RchiOBHm_Chr7g0240451

Heterogeneous nuclear ribonucleoprotein U-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003265
Physical Location & Seq
Forward (+)
66432183 .. 66433709
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21550

Sequence Viewer

Length: 972 bp
ATGGAGGACACTGACCCTGAAGACCAGAATCTTTGCCGGGTTGATATTTCTAGAGGGGATAATGTGGTGGGAAGCCTTGGGGAAACAAGCCACAGCTTTGGATATGAGGGCACTGGAAAATTCTGGAATGCTATGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAGTCTTGAAGAAAAGCCCTTGGCTTCCATTTCTTTTTCCAAGAATGGAAAGTGTTTGGGTACGGCGATGAAGTTCAATGCAGCCATGGATCCTGAAGTGAAGAATTTTCAATGGGAATTTGCCTTTTTCCCTCAGCTTCTGTTGAAAAATGTGGAAGTGGAGTTGCAGTTCAGTGTTGAAGATGAACTTGTTCTTGAAGATGGATTTAAGCCTTGCCTGGCTGCTCTTAGGGATGGAAATGCTATTGGGGGACCGGTTTTTGATGATCCAAAGGATTGTGAAATGATGATGATGGTGGGTATGCCTGCCTCAGGCAAAACAACTGGGGCAAAGAAATGGGTGAAAGACCACCCAGAGAAGCGATATGTTTTCGTTGGTATAAACATGGTTTTTGACCAAATGAAGATTGCTGTTGTGGTGTTTCCAAGCCCCGAAGAGGTGAAGGCTCGTTTGCTACAAAGATTTGATGATTTGGGATTTTTGGTACACGCTAAAATAATGAATGAATTGTTGGCCACTTTTGTTTTACCTGTCAGCAAGGATGTGACTTGTTCAGATGAGTTTTTTGATGAGGTTATGTTCGTGGAACTCAACAGAGACGAATCACATAATGTTTTGGAGGAGATGAAGCAGGAAGAATCTGATTTGAACTCAAATGACTCTTCGCCGTATTCCTGCAAAAACTTTGACGAGTCTTATCCTTTTTCACCAAATTATGGGGGGAGTCATGTCTTGCTATGTCCCACTCTTTCACCGCAATACAAAGGAGCTTCAACGTGA

Protein Analysis

323

Amino Acids

36.03

Weight (kDa)

