Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

36859634 .. 36860785

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCCGATGATCAGAATTGCTGCACCAAAAAGAGAGCACAGCAATGCGAATCAAAGTGGTCCGAGCTCCCAATTGAAATCGCAGATTTGATCTTGGAAAAGCTTGCGTCCATTGACATCCTTCGCTTTAAAGCAGTTTGTTCTTCTTGGAAGTATGCTGCAAACTCTTACATCACTGCACCTTATTACAAGCCATTGCCTCAATCTCCATGGCTCGTGCTTGGTAATGGTCAAGAAGACAACAGTTGCCGGTTTTTCAGTCTCGAAGAGAAAAAGGTCTATACCATCAAGAACATATTATTTGAAGGCTGTTGTGTGGGCTCATCACATGGGTGGCTGGTGATTATGAACAAGGATTCAATCTTAAATCTTTTCAATCCTGTTTCAGGTGAAAGCATTCAACTCTCAGATATTCGAGCTCTTGATGGCTTTTCCAGCTTTTCTAGTAGTGAAATATTGAAAGCTGTCCTTTCTTCGGAGCCGTCTGGCCGGAATAAGTTTTTCTTGACGATTTGCATTAGACAAACACCAAGAAGTAGGAGGTTTGATAAACTTGCAGTCTATAATCATGAAGACAAAACGTGGAGTCCCTTGCTCGTTAACCCTAGCTCTCGGGAGATTGTATTCCTCAACGGCAAACTATTCGCATTGTTACCAAATGTAGTACAAGTTTGGGACTTCGAGAAATCTCGTCATGATAGGACAAATTTATATATTTTCAAACGGGATCGATCTTTGACTCGTACTTACTTGGTGAAATACAGTCAATACTCTCGCTTCGTGGAGTCATTGGGTGAGATTTTGCGTGTGACGCTGGTTTTGGTCAAGAGCTTGGATGATAGTTCCCACAAAGAATCGTATTTTGAGGTCTATAAGATGAATTTGAGGCTTATAAGAAGTCGAGCTACGTGGGAGAAAGTGGAAAGTTTAGGTCACAGATTTATAATTTGGTGCCGAAATCGACCTTCGATAGCATTATCCGCCTTATATTTTACAGAATTTGAAGAAAACTCGATTTACTGTTATCATCGTCGTGGTTACGTTTTCGTGTACAACTTAAAAGATAAAGTTGTGAAGCCATGTTACAAATTTGATGAGTCCACAACGGATCAAGAACCGTTCTGGATTGTTCCCAATCTATCCCTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

383

Amino Acids

44.66

Weight (kDa)

