Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8212078.1

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 676

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8212078.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atggcatcaaccaaacgcgaagctcccactgaagacgaaccagagccctcgaagaagcccaagctccagcagcgcgtggttctcaatcgcgtcgattgcgacctagatttcaacattgaaggcaatgggcttcgaggttcttcgctctacgagcaaggatttgcgtattgctggtccggtgctagagccaatgtgggaattactggcgggaaatactgtttcggctgcaaagtgacgtcgtttcagcctgttgagatggaggacacggcgccggagcagcgaaatctttgccgtgttgggatttccagagggggtgatgtggtgggaggccttggggaaacaaagctgagctttgggtatggtgggacagggaagttttcgaatgcgagtaggttttcggactacggtgagaagtttgggcttggggatgtgattgtttgtgctgtgaatcttgaagagaagccattggcttgcattggtttttcgaagaatgggaagagtttgggtacggcggtgaggttcaatgctggggatttgggtcttggggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

183

Amino Acids

19.5

Weight (kDa)

6.36

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	3 cut(s)	18, 75, 90
AciI	CCGC	2 cut(s)	207, 512
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	2 cut(s)	236, 269
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	4 cut(s)	112, 119, 455, 523
AluBI	AGCT	4 cut(s)	23, 64, 346, 351
AluI	AGCT	4 cut(s)	23, 64, 346, 351
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	3 cut(s)	70, 225, 277
AspLEI	GCGC	2 cut(s)	75, 271
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	326, 419, 526
AsuII	TTCGAA	2 cut(s)	380, 485
AvaII	GGWCC	1 cut(s)	174
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	82, 212, 289
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	3 cut(s)	276, 282, 525
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BfaI	CTAG	2 cut(s)	104, 183
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	3 cut(s)	71, 226, 278
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	3 cut(s)	72, 227, 279
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	2 cut(s)	380, 485
BsaHI	GRCGYC	2 cut(s)	236, 269
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	82, 212, 289
BseYI	CCCAGC	1 cut(s)	527
Bsh1236I	CGCG	3 cut(s)	18, 75, 90
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	177, 272
BslFI	GGGAC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	330
Bsp119I	TTCGAA	2 cut(s)	380, 485
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	207, 512
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	339
BspFNI	CGCG	3 cut(s)	18, 75, 90
BspLI	GGNNCC	1 cut(s)	270
BspT104I	TTCGAA	2 cut(s)	380, 485
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	331
BssNI	GRCGYC	2 cut(s)	236, 269
BssT1I	CCWWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	218, 407
Bst6I	CTCTTC	2 cut(s)	450, 491
BstACI	GRCGYC	2 cut(s)	236, 269
BstBI	TTCGAA	2 cut(s)	380, 485
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	3 cut(s)	18, 75, 90
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	75, 271
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 96, 151, 277
BstUI	CGCG	3 cut(s)	18, 75, 90
BstV1I	GCAGC	3 cut(s)	82, 212, 289
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	2 cut(s)	75, 271
Cfr13I	GGNCC	1 cut(s)	174
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	507
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	1 cut(s)	347
DinI	GGCGCC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	450, 491
EarI	CTCTTC	2 cut(s)	450, 491
Eco130I	CCWWGG	1 cut(s)	331
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	48
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	331
FaiI	YATR	1 cut(s)	360
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	379
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	71, 226, 278
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	71, 226, 278
FspBI	CTAG	2 cut(s)	104, 183
GlaI	GCGC	2 cut(s)	74, 270
GluI	GCNGC	3 cut(s)	71, 226, 278
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	177, 272
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	75, 271
Hin1I	GRCGYC	2 cut(s)	236, 269
Hin6I	GCGC	2 cut(s)	73, 269
HinP1I	GCGC	2 cut(s)	73, 269
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	2 cut(s)	177, 272
HphI	GGTGA	3 cut(s)	326, 419, 526
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	2 cut(s)	306, 452
Hpy99I	CGWCG	2 cut(s)	95, 241
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	218, 407
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	228, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 96, 151, 277
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	2 cut(s)	236, 269
HspAI	GCGC	2 cut(s)	73, 269
KasI	GGCGCC	1 cut(s)	268
LmnI	GCTCC	3 cut(s)	28, 69, 274
Lsp1109I	GCAGC	3 cut(s)	82, 212, 289
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	104, 183
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	6 cut(s)	44, 64, 132, 467, 499, 508
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	58, 128, 253, 302, 320, 510
MspI	CCGG	2 cut(s)	177, 272
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	3 cut(s)	18, 75, 90
MwoI	GCNNNNNNNGC	4 cut(s)	70, 96, 151, 277
NarI	GGCGCC	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	232
NspV	TTCGAA	2 cut(s)	380, 485
PceI	AGGCCT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	72, 227, 279
PluTI	GGCGCC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	174
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SatI	GCNGC	3 cut(s)	71, 226, 278
Sau96I	GGNCC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	9 cut(s)	25, 66, 105, 139, 239, 348, 353, 395, 521
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	270
SfuI	TTCGAA	2 cut(s)	380, 485
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	198
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	2 cut(s)	207, 512
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	104, 183
StuI	AGGCCT	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	218, 407
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	5 cut(s)	50, 93, 133, 380, 485
TasI	AATT	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	448
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	70, 225, 277
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	174
XspI	CTAG	2 cut(s)	104, 183
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.