Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2203169 .. 2204948

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGGAAACTGACCCTGAAGACCGGAATATTTGCCGGGTTGGTATTTCTAGAGGGGAAGATGTGGTGGGAAGCCTAGGGGAAACAAGCCACAGCTTTGGATATGAGGGCACTGGAAAATTCTGGAATGCTACGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAATCTTGAAGAAAAGCCCTTGGCTTCCATTTCTTTTTCCAAGAATGGAAAGTGTTTGGGTACGGCGATGAAGTTCAATGCAGCCGTGGATCCTGAAGTGAAGAATTTTCAATGGGAATCTGCCTTTTTCCCTCACCTTCTGTTGAAAAATGTGGAAGTGGAGTTGCAGTTCAGTGTTGAAGATGGACTTGTTCTTGAAGATGGATTTAAGCCTTGGGCGGATGCTCTTGGGGATGGAAATGCGATTGGGGGACCGGTTTTTGATGATCCAAAGGATTGTGAAGTGATGATGATGGTGGGTATGCCTGCCTCAGGCAAAACAACTTGGGCAGAGAAATGGGTGAAAGAGCACCCAGAGAAGCGATATGTTTTTGTTGGGATATACATGGTTTTTGACCAAATGAAGGTGCCAGGGCACTTGCCAACCGTCAGAGCAGCCACCACTCCTCGCAATTACATTCTTGATAGCACATATCTAAAGAAGGGTGAACGTCAGTATGAACTTAGGCAGTTCAATCTGTTCAAGAAGATTGCTGTTGTGGTGTTTCCAAGCCCCGAAGAGGTGAAGGCTCGTTTGCTGCAAAGATTTGATGATTTGGGATTTTTGGTACACGCTGAAATAATGAATGAATTGTTGGGCAATTTTGTTTTACCTGTCAGCAAGGATGTGCCTTGTTCAGATGAGCTTTTTGATGAGGTTATGTTCGTGGAACTCAACAGAGACGAATCACATAAACTTTTGGAGGAGATGAAGCAGGAAGAATCTGATTTGAACTCGAATGACTCTTCGCCGTATTCCTGCAAAAACTTTGACGAGTCTTATCCTTTTTCACCAAATTATGGGGGGAGTCATGTCTTGCCATGTCCCACTGCTTCACCGCAATACAAAGGAGCTTCAGCAGTCAACACCTGTGTTGCCACTAACCCCTATCCTAGTCCAGCGTTTCAACCCTGTGCAATTGCTTCAATCACAGGCAATGCCCCTGGATGTTATGGTAATGCTGGATACTTGAATTGTGCGGCCCCACAGGCTTCAAGAGCACCTGCAGTTCTCCCTAGTCCTCCTTGTCATCTGCCCGGGAACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

426

Amino Acids

46.9

Weight (kDa)

