Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

36861799 .. 36865079

Gene Structure 3281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGAGATTCTTTAAACGAACATCAAATGAGTTATCATCACCCCTCATAGAGAGTGAAAGATCAAAACAGAGTCGGGTAGAAATTGATTTGGCTAATCTTCCTTCTGATCCTGGAGAAAGAACTAAAATTTCAGATTATCATCCCAATCTTAGGGATCAAATTAGAAGAGAGTATCTGCTAAGAGGTCCTTGTCAGCCTAGAAATCATCAGTTTGTCCAAACACAGTGCGGAGAAGGGAAACGAAGGTTTGTCTCTGATTGGTTTAATGACTTCCCTAATTGGTTAGAATATAGCGTAGCCAAAGATGCTGCATTTTGTTTGTGCTGCTATCTGTTCAAATCAAATGTTGGTGAGCAAGGAGGAGGTGATTGTTTTACTGGTATTGGTTTTCAAAATTGGAAGAAAAAAGAAAGATTGCATGATCAAAACCTGCCCCCAGTGCTTCTTCATAGTCAGGGCCAAGACAAAGAAATTGTACAGGAAACACGACTATGGGACGAAGGAGCTCAGAAAACAGTTACAATGAGGAAGAAAGAAGGACTATCTGATTACCGATATTTTCCCGAACCAGACCTTCGAGGAGTTTTCCTCACCCAGGACTATGTTGATGGTATTCATAACTCTTTGCCTGAACTTCCAGAAATGAAGCGTCGAAGGTATGAAAAGATGGGCCTAAGCATGCAGGACATTCTTTTCCTTGCTAATGACATGAATGTTGCAGAATTTTTTGATACCACTATTAAGAAGGGTGCTGATGCGAAGCTAGCTGCCAACTGGATAATGAGTGATATTGCTGCCTATATGAAAAATGAAGAGTTGTCCATCAATGAGGTCAAGCTTTCCCCCCAAGAGTTGGCTGAGTTAATAGCTTTCATAAAAGATGGGACTATTAGTGGGAAGATAGGGAAACAGATATTGTTTGAGCTACTAGCAAAAGGTGGTACTGTGAAGGGACTGATAGAAGAAAAAGATTTAGTTCAGATTGTAGATCCCGCTGAGATTGAGAAAATGGTGGAAAAGGTGTTGTCAGAGAATCCAAAGCAGCTGGACCAATATCGTGGTGGAAAGACTAAGCTGCAAGGTTATTTTGCTGGCCAGATAATGAAACTATCAAAAGGAAAAGCAAATCCAGGGCTTCTAAACAAGATTCTGTTAGAGAAATTAAATGCCAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

393

Amino Acids

44.93

Weight (kDa)

