	CTGGAG	2 cut(s)	1621, 1798
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	330, 676, 1169, 1399
HapII	CCGG	6 cut(s)	177, 272, 292, 1730, 1788, 1977
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	75, 271
Hin1I	GRCGYC	2 cut(s)	236, 269
Hin1II	CATG	3 cut(s)	602, 1271, 1823
Hin6I	GCGC	2 cut(s)	73, 269
HinP1I	GCGC	2 cut(s)	73, 269
HincII	GTYRAC	1 cut(s)	1444
HindII	GTYRAC	1 cut(s)	1444
HinfI	GANTC	6 cut(s)	79, 283, 448, 1116, 1256, 1387
HpaII	CCGG	6 cut(s)	177, 272, 292, 1730, 1788, 1977
Hpy166II	GTNNAC	6 cut(s)	1009, 1025, 1031, 1370, 1444, 1889
Hpy188I	TCNGA	7 cut(s)	400, 730, 921, 999, 1121, 1210, 1530
Hpy8I	GTNNAC	6 cut(s)	1009, 1025, 1031, 1370, 1444, 1889
Hpy99I	CGWCG	2 cut(s)	95, 241
HpyAV	CCTTC	4 cut(s)	113, 862, 1090, 1422
HpyCH4III	ACNGT	4 cut(s)	218, 407, 720, 1050
HpyCH4IV	ACGT	3 cut(s)	236, 916, 1027
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 96, 151, 277, 1638, 1832, 1841
HpyF3I	CTNAG	4 cut(s)	347, 775, 819, 1830
HpySE526I	ACGT	3 cut(s)	236, 916, 1027
Hsp92I	GRCGYC	2 cut(s)	236, 269
Hsp92II	CATG	3 cut(s)	602, 1271, 1823
HspAI	GCGC	2 cut(s)	73, 269
KasI	GGCGCC	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	1142
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	1 cut(s)	994
LmnI	GCTCC	6 cut(s)	28, 274, 1541, 1691, 1831, 1840
Lsp1109I	GCAGC	5 cut(s)	212, 289, 977, 1693, 1810
LweI	GCATC	2 cut(s)	14, 1138
MaeI	CTAG	9 cut(s)	41, 104, 183, 857, 1599, 1725, 1748, 1860, 1911
MaeII	ACGT	3 cut(s)	236, 916, 1027
MaeIII	GTNAC	2 cut(s)	232, 1685
MalI	GATC	1 cut(s)	996
MboI	GATC	1 cut(s)	994
MhlI	GDGCHC	6 cut(s)	48, 691, 816, 882, 1786, 1846
MlsI	TGGCCA	1 cut(s)	1169
MluNI	TGGCCA	1 cut(s)	1169
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	1396
Mox20I	TGGCCA	1 cut(s)	1169
MroXI	GAANNNNTTC	2 cut(s)	1115, 1624
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	1 cut(s)	945
MslI	CAYNNNNRTG	1 cut(s)	1272
Msp20I	TGGCCA	1 cut(s)	1169
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	6 cut(s)	177, 272, 292, 1730, 1788, 1977
MspR9I	CCNGG	6 cut(s)	293, 876, 1677, 1788, 1971, 1978
Mva1269I	GAATGC	2 cut(s)	388, 1021
MvaI	CCWGG	3 cut(s)	876, 1677, 1971
MvnI	CGCG	3 cut(s)	18, 75, 90
MwoI	GCNNNNNNNGC	7 cut(s)	70, 96, 151, 277, 1638, 1832, 1841
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	3 cut(s)	293, 1788, 1978
NdeI	CATATG	2 cut(s)	1503, 1879
NdeII	GATC	1 cut(s)	994
NlaIII	CATG	3 cut(s)	602, 1271, 1823
NlaIV	GGNNCC	7 cut(s)	270, 717, 873, 1140, 1532, 1836, 1975
NmuCI	GTSAC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	1271
NspV	TTCGAA	2 cut(s)	380, 485
PaqCI	CACCTGC	2 cut(s)	1855, 1882
