Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

69056241 .. 69062990

Gene Structure 6750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG490300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCGACAAGCAGAAGCAACGCGTCGTTCTCAATCCCGCCGATTGCGACATAGGTTTCAACGTTGAAGGCAATGGGCTTTTGGGCTCTTCCCTATACGAGAAGGGATTAGCTTATTGCTGGTTCGGTGCTCGAGCCAATGTGGGTATAACGGGTGGGAAGTACTGTTTCGGTTGCAAAGTGGTGTCGTTCCAATCTGTTCAAATGGAGGACACTGACCCTGAAGACCGGAATCTTTGTCGGGTTGGTATTTCTAGAGGGGATGATGTGGTGGGAACCCTAGGGGAAACAAGTCACAGCTTTGGGTATGAGGGCACCGGAAAATTCTGGAATGCTACGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAATCTTGAAGAAAAGCCCTTGGCTTCAATTTCTTTTTCCAAGAATGGAAAGTGTTTGGGTACGCCGATGGATTTCAATGCGGTGGTGGATTCTGAAGTGAAGAATTTTCAATGGGAATCTGCCTTTTTCCCTCATGTTCTGTTGAAAAATGTGGAGGTGGAGTTGCAGTTCAGTGTTGAAGATGGACTTGTTCCTGAAGATGGTTTTAAGCCTTGGGCGGCTGCTCTTGGGGATGGAAATGTGATTGGGGGACCAGTTTTTGATGATCCAAAGGATTGTGAAGTGATGATGATGGTGGGTATGCCCGCTTCAGGCAAAACAACTTGGGCAGAAAAATGGGCGAAAGAGCACCCAGAGAAGCGATATGTTTTGCTTGGGATAAATATGGTTCTGGATCAAATGAAGGTGCCAGGGCACTTGCGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

274

Amino Acids

29.97

Weight (kDa)

5.05

Isoelectric Point (pI)