7.56

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GatB_N	PF02934	156 - 203	4.5e-12	GatB/GatE catalytic domain
GatB_Yqey	PF02637	242 - 389	2.3e-52	GatB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	856
AciI	CCGC	2 cut(s)	231, 996
AclWI	GGATC	3 cut(s)	104, 165, 986
AcoI	YGGCCR	1 cut(s)	1096
AcsI	RAATTY	2 cut(s)	129, 725
AfaI	GTAC	2 cut(s)	480, 946
AfiI	CCNNNNNNNGG	3 cut(s)	153, 598, 856
AgsI	TTSAA	2 cut(s)	340, 395
AjnI	CCWGG	3 cut(s)	112, 597, 1132
AluBI	AGCT	9 cut(s)	509, 766, 770, 841, 872, 928, 1048, 1078, 1179
AluI	AGCT	9 cut(s)	509, 766, 770, 841, 872, 928, 1048, 1078, 1179
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	3 cut(s)	104, 165, 986
AoxI	GGCC	3 cut(s)	460, 673, 1096
ApeKI	GCWGC	6 cut(s)	311, 327, 770, 797, 1045, 1078
ApoI	RAATTY	2 cut(s)	129, 725
AspS9I	GGNCC	4 cut(s)	188, 460, 673, 1051
AsuHPI	GGTGA	4 cut(s)	33, 365, 380, 586
AsuNHI	GCTAGC	1 cut(s)	766
AvaII	GGWCC	2 cut(s)	188, 1051
BalI	TGGCCA	1 cut(s)	1098
BanII	GRGCYC	1 cut(s)	511
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	6 cut(s)	298, 314, 757, 784, 1057, 1065
BccI	CCATC	4 cut(s)	605, 664, 833, 878
BciT130I	CCWGG	3 cut(s)	114, 599, 1134
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	201, 767, 932
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	6 cut(s)	312, 328, 771, 798, 1046, 1079
BlsI	GCNGC	6 cut(s)	313, 329, 772, 799, 1047, 1080
Bme1390I	CCNGG	3 cut(s)	114, 599, 1134
Bme18I	GGWCC	2 cut(s)	188, 1051
BmgT120I	GGNCC	4 cut(s)	188, 460, 673, 1051
BmrFI	CCNGG	3 cut(s)	114, 599, 1134
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	298, 748
BmtI	GCTAGC	1 cut(s)	770
BmuI	ACTGGG	1 cut(s)	434
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
BpmI	CTGGAG	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	597, 1133
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 598, 856
Bse1I	ACTGG	3 cut(s)	385, 440, 782
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	114, 599, 1134
BseDI	CCNNGG	2 cut(s)	597, 1133
BseGI	GGATG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	153, 598, 856
BseMII	CTCAG	3 cut(s)	524, 852, 990
BseNI	ACTGG	3 cut(s)	385, 440, 782
BseRI	GAGGAG	2 cut(s)	378, 597
BseXI	GCAGC	6 cut(s)	298, 314, 757, 784, 1057, 1065
BshFI	GGCC	3 cut(s)	462, 675, 1098
BsiHKAI	GWGCWC	1 cut(s)	511
BslFI	GGGAC	3 cut(s)	512, 901, 969
BslI	CCNNNNNNNGG	3 cut(s)	153, 598, 856
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	512, 901, 969
BsnI	GGCC	3 cut(s)	462, 675, 1098
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	62, 109, 157, 424, 991
BspACI	CCGC	2 cut(s)	231, 996
BspANI	GGCC	3 cut(s)	462, 675, 1098
BspCNI	CTCAG	3 cut(s)	523, 853, 991
BspMI	ACCTGC	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	770
BspPI	GGATC	3 cut(s)	104, 165, 986
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	3 cut(s)	385, 440, 782
BssECI	CCNNGG	2 cut(s)	597, 1133
BssMI	GATC	5 cut(s)	62, 109, 157, 424, 991
Bst2UI	CCWGG	3 cut(s)	114, 599, 1134
Bst4CI	ACNGT	3 cut(s)	228, 520, 949
Bst6I	CTCTTC	2 cut(s)	163, 810
BstAUI	TGTACA	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	683, 768, 1096
BstDEI	CTNAG	7 cut(s)	152, 182, 510, 677, 861, 999, 1074
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	142
BstKTI	GATC	5 cut(s)	65, 112, 160, 427, 994
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	5 cut(s)	62, 109, 157, 424, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 442, 767
BstNI	CCWGG	3 cut(s)	114, 599, 1134
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	3 cut(s)	112, 597, 1132
BstV1I	GCAGC	6 cut(s)	298, 314, 757, 784, 1057, 1065
BstX2I	RGATCY	1 cut(s)	991
BstXI	CCANNNNNNTGG	1 cut(s)	1061
BstYI	RGATCY	1 cut(s)	991
BsuRI	GGCC	3 cut(s)	462, 675, 1098
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	233, 447
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	683, 768, 1096
Cfr13I	GGNCC	4 cut(s)	188, 460, 673, 1051
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	479, 945
CviAII	CATG	3 cut(s)	422, 682, 712
CviQI	GTAC	2 cut(s)	479, 945
DdeI	CTNAG	7 cut(s)	152, 182, 510, 677, 861, 999, 1074
DpnI	GATC	5 cut(s)	64, 111, 159, 426, 993
DpnII	GATC	5 cut(s)	62, 109, 157, 424, 991
DraI	TTTAAA	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	1096
Eam1104I	CTCTTC	2 cut(s)	163, 810
EarI	CTCTTC	2 cut(s)	163, 810
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	188, 1051
