Rh5BG048000

Heterogeneous nuclear ribonucleoprotein U-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003265
Physical Location & Seq
Reverse (-)
3825728 .. 3827737
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG048000.1

Sequence Viewer

Length: 1359 bp
ATGTTTAGTGTTGAAGATGGACTTGTTCCTGAAGAGGGTTTTAAGCCTTGGGAATGTGCTCTTGAGGATGGAAATTCTGTTATGGGACCGTCTGTTTGTGAACCGAAGCATTGTGAAGTGATGATGATGGTGGGTTTGCCTGCCTCGGGCAAAACAACTTGGGCAGAGAAATGGGTGAAAGAGCACCCTGAGAAGCGTTATGTTGTGCTTGGGACGAATGCGGTTCTAGACCAAATGAAGGTGCCAGGGCTCTCGCGGAAGCAGAATTATGGCGAACGATTTGAACGTCTGATGAGTAGAGCCACTGAAATTTTTAATACTCTTTTATCCAGAGCAGCCACCACTCCTCGCAATTACATTCTTGATCAGACAAATGTATACAAGAAGGCTCGTAAACGTAAACTTTTGCCATTCAAACTGTTCAAGAAGATTCCTGTTGTGGTGTTTCCAAGCCCTGAAGAGATGAAGGCTCGTTCTATGAAGAGATTCAGAGAAATGGGAAAGGAGGTACCTGCTGATGCAGTGAATGAAATGTTGGCCAATTATGTTTTACCTGTCAGCAGGGATGTGCCTTGTTCAGATGAGCTTTTTGATGAGGTTATGTTTGTAGAACTCAACAGAGAAGAATCACAGAGACATTTGGATGAGATGAAGCACGAACTTGCACATAAATCTAATTTGAAAACGAATACATCTTCACCATATTCCTGCGGAAACTCAATTCAGTCTTATCCTTGTTCACCAAGTTATGGGGTGAGTCCTGTGCGGCCATGTCCCTCTCCTTCACCACAATATCAAGGAGTTTCAGCAGTCAACACTGGAAATTGGAATAGCTCTTACTCATCTGTTCCTCCACCTTACTATCAGTCGCATATGCCCAACCAAGTGAATTCATATCGGACCCATCAGGGAGCTGTGCCAGTTGGGACTGCAGGACCATATCAAGGCAATCAACCTCCACCTATACCTAGAGCAATTACCCATCAAGGAACTTGTTCTGGCTACTCCAGCAGTTATAATGCCAATCCTACAAGTGGTACAGCCCCTTGCAATAGTTACGGAGCAGGTTATGGTGCTGCCGCTAACCCCTATCCTAGTCCGGCAGTTCAACCCTCTCTAGTAGGAGGTGCAATGGCTTCATTCACAGGCAGTGCCCCCGGATGTTATGGTGGTGCTGGGTACTCCAGTCATGCTGCTCCTCAGGCTCCAAGAGCAACTGCATTTCATCCTAGTCCTTACCCACCTGCATATGGAGGTTCACCATACGGAACTCCGCCTCCTAGACCTCAATCTGGAAGTTTTCCTGCAAACACACCTTATCCTGACGGGTACGCCCCTCCTGGTTCCGGGTACTACTGA

Protein Analysis

452

Amino Acids

49.09

Weight (kDa)