4.91

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	11 - 90	1.1e-10	SPRY domain
AAA_33	PF13671	159 - 262	1.8e-10	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1243
Acc36I	ACCTGC	1 cut(s)	1243
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	1031
AciI	CCGC	3 cut(s)	410, 1070, 1211
AclWI	GGATC	3 cut(s)	275, 288, 452
AcsI	RAATTY	2 cut(s)	119, 295
AcuI	CTGAAG	3 cut(s)	39, 306, 1071
AfaI	GTAC	2 cut(s)	253, 801
AfiI	CCNNNNNNNGG	5 cut(s)	149, 503, 595, 751, 1031
AgeI	ACCGGT	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	601, 1174
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	3 cut(s)	96, 877, 1085
AluI	AGCT	3 cut(s)	96, 877, 1085
Alw21I	GWGCWC	2 cut(s)	543, 1234
Alw26I	GTCTC	2 cut(s)	144, 906
AlwI	GGATC	3 cut(s)	275, 288, 452
Ama87I	CYCGRG	1 cut(s)	1268
AoxI	GGCC	1 cut(s)	1212
ApeKI	GCWGC	3 cut(s)	272, 626, 769
ApoI	RAATTY	2 cut(s)	119, 295
AsiGI	ACCGGT	1 cut(s)	445
AspA2I	CCTAGG	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	443, 1213
AsuC2I	CCSGG	3 cut(s)	38, 1269, 1270
AsuHPI	GGTGA	7 cut(s)	164, 317, 544, 689, 766, 1014, 1059
AvaI	CYCGRG	1 cut(s)	1268
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	502
BaeGI	GKGCMC	2 cut(s)	113, 609
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	543, 1234
BbvI	GCAGC	3 cut(s)	284, 638, 756
BccI	CCATC	4 cut(s)	368, 386, 419, 478
BceAI	ACGGC	3 cut(s)	260, 270, 967
BciT130I	CCWGG	2 cut(s)	603, 1176
BciVI	GTATCC	1 cut(s)	1190
BcnI	CCSGG	3 cut(s)	38, 1269, 1270
BcoDI	GTCTC	2 cut(s)	144, 906
BfaI	CTAG	4 cut(s)	51, 77, 1125, 1248
BfmI	CTRYAG	1 cut(s)	1236
BfuAI	ACCTGC	1 cut(s)	1243
BfuI	GTATCC	1 cut(s)	1190
BglI	GCCNNNNNGGC	1 cut(s)	1220
BisI	GCNGC	4 cut(s)	273, 627, 770, 1212
BlnI	CCTAGG	1 cut(s)	76
BlsI	GCNGC	4 cut(s)	274, 628, 771, 1213
Bme1390I	CCNGG	5 cut(s)	38, 603, 1176, 1269, 1270
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	1 cut(s)	1268
BmgT120I	GGNCC	2 cut(s)	443, 1213
BmiI	GGNNCC	5 cut(s)	282, 444, 600, 1215, 1274
BmrFI	CCNGG	5 cut(s)	38, 603, 1176, 1269, 1270
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	27
BpuMI	CCSGG	3 cut(s)	38, 1269, 1270
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	7 cut(s)	76, 210, 276, 404, 602, 1174, 1268
BsaWI	WCCGGW	2 cut(s)	24, 445
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 344, 374
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 503, 595, 751, 1031
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	1174
BseBI	CCWGG	2 cut(s)	603, 1176
BseDI	CCNNGG	7 cut(s)	76, 210, 276, 404, 602, 1174, 1268
BseGI	GGATG	4 cut(s)	418, 430, 862, 1184
BseLI	CCNNNNNNNGG	5 cut(s)	149, 503, 595, 751, 1031
BseMI	GCAATG	1 cut(s)	1174
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	627, 950
BseSI	GKGCMC	2 cut(s)	113, 609
BseXI	GCAGC	3 cut(s)	284, 638, 756
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	1214
BshNI	GGYRCC	1 cut(s)	598
BshTI	ACCGGT	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	543, 1234
BsiHKCI	CYCGRG	1 cut(s)	1268
BsiSI	CCGG	4 cut(s)	25, 37, 446, 1269
BslFI	GGGAC	2 cut(s)	456, 1041
BslI	CCNNNNNNNGG	5 cut(s)	149, 503, 595, 751, 1031
BsmAI	GTCTC	2 cut(s)	144, 906
BsmBI	CGTCTC	1 cut(s)	906