Eco53kI	GAGCTC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	3 cut(s)	112, 597, 1132
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	3 cut(s)	425, 685, 715
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FaqI	GGGAC	3 cut(s)	512, 901, 969
FatI	CATG	3 cut(s)	421, 681, 711
FauI	CCCGC	1 cut(s)	1003
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	6 cut(s)	312, 328, 771, 798, 1046, 1079
FokI	GGATG	1 cut(s)	129
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	6 cut(s)	312, 328, 771, 798, 1046, 1079
FspBI	CTAG	3 cut(s)	201, 767, 932
GluI	GCNGC	6 cut(s)	312, 328, 771, 798, 1046, 1079
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	462, 675, 1098
HgaI	GACGC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	425, 685, 715
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	4 cut(s)	9, 73, 1036, 1150
HphI	GGTGA	4 cut(s)	33, 365, 380, 586
Hpy188I	TCNGA	7 cut(s)	109, 136, 259, 513, 550, 984, 1033
Hpy188III	TCNNGA	2 cut(s)	566, 641
Hpy99I	CGWCG	1 cut(s)	657
HpyAV	CCTTC	9 cut(s)	114, 230, 240, 497, 533, 587, 651, 742, 946
HpyCH4III	ACNGT	3 cut(s)	228, 520, 949
HpyCH4V	TGCA	5 cut(s)	314, 421, 685, 722, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 442, 767
HpyF3I	CTNAG	7 cut(s)	152, 182, 510, 677, 861, 999, 1074
Hsp92II	CATG	3 cut(s)	425, 685, 715
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	62, 109, 157, 424, 991
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	6 cut(s)	298, 314, 757, 784, 1057, 1065
LweI	GCATC	2 cut(s)	298, 748
MaeI	CTAG	3 cut(s)	201, 767, 932
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	5 cut(s)	64, 111, 159, 426, 993
MboI	GATC	5 cut(s)	62, 109, 157, 424, 991
MboII	GAAGA	8 cut(s)	92, 180, 415, 440, 544, 827, 913, 977
MflI	RGATCY	1 cut(s)	991
MhlI	GDGCHC	1 cut(s)	511
MlsI	TGGCCA	1 cut(s)	1098
MluCI	AATT	8 cut(s)	84, 129, 162, 280, 397, 474, 725, 1163
MluNI	TGGCCA	1 cut(s)	1098
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	8 cut(s)	56, 179, 356, 359, 522, 575, 602, 826
Mox20I	TGGCCA	1 cut(s)	1098
MscI	TGGCCA	1 cut(s)	1098
MseI	TTAA	5 cut(s)	15, 267, 744, 866, 1166
MslI	CAYNNNNRTG	1 cut(s)	493
Msp20I	TGGCCA	1 cut(s)	1098
MspA1I	CMGCKG	2 cut(s)	998, 1048
MspR9I	CCNGG	3 cut(s)	114, 599, 1134
MvaI	CCWGG	3 cut(s)	114, 599, 1134
MwoI	GCNNNNNNNGC	3 cut(s)	308, 442, 767
NdeII	GATC	5 cut(s)	62, 109, 157, 424, 991
NheI	GCTAGC	1 cut(s)	766
NlaIII	CATG	3 cut(s)	425, 685, 715
NspI	RCATGY	1 cut(s)	685
PaeI	GCATGC	1 cut(s)	685
PfeI	GAWTC	3 cut(s)	9, 1036, 1150
PflMI	CCANNNNNTGG	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	6 cut(s)	313, 329, 772, 799, 1047, 1080
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	112, 597, 1132
PspGI	CCWGG	3 cut(s)	112, 597, 1132
PspPI	GGNCC	4 cut(s)	188, 460, 673, 1051
PspPPI	RGGWCCY	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	991
PvuII	CAGCTG	1 cut(s)	1048
RsaI	GTAC	2 cut(s)	480, 946
RsaNI	GTAC	2 cut(s)	479, 945
RseI	CAYNNNNRTG	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	5 cut(s)	15, 267, 744, 866, 1166
SatI	GCNGC	6 cut(s)	312, 328, 771, 798, 1046, 1079
Sau3AI	GATC	5 cut(s)	62, 109, 157, 424, 991
Sau96I	GGNCC	4 cut(s)	188, 460, 673, 1051
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	3 cut(s)	114, 599, 1134
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	298, 748
SinI	GGWCC	2 cut(s)	188, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	493
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	8 cut(s)	84, 129, 162, 280, 397, 474, 725, 1163
SsiI	CCGC	2 cut(s)	231, 996
SspMI	CTAG	3 cut(s)	201, 767, 932
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	112, 597, 1132
TaaI	ACNGT	3 cut(s)	228, 520, 949
TaqI	TCGA	2 cut(s)	580, 655
TasI	AATT	8 cut(s)	84, 129, 162, 280, 397, 474, 725, 1163
TatI	WGTACW	1 cut(s)	478
TfiI	GAWTC	3 cut(s)	9, 1036, 1150
Tru1I	TTAA	5 cut(s)	15, 267, 744, 866, 1166
Tru9I	TTAA	5 cut(s)	15, 267, 744, 866, 1166
TscAI	CASTG	2 cut(s)	233, 447
TseI	GCWGC	6 cut(s)	311, 327, 770, 797, 1045, 1078
TspDTI	ATGAA	9 cut(s)	440, 608, 662, 678, 728, 821, 828, 865, 1121
TspRI	CASTG	2 cut(s)	233, 447
Van91I	CCANNNNNTGG	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	188, 1051
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	129, 725
XceI	RCATGY	1 cut(s)	685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1061
XspI	CTAG	3 cut(s)	201, 767, 932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.