Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

30251575 .. 30251934

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCCTCAGCGAAACTCGAAGCTTCTCCAAGTGAAGACGAACCGCAGGAGGCCCTGAAGAAGGCCAGGGTCGCCGGCGACGACGTTTCGTCCTGCTCGTCGTCTTCAGAACCCCTAAGCCGGAAGCAGCGCGTAGTGCTCAATCGCGCCGACTGTGCCCTAGATTTTGTAATAGAGGGCAATGAGCGTCGAGGATCTGCACTTTGCGATCAGGGCTTTGCTTATTGCTGGTCCGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

81

Amino Acids

8.55

Weight (kDa)

4.82

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	132, 147
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	77, 90
AfiI	CCNNNNNNNGG	2 cut(s)	61, 120
AhdI	GACNNNNNGTC	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	23, 239
AluI	AGCT	2 cut(s)	23, 239
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	202
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	3 cut(s)	3, 51, 63
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	132, 149
AspS9I	GGNCC	2 cut(s)	52, 231
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	160
BbsI	GAAGAC	2 cut(s)	42, 96
Bbv12I	GWGCWC	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	67
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	231
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	52, 231
BmrFI	CCNGG	1 cut(s)	67
BpiI	GAAGAC	2 cut(s)	42, 96
Bpu10I	CCTNAGC	2 cut(s)	7, 116
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 120
Bse118I	RCCGGY	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	61, 120
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	21
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	183
Bsh1236I	CGCG	2 cut(s)	132, 147
BshFI	GGCC	3 cut(s)	5, 53, 65
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	3 cut(s)	75, 121, 234
BslI	CCNNNNNNNGG	2 cut(s)	61, 120
BsnI	GGCC	3 cut(s)	5, 53, 65
Bsp1286I	GDGCHC	2 cut(s)	141, 160
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	194, 208
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	3 cut(s)	5, 53, 65
BspCNI	CTCAG	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	233
BspFNI	CGCG	2 cut(s)	132, 147
BspPI	GGATC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	194, 208
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	7, 116
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	132, 147
BstHHI	GCGC	2 cut(s)	132, 149
BstKTI	GATC	2 cut(s)	197, 211
BstMBI	GATC	2 cut(s)	194, 208
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 136, 155, 213
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	2 cut(s)	132, 147
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	42, 96
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	3 cut(s)	5, 53, 65
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	2 cut(s)	132, 149
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	52, 231
CseI	GACGC	1 cut(s)	176
CviJI	RGCY	7 cut(s)	5, 23, 53, 65, 120, 216, 239
CviKI_1	RGCY	7 cut(s)	5, 23, 53, 65, 120, 216, 239
DdeI	CTNAG	2 cut(s)	7, 116
DpnI	GATC	2 cut(s)	196, 210
DpnII	GATC	2 cut(s)	194, 208
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1105I	GACNNNNNGTC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	77, 90
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	128
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	131, 148
GluI	GCNGC	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	5, 53, 65
HapII	CCGG	3 cut(s)	75, 121, 234
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	132, 149
Hin6I	GCGC	2 cut(s)	130, 147
HinP1I	GCGC	2 cut(s)	130, 147
HindIII	AAGCTT	1 cut(s)	21
HpaII	CCGG	3 cut(s)	75, 121, 234
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	234
Hpy99I	CGWCG	4 cut(s)	83, 86, 103, 192
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 136, 155, 213
HpyF3I	CTNAG	2 cut(s)	7, 116
HpySE526I	ACGT	1 cut(s)	84
HspAI	GCGC	2 cut(s)	130, 147
Kpn2I	TCCGGA	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	194, 208
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	9 cut(s)	32, 52, 68, 79, 88, 106, 134, 197, 214
Lsp1109I	GCAGC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	84
MalI	GATC	2 cut(s)	196, 210
MboI	GATC	2 cut(s)	194, 208
MboII	GAAGA	3 cut(s)	47, 70, 96
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	141, 160
MnlI	CCTC	4 cut(s)	16, 43, 169, 185
MreI	CGCCGGCG	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	74
MspI	CCGG	3 cut(s)	75, 121, 234
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	2 cut(s)	132, 147
MwoI	GCNNNNNNNGC	4 cut(s)	71, 136, 155, 213
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	2 cut(s)	194, 208
NgoMIV	GCCGGC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 95
PdiI	GCCGGC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	52, 231
PsuI	RGATCY	1 cut(s)	194
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	2 cut(s)	194, 208
Sau96I	GGNCC	2 cut(s)	52, 231
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	141, 160
SetI	ASST	3 cut(s)	25, 87, 241
SgrAI	CRCCGGYG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	231
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	18, 190
TseI	GCWGC	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	59
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.