8.63

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_33 PF13671 40 - 185 2.5e-25 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AarI CACCTGC 1 cut(s) 1252
Acc36I ACCTGC 3 cut(s) 520, 1055, 1252
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 2 cut(s) 241, 508
AccB7I CCANNNNNTGG 1 cut(s) 749
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 256
AciI CCGC 6 cut(s) 221, 256, 711, 766, 1080, 1274
AcoI YGGCCR 2 cut(s) 537, 767
AcsI RAATTY 3 cut(s) 73, 309, 889
AcuI CTGAAG 2 cut(s) 51, 477
AfaI GTAC 5 cut(s) 510, 1039, 1181, 1331, 1352
AfiI CCNNNNNNNGG 9 cut(s) 35, 146, 238, 749, 944, 1034, 1250, 1292, 1346
AgsI TTSAA 6 cut(s) 14, 284, 415, 424, 682, 1109
AjnI CCWGG 2 cut(s) 244, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AloI GAACNNNNNNTCC 2 cut(s) 1261, 1293
AluBI AGCT 3 cut(s) 586, 834, 914
AluI AGCT 3 cut(s) 586, 834, 914
Alw21I GWGCWC 2 cut(s) 61, 186
Alw26I GTCTC 1 cut(s) 628
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 2 cut(s) 537, 767
ApeKI GCWGC 3 cut(s) 335, 1076, 1193
ApoI RAATTY 3 cut(s) 73, 309, 889
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 2 cut(s) 485, 994
Asp718I GGTACC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 86, 900, 935
AsuC2I CCSGG 2 cut(s) 1158, 1348
AsuHPI GGTGA 6 cut(s) 187, 690, 732, 766, 777, 1251
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 3 cut(s) 86, 900, 935
AxyI CCTNAGG 1 cut(s) 1200
BaeGI GKGCMC 1 cut(s) 1156
BaeI ACNNNNGTAYC 2 cut(s) 1171, 1204
BalI TGGCCA 1 cut(s) 539
BanI GGYRCC 2 cut(s) 241, 508
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 61, 186
BbvI GCAGC 3 cut(s) 347, 1063, 1180
BccI CCATC 5 cut(s) 11, 62, 121, 912, 990
BciT130I CCWGG 2 cut(s) 246, 1341
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 2 cut(s) 1158, 1348
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 6 cut(s) 227, 969, 1095, 1118, 1230, 1281
BfmI CTRYAG 1 cut(s) 930
BfuAI ACCTGC 3 cut(s) 520, 1055, 1252
BisI GCNGC 5 cut(s) 336, 767, 1077, 1080, 1194
BlsI GCNGC 5 cut(s) 337, 768, 1078, 1081, 1195
Bme1390I CCNGG 4 cut(s) 246, 1158, 1341, 1348
Bme18I GGWCC 3 cut(s) 86, 900, 935
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 3 cut(s) 86, 900, 935
BmiI GGNNCC 6 cut(s) 87, 243, 510, 902, 1206, 1345
BmrFI CCNGG 4 cut(s) 246, 1158, 1341, 1348
BmsI GCATC 1 cut(s) 508
BpmI CTGGAG 2 cut(s) 991, 1168
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 1158, 1348
BsaJI CCNNGG 4 cut(s) 47, 144, 245, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 1261, 1291
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 146, 238, 749, 944, 1034, 1250, 1292, 1346
Bse1I ACTGG 3 cut(s) 823, 920, 1185
Bse21I CCTNAGG 1 cut(s) 1200
Bse3DI GCAATG 1 cut(s) 1137
BseBI CCWGG 2 cut(s) 246, 1341
BseDI CCNNGG 4 cut(s) 47, 144, 245, 1156
BseGI GGATG 5 cut(s) 73, 571, 649, 1166, 1225
BseLI CCNNNNNNNGG 9 cut(s) 35, 146, 238, 749, 944, 1034, 1250, 1292, 1346
BseMI GCAATG 1 cut(s) 1137
BseMII CTCAG 2 cut(s) 180, 1214
BseNI ACTGG 3 cut(s) 823, 920, 1185
BseRI GAGGAG 2 cut(s) 336, 1188
BseSI GKGCMC 1 cut(s) 1156
BseXI GCAGC 3 cut(s) 347, 1063, 1180
BseYI CCCAGC 1 cut(s) 1175