8.95

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 56	4.2e-06	F-box domain
Beta-prop_KIB1-4	PF03478	85 - 352	1.7e-34	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	893, 944
AccB1I	GGYRCC	1 cut(s)	951
AciI	CCGC	1 cut(s)	981
AclWI	GGATC	2 cut(s)	735, 1116
AcoI	YGGCCR	2 cut(s)	3, 487
AcsI	RAATTY	4 cut(s)	706, 880, 998, 1088
AfaI	GTAC	3 cut(s)	666, 745, 1052
AfiI	CCNNNNNNNGG	2 cut(s)	386, 475
AgsI	TTSAA	8 cut(s)	77, 305, 360, 376, 401, 460, 721, 1004
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	8 cut(s)	67, 103, 419, 438, 464, 609, 831, 905
AluI	AGCT	8 cut(s)	67, 103, 419, 438, 464, 609, 831, 905
Alw21I	GWGCWC	3 cut(s)	40, 69, 421
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	735, 1116
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	2 cut(s)	3, 487
ApeKI	GCWGC	2 cut(s)	21, 158
ApoI	RAATTY	4 cut(s)	706, 880, 998, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	4 cut(s)	352, 401, 766, 806
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	951
BanII	GRGCYC	3 cut(s)	69, 323, 421
BarI	GAAGNNNNNNTAC	4 cut(s)	889, 921, 1067, 1099
BauI	CACGAG	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	243, 579
Bbv12I	GWGCWC	3 cut(s)	40, 69, 421
BbvI	GCAGC	2 cut(s)	8, 145
BccI	CCATC	2 cut(s)	293, 419
BceAI	ACGGC	2 cut(s)	466, 649
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	444, 606
BisI	GCNGC	2 cut(s)	22, 159
BlsI	GCNGC	2 cut(s)	23, 160
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	480, 953
BpiI	GAAGAC	2 cut(s)	243, 579
Bsa29I	ATCGAT	1 cut(s)	730
BsaAI	YACGTR	1 cut(s)	909
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 475
Bse118I	RCCGGY	1 cut(s)	249
Bse3DI	GCAATG	2 cut(s)	50, 194
BseCI	ATCGAT	1 cut(s)	730
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	117, 841
BseLI	CCNNNNNNNGG	2 cut(s)	386, 475
BseMI	GCAATG	2 cut(s)	50, 194
BseMII	CTCAG	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	8, 145
BsgI	GTGCAG	2 cut(s)	7, 162
BshFI	GGCC	2 cut(s)	5, 489
BshNI	GGYRCC	1 cut(s)	951
BshVI	ATCGAT	1 cut(s)	730
BsiHKAI	GWGCWC	3 cut(s)	40, 69, 421
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	250, 490
BslFI	GGGAC	2 cut(s)	573, 689
BslI	CCNNNNNNNGG	2 cut(s)	386, 475
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	2 cut(s)	573, 689
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	2 cut(s)	5, 489
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	4 cut(s)	40, 69, 323, 421
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	5 cut(s)	10, 90, 727, 731, 1108
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	981
BspANI	GGCC	2 cut(s)	5, 489
BspCNI	CTCAG	1 cut(s)	419
BspDI	ATCGAT	1 cut(s)	730
BspHI	TCATGA	2 cut(s)	568, 694
BspLI	GGNNCC	2 cut(s)	480, 953
BspPI	GGATC	2 cut(s)	735, 1116
BspT107I	GGYRCC	1 cut(s)	951
BsrDI	GCAATG	2 cut(s)	50, 194
BsrFI	RCCGGY	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	1050
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	5 cut(s)	10, 90, 727, 731, 1108
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	4 cut(s)	245, 764, 1022, 1119
Bst6I	CTCTTC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	909
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	209
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	117, 841
BstKTI	GATC	5 cut(s)	13, 93, 730, 734, 1111
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	5 cut(s)	10, 90, 727, 731, 1108
BstMWI	GCNNNNNNNGC	3 cut(s)	435, 811, 980
BstV1I	GCAGC	2 cut(s)	8, 145
BstV2I	GAAGAC	2 cut(s)	243, 579
Bsu15I	ATCGAT	1 cut(s)	730
BsuRI	GGCC	2 cut(s)	5, 489
BsuTUI	ATCGAT	1 cut(s)	730
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	117, 841
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	2 cut(s)	568, 694
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	730
CseI	GACGC	2 cut(s)	96, 820
Csp6I	GTAC	3 cut(s)	665, 744, 1051
CviAII	CATG	5 cut(s)	210, 329, 569, 695, 1080
CviQI	GTAC	3 cut(s)	665, 744, 1051
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	5 cut(s)	12, 92, 729, 733, 1110
DpnII	GATC	5 cut(s)	10, 90, 727, 731, 1108
DraI	TTTAAA	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	3, 487
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	970
Ecl136II	GAGCTC	2 cut(s)	67, 419
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	3 cut(s)	69, 323, 421
Eco47I	GGWCC	1 cut(s)	60
Eco53kI	GAGCTC	2 cut(s)	67, 419