BsmFI	GGGAC	2 cut(s)	456, 1041
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	1214
Bso31I	GGTCTC	1 cut(s)	144
BsoBI	CYCGRG	1 cut(s)	1268
Bsp1286I	GDGCHC	4 cut(s)	113, 543, 609, 1234
Bsp143I	GATC	2 cut(s)	280, 457
BspACI	CCGC	3 cut(s)	410, 1070, 1211
BspANI	GGCC	1 cut(s)	1214
BspCNI	CTCAG	1 cut(s)	515
BspLI	GGNNCC	5 cut(s)	282, 444, 600, 1215, 1274
BspMAI	CTGCAG	1 cut(s)	1240
BspMI	ACCTGC	1 cut(s)	1243
BspPI	GGATC	3 cut(s)	275, 288, 452
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	1174
BsrFI	RCCGGY	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	7 cut(s)	76, 210, 276, 404, 602, 1174, 1268
BssMI	GATC	2 cut(s)	280, 457
BssT1I	CCWWGG	3 cut(s)	76, 210, 404
Bst2UI	CCWGG	2 cut(s)	603, 1176
Bst4CI	ACNGT	1 cut(s)	619
Bst6I	CTCTTC	2 cut(s)	744, 982
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	502, 695
BstDSI	CCRYGG	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	4 cut(s)	418, 430, 862, 1184
BstKTI	GATC	2 cut(s)	283, 460
BstMAI	GTCTC	2 cut(s)	144, 906
BstMBI	GATC	2 cut(s)	280, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	1220, 1229
BstNI	CCWGG	2 cut(s)	603, 1176
BstSCI	CCNGG	5 cut(s)	36, 601, 1174, 1267, 1268
BstSFI	CTRYAG	1 cut(s)	1236
BstSLI	GKGCMC	2 cut(s)	113, 609
BstV1I	GCAGC	3 cut(s)	284, 638, 756
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	1190
BsuRI	GGCC	1 cut(s)	1214
BtgI	CCRYGG	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	4 cut(s)	418, 430, 862, 1184
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	3 cut(s)	111, 370, 1059
BveI	ACCTGC	1 cut(s)	1243
Cac8I	GCNNGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	443, 1213
Cfr9I	CCCGGG	1 cut(s)	1268
Csp6I	GTAC	2 cut(s)	252, 800
CspAI	ACCGGT	1 cut(s)	445
CviAII	CATG	3 cut(s)	577, 1043, 1053
CviQI	GTAC	2 cut(s)	252, 800
DdeI	CTNAG	2 cut(s)	502, 695
DpnI	GATC	2 cut(s)	282, 459
DpnII	GATC	2 cut(s)	280, 457
Eam1104I	CTCTTC	2 cut(s)	744, 982
EarI	CTCTTC	2 cut(s)	744, 982
EciI	GGCGGA	1 cut(s)	425
Eco130I	CCWWGG	3 cut(s)	76, 210, 404
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	3 cut(s)	39, 306, 1071
Eco81I	CCTNAGG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	1268
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	601, 1174
EcoT14I	CCWWGG	3 cut(s)	76, 210, 404
ErhI	CCWWGG	3 cut(s)	76, 210, 404
Esp3I	CGTCTC	1 cut(s)	906
FaeI	CATG	3 cut(s)	580, 1046, 1056
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	2 cut(s)	456, 1041
FatI	CATG	3 cut(s)	576, 1042, 1052
Fnu4HI	GCNGC	4 cut(s)	273, 627, 770, 1212
FokI	GGATG	4 cut(s)	425, 437, 869, 1191
Fsp4HI	GCNGC	4 cut(s)	273, 627, 770, 1212
FspBI	CTAG	4 cut(s)	51, 77, 1125, 1248
GluI	GCNGC	4 cut(s)	273, 627, 770, 1212
HaeIII	GGCC	1 cut(s)	1214
HapII	CCGG	4 cut(s)	25, 37, 446, 1269
Hin1II	CATG	3 cut(s)	580, 1046, 1056
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HinfI	GANTC	6 cut(s)	308, 917, 953, 974, 1007, 1039
HpaII	CCGG	4 cut(s)	25, 37, 446, 1269
HphI	GGTGA	7 cut(s)	164, 317, 544, 689, 766, 1014, 1059
Hpy166II	GTNNAC	3 cut(s)	680, 802, 1096
Hpy188I	TCNGA	4 cut(s)	623, 871, 958, 1280
Hpy188III	TCNNGA	8 cut(s)	51, 124, 197, 284, 386, 653, 715, 1227
Hpy8I	GTNNAC	3 cut(s)	680, 802, 1096
HpyAV	CCTTC	4 cut(s)	338, 589, 667, 751