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 539, 769
BshNI GGYRCC 2 cut(s) 241, 508
BsiHKAI GWGCWC 2 cut(s) 61, 186
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 3 cut(s) 1100, 1158, 1347
BslFI GGGAC 4 cut(s) 99, 226, 759, 940
BslI CCNNNNNNNGG 9 cut(s) 35, 146, 238, 749, 944, 1034, 1250, 1292, 1346
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 4 cut(s) 99, 226, 759, 940
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 539, 769
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 4 cut(s) 61, 186, 252, 1156
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 6 cut(s) 221, 256, 711, 766, 1080, 1274
BspANI GGCC 2 cut(s) 539, 769
BspCNI CTCAG 2 cut(s) 181, 1213
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 6 cut(s) 87, 243, 510, 902, 1206, 1345
BspMAI CTGCAG 1 cut(s) 934
BspMI ACCTGC 3 cut(s) 520, 1055, 1252
BspT107I GGYRCC 2 cut(s) 241, 508
BsrDI GCAATG 1 cut(s) 1137
BsrI ACTGG 3 cut(s) 823, 920, 1185
BssECI CCNNGG 4 cut(s) 47, 144, 245, 1156
BssMI GATC 1 cut(s) 364
BssNAI GTATAC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 379
Bst2UI CCWGG 2 cut(s) 246, 1341
Bst4CI ACNGT 2 cut(s) 90, 420
Bst6I CTCTTC 3 cut(s) 27, 453, 476
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 189, 1200
BstF5I GGATG 5 cut(s) 73, 571, 649, 1166, 1225
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 1008, 1202, 1211
BstNI CCWGG 2 cut(s) 246, 1341
BstSCI CCNGG 4 cut(s) 244, 1156, 1339, 1346
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 1156
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 347, 1063, 1180
BstZ17I GTATAC 1 cut(s) 379
Bsu36I CCTNAGG 1 cut(s) 1200
BsuRI GGCC 2 cut(s) 539, 769
BtsCI GGATG 5 cut(s) 73, 571, 649, 1166, 1225
BtsI GCAGTG 2 cut(s) 528, 1156
BtsIMutI CAGTG 4 cut(s) 303, 528, 816, 1156
BveI ACCTGC 3 cut(s) 520, 1055, 1252
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 86, 900, 935
Csp6I GTAC 5 cut(s) 509, 1038, 1180, 1330, 1351
CviAII CATG 2 cut(s) 771, 1190
CviQI GTAC 5 cut(s) 509, 1038, 1180, 1330, 1351
DdeI CTNAG 2 cut(s) 189, 1200
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
EaeI YGGCCR 2 cut(s) 537, 767
Eam1104I CTCTTC 3 cut(s) 27, 453, 476
EarI CTCTTC 3 cut(s) 27, 453, 476
EciI GGCGGA 1 cut(s) 1263
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 3 cut(s) 86, 900, 935
Eco57I CTGAAG 2 cut(s) 51, 477
Eco81I CCTNAGG 1 cut(s) 1200
Eco88I CYCGRG 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 244, 1339
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 2 cut(s) 774, 1193
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 4 cut(s) 99, 226, 759, 940
FatI CATG 2 cut(s) 770, 1189
FauNDI CATATG 2 cut(s) 873, 1249
FbaI TGATCA 1 cut(s) 364
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 5 cut(s) 336, 767, 1077, 1080, 1194
FokI GGATG 5 cut(s) 80, 578, 656, 1173, 1212
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 5 cut(s) 336, 767, 1077, 1080, 1194
FspBI CTAG 6 cut(s) 227, 969, 1095, 1118, 1230, 1281
GluI GCNGC 5 cut(s) 336, 767, 1077, 1080, 1194
GsaI CCCAGC 1 cut(s) 1179
GsuI CTGGAG 2 cut(s) 991, 1168
HaeIII GGCC 2 cut(s) 539, 769
