Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265987.1

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 380

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 296 bp

atggtgctgccactaacccctatcctagtccagcagttcaaccctctctagtaggaggtgcaatggcttcattcacaggcagtgcccccggatgttatggtggtgctgggtactccagtcatgcagctcctcaggctccaagagcacctgcatttcattttcatcctagtccttacccacctgcatatggaggttcaccatacggaactccgcctcctagacctcaatctggaagttttcctgcaaacacaccttatcctgacgggtatgcccctcctggttctgggtactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

97

Amino Acids

9.66

Weight (kDa)

8.09

Isoelectric Point (pI)

67.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	156, 189
Acc36I	ACCTGC	2 cut(s)	156, 189
AciI	CCGC	1 cut(s)	211
AfaI	GTAC	2 cut(s)	112, 289
AfiI	CCNNNNNNNGG	3 cut(s)	187, 229, 283
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	276
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	7, 124
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	136
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	89
BfaI	CTAG	4 cut(s)	26, 49, 167, 218
BfuAI	ACCTGC	2 cut(s)	156, 189
BisI	GCNGC	2 cut(s)	8, 125
BlsI	GCNGC	2 cut(s)	9, 126
Bme1390I	CCNGG	2 cut(s)	89, 278
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	89, 278
BpmI	CTGGAG	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 229, 283
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	97, 162
BseLI	CCNNNNNNNGG	3 cut(s)	187, 229, 283
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	187, 229, 283
Bsp1286I	GDGCHC	2 cut(s)	87, 147
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	137
BspMI	ACCTGC	2 cut(s)	156, 189
BsrDI	GCAATG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	97, 162
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 142
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	87, 276
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	97, 162
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	2 cut(s)	156, 189
Csp6I	GTAC	2 cut(s)	111, 288
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	3 cut(s)	67, 127, 136
CviKI_1	RGCY	3 cut(s)	67, 127, 136
CviQI	GTAC	2 cut(s)	111, 288
DdeI	CTNAG	1 cut(s)	131
EciI	GGCGGA	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	98, 122, 186, 188, 201, 269
FatI	CATG	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	8, 125
FokI	GGATG	2 cut(s)	104, 149
Fsp4HI	GCNGC	2 cut(s)	8, 125
FspBI	CTAG	4 cut(s)	26, 49, 167, 218
GluI	GCNGC	2 cut(s)	8, 125
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	99
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	1 cut(s)	124
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	230, 259
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	61, 124, 151, 184, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 142
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	132, 141
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	4 cut(s)	26, 49, 167, 218
MhlI	GDGCHC	2 cut(s)	87, 147
MnlI	CCTC	7 cut(s)	49, 54, 140, 184, 224, 233, 284
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	89, 278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	133, 142
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	186
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	137
PaqCI	CACCTGC	2 cut(s)	156, 189
PkrI	GCNGC	2 cut(s)	9, 126
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	137
RsaI	GTAC	2 cut(s)	112, 289
RsaNI	GTAC	2 cut(s)	111, 288
SatI	GCNGC	2 cut(s)	8, 125
ScrFI	CCNGG	2 cut(s)	89, 278
SduI	GDGCHC	2 cut(s)	87, 147
SetI	ASST	7 cut(s)	60, 129, 150, 183, 195, 225, 255
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	4 cut(s)	26, 49, 167, 218
StyD4I	CCNGG	2 cut(s)	87, 276
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	2 cut(s)	7, 124
TspDTI	ATGAA	3 cut(s)	59, 145, 151
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	87
XspI	CTAG	4 cut(s)	26, 49, 167, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.