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	682
HpyCH4V	TGCA	7 cut(s)	188, 272, 358, 772, 993, 1148, 1238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1220, 1229
HpyF3I	CTNAG	2 cut(s)	502, 695
HpySE526I	ACGT	1 cut(s)	682
Hsp92II	CATG	3 cut(s)	580, 1046, 1056
Kzo9I	GATC	2 cut(s)	280, 457
LmnI	GCTCC	1 cut(s)	1082
Lsp1109I	GCAGC	3 cut(s)	284, 638, 756
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	4 cut(s)	51, 77, 1125, 1248
MaeII	ACGT	1 cut(s)	682
MalI	GATC	2 cut(s)	282, 459
MboI	GATC	2 cut(s)	280, 457
MfeI	CAATTG	1 cut(s)	1149
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	4 cut(s)	113, 543, 609, 1234
MluCI	AATT	8 cut(s)	119, 295, 643, 821, 832, 1027, 1149, 1204
MlyI	GAGTC	3 cut(s)	968, 1016, 1048
MseI	TTAA	1 cut(s)	399
MspI	CCGG	4 cut(s)	25, 37, 446, 1269
MspR9I	CCNGG	5 cut(s)	38, 603, 1176, 1269, 1270
MunI	CAATTG	1 cut(s)	1149
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	2 cut(s)	603, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	1220, 1229
NciI	CCSGG	3 cut(s)	38, 1269, 1270
NdeII	GATC	2 cut(s)	280, 457
NlaIII	CATG	3 cut(s)	580, 1046, 1056
NlaIV	GGNNCC	5 cut(s)	282, 444, 600, 1215, 1274
PaqCI	CACCTGC	1 cut(s)	1243
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	308, 917, 953
PflMI	CCANNNNNTGG	1 cut(s)	1031
PinAI	ACCGGT	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	274, 628, 771, 1213
PleI	GAGTC	3 cut(s)	968, 1015, 1047
PpsI	GAGTC	3 cut(s)	968, 1015, 1047
Psp6I	CCWGG	2 cut(s)	601, 1174
PspGI	CCWGG	2 cut(s)	601, 1174
PspN4I	GGNNCC	5 cut(s)	282, 444, 600, 1215, 1274
PspPI	GGNCC	2 cut(s)	443, 1213
PstI	CTGCAG	1 cut(s)	1240
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	2 cut(s)	253, 801
RsaNI	GTAC	2 cut(s)	252, 800
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	4 cut(s)	273, 627, 770, 1212
Sau3AI	GATC	2 cut(s)	280, 457
Sau96I	GGNCC	2 cut(s)	443, 1213
SchI	GAGTC	3 cut(s)	968, 1016, 1048
ScrFI	CCNGG	5 cut(s)	38, 603, 1176, 1269, 1270
SduI	GDGCHC	4 cut(s)	113, 543, 609, 1234
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	1236
SinI	GGWCC	1 cut(s)	443
SmaI	CCCGGG	1 cut(s)	1270
Sse9I	AATT	8 cut(s)	119, 295, 643, 821, 832, 1027, 1149, 1204
SsiI	CCGC	3 cut(s)	410, 1070, 1211
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	4 cut(s)	51, 77, 1125, 1248
StyD4I	CCNGG	5 cut(s)	36, 601, 1174, 1267, 1268
StyI	CCWWGG	3 cut(s)	76, 210, 404
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	1 cut(s)	685
TaqI	TCGA	1 cut(s)	968
TasI	AATT	8 cut(s)	119, 295, 643, 821, 832, 1027, 1149, 1204
TauI	GCSGC	1 cut(s)	1214
TfiI	GAWTC	3 cut(s)	308, 917, 953
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	3 cut(s)	118, 370, 1066
TseI	GCWGC	3 cut(s)	272, 626, 769
TspDTI	ATGAA	6 cut(s)	275, 608, 705, 830, 834, 956
TspGWI	ACGGA	1 cut(s)	132
TspMI	CCCGGG	1 cut(s)	1268
TspRI	CASTG	3 cut(s)	118, 370, 1066
Van91I	CCANNNNNTGG	1 cut(s)	1031
VpaK11BI	GGWCC	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	501
XapI	RAATTY	2 cut(s)	119, 295
XbaI	TCTAGA	1 cut(s)	50
XmaI	CCCGGG	1 cut(s)	1268
XmaJI	CCTAGG	1 cut(s)	76
XspI	CTAG	4 cut(s)	51, 77, 1125, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.