4.59

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 11 - 89 3.2e-10 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 908
AciI CCGC 1 cut(s) 947
AclWI GGATC 3 cut(s) 275, 288, 452
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 3 cut(s) 119, 295, 308
AcuI CTGAAG 2 cut(s) 39, 306
AfaI GTAC 2 cut(s) 253, 678
AfiI CCNNNNNNNGG 4 cut(s) 149, 503, 628, 908
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 8 cut(s) 200, 268, 302, 337, 371, 389, 841, 966
AjnI CCWGG 1 cut(s) 408
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 96, 328, 962
AluI AGCT 3 cut(s) 96, 328, 962
Alw26I GTCTC 2 cut(s) 144, 783
AlwI GGATC 3 cut(s) 275, 288, 452
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 2 cut(s) 272, 413
ApoI RAATTY 3 cut(s) 119, 295, 308
AsiGI ACCGGT 1 cut(s) 445
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 443
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 5 cut(s) 164, 544, 643, 891, 936
AvaII GGWCC 1 cut(s) 443
AxyI CCTNAGG 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BalI TGGCCA 1 cut(s) 707
BamHI GGATCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 284, 400
BccI CCATC 3 cut(s) 386, 419, 478
BceAI ACGGC 2 cut(s) 270, 844
BciT130I CCWGG 1 cut(s) 410
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 144, 783
BfaI CTAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 273, 414
BlsI GCNGC 2 cut(s) 274, 415
Bme1390I CCNGG 2 cut(s) 38, 410
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 2 cut(s) 282, 444
BmrFI CCNGG 2 cut(s) 38, 410
BmrI ACTGGG 1 cut(s) 525
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 76, 210, 276
BsaWI WCCGGW 1 cut(s) 445
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 503, 628, 908
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 2 cut(s) 118, 520
Bse21I CCTNAGG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 3 cut(s) 76, 210, 276
BseGI GGATG 2 cut(s) 430, 739
BseLI CCNNNNNNNGG 4 cut(s) 149, 503, 628, 908
BseMII CTCAG 2 cut(s) 338, 516
BseNI ACTGG 2 cut(s) 118, 520
BseRI GAGGAG 1 cut(s) 827
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 2 cut(s) 284, 400
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 1 cut(s) 707
BshTI ACCGGT 1 cut(s) 445
BsiSI CCGG 2 cut(s) 37, 446
BslFI GGGAC 2 cut(s) 456, 918
BslI CCNNNNNNNGG 4 cut(s) 149, 503, 628, 908
BsmAI GTCTC 2 cut(s) 144, 783
BsmBI CGTCTC 1 cut(s) 783
BsmFI GGGAC 2 cut(s) 456, 918
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 280, 457
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 947
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 2 cut(s) 337, 515
BspLI GGNNCC 2 cut(s) 282, 444
BspPI GGATC 3 cut(s) 275, 288, 452
BspTNI GGTCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 2 cut(s) 118, 520
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 76, 210, 276
BssMI GATC 2 cut(s) 280, 457
BssT1I CCWWGG 3 cut(s) 76, 210, 276
Bst2UI CCWGG 1 cut(s) 410
Bst6I CTCTTC 2 cut(s) 621, 859
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 3 cut(s) 324, 419, 502
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 430, 739
BstKTI GATC 2 cut(s) 283, 460
BstMAI GTCTC 2 cut(s) 144, 783
BstMBI GATC 2 cut(s) 280, 457
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 2 cut(s) 36, 408
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 284, 400
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 502
BsuRI GGCC 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 2 cut(s) 430, 739
BtsIMutI CAGTG 3 cut(s) 9, 111, 370
Cac8I GCNNGC 1 cut(s) 498
CaiI CAGNNNCTG 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 443
Csp6I GTAC 2 cut(s) 252, 677
CspAI ACCGGT 1 cut(s) 445
CviAII CATG 3 cut(s) 277, 577, 920
CviQI GTAC 2 cut(s) 252, 677
DdeI CTNAG 3 cut(s) 324, 419, 502
DpnI GATC 2 cut(s) 282, 459
DpnII GATC 2 cut(s) 280, 457
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 2 cut(s) 621, 859
EarI CTCTTC 2 cut(s) 621, 859
Eco130I CCWWGG 3 cut(s) 76, 210, 276
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 39, 306
Eco81I CCTNAGG 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 408
EcoT14I CCWWGG 3 cut(s) 76, 210, 276
ErhI CCWWGG 3 cut(s) 76, 210, 276
Esp3I CGTCTC 1 cut(s) 783
FaeI CATG 3 cut(s) 280, 580, 923
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 2 cut(s) 456, 918
FatI CATG 3 cut(s) 276, 576, 919
Fnu4HI GCNGC 2 cut(s) 273, 414
FokI GGATG 2 cut(s) 437, 746
Fsp4HI GCNGC 2 cut(s) 273, 414
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 273, 414
HaeIII GGCC 1 cut(s) 707
HapII CCGG 2 cut(s) 37, 446
Hin1II CATG 3 cut(s) 280, 580, 923
HinfI GANTC 6 cut(s) 28, 794, 830, 851, 884, 916
HpaII CCGG 2 cut(s) 37, 446
HphI GGTGA 5 cut(s) 164, 544, 643, 891, 936
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 2 cut(s) 748, 835
Hpy188III TCNNGA 5 cut(s) 51, 124, 197, 284, 386
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 968
HpyCH4V TGCA 4 cut(s) 188, 272, 358, 870
HpyF3I CTNAG 3 cut(s) 324, 419, 502
HpySE526I ACGT 1 cut(s) 968
Hsp92II CATG 3 cut(s) 280, 580, 923
Kzo9I GATC 2 cut(s) 280, 457
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 2 cut(s) 284, 400
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 968
MaeIII GTNAC 1 cut(s) 736
MalI GATC 2 cut(s) 282, 459
MboI GATC 2 cut(s) 280, 457
MboII GAAGA 9 cut(s) 32, 212, 304, 383, 401, 607, 638, 839, 846
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 5 cut(s) 119, 295, 308, 698, 904
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 3 cut(s) 845, 893, 925
MnlI CCTC 8 cut(s) 47, 100, 129, 333, 511, 622, 757, 805
Mox20I TGGCCA 1 cut(s) 707
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 707
MseI TTAA 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 707
MspI CCGG 2 cut(s) 37, 446
MspR9I CCNGG 2 cut(s) 38, 410
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 410
NciI CCSGG 1 cut(s) 38
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 280, 457
NlaIII CATG 3 cut(s) 280, 580, 923
NlaIV GGNNCC 2 cut(s) 282, 444
NmuCI GTSAC 1 cut(s) 736
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 3 cut(s) 28, 794, 830
PflMI CCANNNNNTGG 1 cut(s) 908
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 2 cut(s) 274, 415
PleI GAGTC 3 cut(s) 845, 892, 924
PpsI GAGTC 3 cut(s) 845, 892, 924
Psp6I CCWGG 1 cut(s) 408
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 282, 444
PspPI GGNCC 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 253, 678
RsaNI GTAC 2 cut(s) 252, 677
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 273, 414
Sau3AI GATC 2 cut(s) 280, 457
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 3 cut(s) 845, 893, 925
ScrFI CCNGG 2 cut(s) 38, 410
SduI GDGCHC 1 cut(s) 113
SetI ASST 8 cut(s) 98, 140, 330, 633, 724, 768, 964, 971
SinI GGWCC 1 cut(s) 443
Sse9I AATT 5 cut(s) 119, 295, 308, 698, 904
SsiI CCGC 1 cut(s) 947
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 36, 408
StyI CCWWGG 3 cut(s) 76, 210, 276
TaiI ACGT 1 cut(s) 971
TasI AATT 5 cut(s) 119, 295, 308, 698, 904
TfiI GAWTC 3 cut(s) 28, 794, 830
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 3 cut(s) 16, 118, 370
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 2 cut(s) 272, 413
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 6 cut(s) 275, 390, 608, 707, 711, 833
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 3 cut(s) 16, 118, 370
Van91I CCANNNNNTGG 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 443
XagI CCTNNNNNAGG 1 cut(s) 501
XapI RAATTY 3 cut(s) 119, 295, 308
XbaI TCTAGA 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.