20.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	78 - 187	2.6e-11	SPRY domain
AAA_33	PF13671	227 - 268	1.7e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	314, 802
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	39, 476, 614, 702
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	2 cut(s)	656, 798
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	323, 499
AcuI	CTGAAG	4 cut(s)	243, 510, 612, 690
AfaI	GTAC	2 cut(s)	164, 457
AfiI	CCNNNNNNNGG	3 cut(s)	353, 596, 707
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	9 cut(s)	61, 68, 203, 404, 423, 472, 506, 541, 575
AjnI	CCWGG	1 cut(s)	805
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	2 cut(s)	113, 300
AluI	AGCT	2 cut(s)	113, 300
Alw21I	GWGCWC	2 cut(s)	133, 747
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	656, 798
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	2 cut(s)	323, 499
AspA2I	CCTAGG	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	647
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	647
AvrII	CCTAGG	1 cut(s)	280
BaeGI	GKGCMC	2 cut(s)	317, 813
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	2 cut(s)	314, 802
BanII	GRGCYC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	133, 747
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	5 cut(s)	457, 572, 590, 623, 682
BciT130I	CCWGG	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	255, 281
BisI	GCNGC	2 cut(s)	615, 618
BlnI	CCTAGG	1 cut(s)	280
BlsI	GCNGC	2 cut(s)	616, 619
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	1 cut(s)	807
Bme18I	GGWCC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	4 cut(s)	277, 316, 648, 804
BmrFI	CCNGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	280, 414, 608, 806
BsaWI	WCCGGW	2 cut(s)	228, 317
BsaXI	ACNNNNNCTCC	6 cut(s)	328, 358, 542, 548, 572, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 596, 707
Bse1I	ACTGG	1 cut(s)	650
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	807
BseDI	CCNNGG	4 cut(s)	280, 414, 608, 806
BseGI	GGATG	2 cut(s)	268, 634
BseLI	CCNNNNNNNGG	3 cut(s)	353, 596, 707
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	2 cut(s)	317, 813
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	314, 802
BsiHKAI	GWGCWC	2 cut(s)	133, 747
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	229, 318
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	3 cut(s)	353, 596, 707
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	5 cut(s)	89, 133, 317, 747, 813
Bsp143I	GATC	2 cut(s)	661, 790
BspACI	CCGC	4 cut(s)	39, 476, 614, 702
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	277, 316, 648, 804
BspPI	GGATC	2 cut(s)	656, 798
BspQI	GCTCTTC	1 cut(s)	94
BspT107I	GGYRCC	2 cut(s)	314, 802
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	4 cut(s)	280, 414, 608, 806
BssMI	GATC	2 cut(s)	661, 790
BssT1I	CCWWGG	3 cut(s)	280, 414, 608
Bst2UI	CCWGG	1 cut(s)	807
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	268, 634
BstFNI	CGCG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	664, 793
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	661, 790
BstNI	CCWGG	1 cut(s)	807
BstSCI	CCNGG	1 cut(s)	805
BstSLI	GKGCMC	2 cut(s)	317, 813
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	268, 634
BtsIMutI	CAGTG	2 cut(s)	213, 574
Cac8I	GCNNGC	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	163, 456
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	2 cut(s)	163, 456
DpnI	GATC	2 cut(s)	663, 792
DpnII	GATC	2 cut(s)	661, 790
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	3 cut(s)	280, 414, 608
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	4 cut(s)	243, 510, 612, 690
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	805
EcoT14I	CCWWGG	3 cut(s)	280, 414, 608
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	3 cut(s)	280, 414, 608
FaeI	CATG	1 cut(s)	533
FaiI	YATR	9 cut(s)	53, 97, 149, 309, 354, 531, 698, 762, 782
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	1 cut(s)	529
FauI	CCCGC	2 cut(s)	46, 709
Fnu4HI	GCNGC	2 cut(s)	615, 618
FokI	GGATG	2 cut(s)	275, 641
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	615, 618
FspBI	CTAG	2 cut(s)	255, 281
GluI	GCNGC	2 cut(s)	615, 618
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	229, 318
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	533
HinfI	GANTC	3 cut(s)	232, 485, 512
HpaII	CCGG	2 cut(s)	229, 318
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	255, 328, 401, 590, 788
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	62, 97, 793
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	177, 392, 562
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	661, 790
LguI	GCTCTTC	1 cut(s)	94
Lsp1109I	GCAGC	1 cut(s)	604
MaeI	CTAG	2 cut(s)	255, 281
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	663, 792
MboI	GATC	2 cut(s)	661, 790
MboII	GAAGA	6 cut(s)	81, 236, 416, 508, 587, 605
MhlI	GDGCHC	5 cut(s)	89, 133, 317, 747, 813
MluCI	AATT	3 cut(s)	323, 423, 499
MluI	ACGCGT	1 cut(s)	22
MnlI	CCTC	6 cut(s)	202, 251, 304, 333, 537, 544
MseI	TTAA	1 cut(s)	603
MspI	CCGG	2 cut(s)	229, 318
MspR9I	CCNGG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	807
MvnI	CGCG	1 cut(s)	24
NdeII	GATC	2 cut(s)	661, 790
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	4 cut(s)	277, 316, 648, 804
NmuCI	GTSAC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	3 cut(s)	232, 485, 512
PkrI	GCNGC	2 cut(s)	616, 619
Psp1406I	AACGTT	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	805
PspN4I	GGNNCC	4 cut(s)	277, 316, 648, 804
PspPI	GGNCC	1 cut(s)	647
PspXI	VCTCGAGB	1 cut(s)	132
RsaI	GTAC	2 cut(s)	164, 457
RsaNI	GTAC	2 cut(s)	163, 456
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	2 cut(s)	615, 618
Sau3AI	GATC	2 cut(s)	661, 790
Sau96I	GGNCC	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	807
SduI	GDGCHC	5 cut(s)	89, 133, 317, 747, 813
SetI	ASST	7 cut(s)	58, 66, 115, 302, 344, 555, 804
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	647
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	323, 423, 499
SsiI	CCGC	4 cut(s)	39, 476, 614, 702
SspMI	CTAG	2 cut(s)	255, 281
StyD4I	CCNGG	1 cut(s)	805
StyI	CCWWGG	3 cut(s)	280, 414, 608
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	133
TasI	AATT	3 cut(s)	323, 423, 499
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	3 cut(s)	232, 485, 512
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	220, 574
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	812
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	220, 574
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	323, 499
XbaI	TCTAGA	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	132
XmaJI	CCTAGG	1 cut(s)	280
XspI	CTAG	2 cut(s)	255, 281
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.