PceI	AGGCCT	2 cut(s)	330, 676
PciI	ACATGT	1 cut(s)	1267
PctI	GAATGC	2 cut(s)	388, 1021
PdmI	GAANNNNTTC	2 cut(s)	1115, 1624
PfeI	GAWTC	5 cut(s)	79, 283, 448, 1116, 1256
PflMI	CCANNNNNTGG	1 cut(s)	1379
PkrI	GCNGC	6 cut(s)	227, 279, 967, 1398, 1708, 1825
PleI	GAGTC	1 cut(s)	1395
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	1395
PscI	ACATGT	1 cut(s)	1267
PsiI	TTATAA	1 cut(s)	1647
Psp6I	CCWGG	3 cut(s)	874, 1675, 1969
PspFI	CCCAGC	2 cut(s)	527, 1805
PspGI	CCWGG	3 cut(s)	874, 1675, 1969
PspN4I	GGNNCC	7 cut(s)	270, 717, 873, 1140, 1532, 1836, 1975
PspPI	GGNCC	4 cut(s)	174, 716, 1530, 1565
PstI	CTGCAG	1 cut(s)	1564
PstNI	CAGNNNCTG	1 cut(s)	1676
RsaI	GTAC	5 cut(s)	508, 1140, 1669, 1811, 1982
RsaNI	GTAC	5 cut(s)	507, 1139, 1668, 1810, 1981
RseI	CAYNNNNRTG	1 cut(s)	1272
SaqAI	TTAA	1 cut(s)	945
SatI	GCNGC	6 cut(s)	226, 278, 966, 1397, 1707, 1824
Sau3AI	GATC	1 cut(s)	994
Sau96I	GGNCC	4 cut(s)	174, 716, 1530, 1565
SchI	GAGTC	1 cut(s)	1396
ScrFI	CCNGG	6 cut(s)	293, 876, 1677, 1788, 1971, 1978
SduI	GDGCHC	6 cut(s)	48, 691, 816, 882, 1786, 1846
SfaNI	GCATC	2 cut(s)	14, 1138
SfcI	CTRYAG	1 cut(s)	1560
SfoI	GGCGCC	1 cut(s)	270
SfuI	TTCGAA	2 cut(s)	380, 485
SinI	GGWCC	4 cut(s)	174, 716, 1530, 1565
SmiMI	CAYNNNNRTG	1 cut(s)	1272
SmlI	CTYRAG	2 cut(s)	692, 883
SmoI	CTYRAG	2 cut(s)	692, 883
SseBI	AGGCCT	2 cut(s)	330, 676
SsiI	CCGC	7 cut(s)	207, 280, 512, 551, 1341, 1396, 1904
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	9 cut(s)	41, 104, 183, 857, 1599, 1725, 1748, 1860, 1911
StuI	AGGCCT	2 cut(s)	330, 676
StyD4I	CCNGG	6 cut(s)	291, 874, 1675, 1786, 1969, 1976
StyI	CCWWGG	2 cut(s)	331, 677
TaaI	ACNGT	4 cut(s)	218, 407, 720, 1050
TaiI	ACGT	3 cut(s)	239, 919, 1030
TaqI	TCGA	5 cut(s)	50, 93, 133, 380, 485
TauI	GCSGC	1 cut(s)	1399
TfiI	GAWTC	5 cut(s)	79, 283, 448, 1116, 1256
Tru1I	TTAA	1 cut(s)	945
Tru9I	TTAA	1 cut(s)	945
TscAI	CASTG	6 cut(s)	34, 471, 940, 1158, 1453, 1786
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	5 cut(s)	225, 277, 965, 1706, 1823
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	9 cut(s)	881, 1109, 1124, 1173, 1295, 1317, 1512, 1758, 1844
TspGWI	ACGGA	2 cut(s)	1704, 1911
TspRI	CASTG	6 cut(s)	34, 471, 940, 1158, 1453, 1786
Van91I	CCANNNNNTGG	1 cut(s)	1379
VpaK11BI	GGWCC	4 cut(s)	174, 716, 1530, 1565
XagI	CCTNNNNNAGG	1 cut(s)	774
XapI	RAATTY	4 cut(s)	568, 703, 939, 1519
XbaI	TCTAGA	1 cut(s)	856
XceI	RCATGY	1 cut(s)	1271
XmiI	GTMKAC	1 cut(s)	1008
XmnI	GAANNNNTTC	2 cut(s)	1115, 1624
XspI	CTAG	9 cut(s)	41, 104, 183, 857, 1599, 1725, 1748, 1860, 1911
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.