Eco88I	CYCGRG	1 cut(s)	612
EcoICRI	GAGCTC	2 cut(s)	67, 419
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	3 cut(s)	69, 323, 421
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	5 cut(s)	213, 332, 572, 698, 1083
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 488, 520
FaqI	GGGAC	2 cut(s)	573, 689
FatI	CATG	5 cut(s)	209, 328, 568, 694, 1079
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	22, 159
FokI	GGATG	2 cut(s)	104, 848
FriOI	GRGCYC	3 cut(s)	69, 323, 421
Fsp4HI	GCNGC	2 cut(s)	22, 159
FspBI	CTAG	2 cut(s)	444, 606
GluI	GCNGC	2 cut(s)	22, 159
HaeIII	GGCC	2 cut(s)	5, 489
HapII	CCGG	2 cut(s)	250, 490
HgaI	GACGC	2 cut(s)	96, 820
Hin1II	CATG	5 cut(s)	213, 332, 572, 698, 1083
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	7 cut(s)	50, 356, 586, 739, 785, 854, 1097
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	2 cut(s)	250, 490
HphI	GGTGA	4 cut(s)	352, 401, 766, 806
Hpy166II	GTNNAC	3 cut(s)	601, 1051, 1101
Hpy188I	TCNGA	4 cut(s)	15, 64, 409, 478
Hpy8I	GTNNAC	3 cut(s)	601, 1051, 1101
Hpy99I	CGWCG	1 cut(s)	1035
HpyAV	CCTTC	3 cut(s)	131, 299, 975
HpyCH4III	ACNGT	4 cut(s)	245, 764, 1022, 1119
HpyCH4IV	ACGT	3 cut(s)	581, 908, 1041
HpyCH4V	TGCA	5 cut(s)	24, 161, 179, 516, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	435, 811, 980
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	3 cut(s)	581, 908, 1041
Hsp92II	CATG	5 cut(s)	213, 332, 572, 698, 1083
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	5 cut(s)	10, 90, 727, 731, 1108
LmnI	GCTCC	2 cut(s)	72, 478
LpnPI	CCDG	9 cut(s)	263, 323, 372, 393, 448, 471, 503, 800, 1108
Lsp1109I	GCAGC	2 cut(s)	8, 145
MaeI	CTAG	2 cut(s)	444, 606
MaeII	ACGT	3 cut(s)	581, 908, 1041
MaeIII	GTNAC	5 cut(s)	651, 808, 932, 1037, 1082
MalI	GATC	5 cut(s)	12, 92, 729, 733, 1110
MboI	GATC	5 cut(s)	10, 90, 727, 731, 1108
MboII	GAAGA	6 cut(s)	135, 248, 278, 465, 584, 1016
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	4 cut(s)	40, 69, 323, 421
MluCI	AATT	7 cut(s)	16, 72, 706, 880, 945, 998, 1088
MlyI	GAGTC	4 cut(s)	595, 733, 794, 1106
MnlI	CCTC	5 cut(s)	210, 534, 638, 859, 879
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	4 cut(s)	129, 365, 600, 1058
MslI	CAYNNNNRTG	3 cut(s)	43, 331, 1032
MspI	CCGG	2 cut(s)	250, 490
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	435, 811, 980
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	10, 90, 727, 731, 1108
NlaIII	CATG	5 cut(s)	213, 332, 572, 698, 1083
NlaIV	GGNNCC	2 cut(s)	480, 953
NmuCI	GTSAC	2 cut(s)	808, 932
OliI	CACNNNNGTG	1 cut(s)	331
PagI	TCATGA	2 cut(s)	568, 694
PctI	GAATGC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	50, 356, 854
PkrI	GCNGC	2 cut(s)	23, 160
PleI	GAGTC	4 cut(s)	594, 733, 793, 1105
PpsI	GAGTC	4 cut(s)	594, 733, 793, 1105
Ppu21I	YACGTR	1 cut(s)	909
PsiI	TTATAA	2 cut(s)	893, 944
Psp124BI	GAGCTC	2 cut(s)	69, 421
PspN4I	GGNNCC	2 cut(s)	480, 953
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	3 cut(s)	666, 745, 1052
RsaNI	GTAC	3 cut(s)	665, 744, 1051
RseI	CAYNNNNRTG	3 cut(s)	43, 331, 1032
SacI	GAGCTC	2 cut(s)	69, 421
SaqAI	TTAA	4 cut(s)	129, 365, 600, 1058
SatI	GCNGC	2 cut(s)	22, 159
Sau3AI	GATC	5 cut(s)	10, 90, 727, 731, 1108
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	4 cut(s)	595, 733, 794, 1106
SduI	GDGCHC	4 cut(s)	40, 69, 323, 421
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	3 cut(s)	43, 331, 1032
Sse9I	AATT	7 cut(s)	16, 72, 706, 880, 945, 998, 1088
SsiI	CCGC	1 cut(s)	981
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	444, 606
SstI	GAGCTC	2 cut(s)	69, 421
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	4 cut(s)	245, 764, 1022, 1119
TaiI	ACGT	3 cut(s)	584, 911, 1044
TaqI	TCGA	8 cut(s)	264, 415, 681, 730, 901, 961, 968, 1013
TasI	AATT	7 cut(s)	16, 72, 706, 880, 945, 998, 1088
TatI	WGTACW	2 cut(s)	664, 1050
TfiI	GAWTC	3 cut(s)	50, 356, 854
Tru1I	TTAA	4 cut(s)	129, 365, 600, 1058
Tru9I	TTAA	4 cut(s)	129, 365, 600, 1058
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	808, 932
TseI	GCWGC	2 cut(s)	21, 158
Tsp45I	GTSAC	2 cut(s)	808, 932
TspDTI	ATGAA	3 cut(s)	362, 585, 893
TspGWI	ACGGA	1 cut(s)	1121
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	4 cut(s)	706, 880, 998, 1088
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	444, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.