HapII CCGG 3 cut(s) 1100, 1158, 1347
Hin1II CATG 2 cut(s) 774, 1193
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 4 cut(s) 430, 486, 626, 757
HpaII CCGG 3 cut(s) 1100, 1158, 1347
HphI GGTGA 6 cut(s) 187, 690, 732, 766, 777, 1251
Hpy166II GTNNAC 7 cut(s) 101, 379, 395, 401, 740, 814, 1259
Hpy188I TCNGA 5 cut(s) 291, 369, 491, 580, 900
Hpy188III TCNNGA 8 cut(s) 29, 62, 227, 330, 362, 424, 1293, 1322
Hpy8I GTNNAC 7 cut(s) 101, 379, 395, 401, 740, 814, 1259
HpyAV CCTTC 4 cut(s) 232, 379, 460, 792
HpyCH4III ACNGT 2 cut(s) 90, 420
HpyCH4IV ACGT 2 cut(s) 286, 397
HpyCH4V TGCA 8 cut(s) 521, 665, 932, 1050, 1130, 1220, 1247, 1307
HpyF10VI GCNNNNNNNGC 3 cut(s) 1008, 1202, 1211
HpyF3I CTNAG 2 cut(s) 189, 1200
HpySE526I ACGT 2 cut(s) 286, 397
Hsp92II CATG 2 cut(s) 774, 1193
KpnI GGTACC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 4 cut(s) 911, 1061, 1201, 1210
Lsp1109I GCAGC 3 cut(s) 347, 1063, 1180
LweI GCATC 1 cut(s) 508
MaeI CTAG 6 cut(s) 227, 969, 1095, 1118, 1230, 1281
MaeII ACGT 2 cut(s) 286, 397
MaeIII GTNAC 1 cut(s) 1055
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 7 cut(s) 26, 44, 439, 470, 493, 635, 687
MhlI GDGCHC 4 cut(s) 61, 186, 252, 1156
MlsI TGGCCA 1 cut(s) 539
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 766
Mox20I TGGCCA 1 cut(s) 539
MroXI GAANNNNTTC 2 cut(s) 485, 994
MscI TGGCCA 1 cut(s) 539
MseI TTAA 2 cut(s) 42, 315
MslI CAYNNNNRTG 1 cut(s) 642
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 3 cut(s) 1100, 1158, 1347
MspR9I CCNGG 4 cut(s) 246, 1158, 1341, 1348
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 2 cut(s) 246, 1341
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 1008, 1202, 1211
NciI CCSGG 2 cut(s) 1158, 1348
NdeI CATATG 2 cut(s) 873, 1249
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 774, 1193
NlaIV GGNNCC 6 cut(s) 87, 243, 510, 902, 1206, 1345
PaqCI CACCTGC 1 cut(s) 1252
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 2 cut(s) 485, 994
PfeI GAWTC 3 cut(s) 430, 486, 626
PflMI CCANNNNNTGG 1 cut(s) 749
PkrI GCNGC 5 cut(s) 337, 768, 1078, 1081, 1195
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
PsiI TTATAA 1 cut(s) 1017
Psp6I CCWGG 2 cut(s) 244, 1339
PspFI CCCAGC 1 cut(s) 1175
PspGI CCWGG 2 cut(s) 244, 1339
PspN4I GGNNCC 6 cut(s) 87, 243, 510, 902, 1206, 1345
PspPI GGNCC 3 cut(s) 86, 900, 935
PstI CTGCAG 1 cut(s) 934
RsaI GTAC 5 cut(s) 510, 1039, 1181, 1331, 1352
RsaNI GTAC 5 cut(s) 509, 1038, 1180, 1330, 1351
RseI CAYNNNNRTG 1 cut(s) 642
SaqAI TTAA 2 cut(s) 42, 315
SatI GCNGC 5 cut(s) 336, 767, 1077, 1080, 1194
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 3 cut(s) 86, 900, 935
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 4 cut(s) 246, 1158, 1341, 1348
SduI GDGCHC 4 cut(s) 61, 186, 252, 1156
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 930
SinI GGWCC 3 cut(s) 86, 900, 935
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 6 cut(s) 221, 256, 711, 766, 1080, 1274
SspMI CTAG 6 cut(s) 227, 969, 1095, 1118, 1230, 1281
StyD4I CCNGG 4 cut(s) 244, 1156, 1339, 1346
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 90, 420
TaiI ACGT 2 cut(s) 289, 400
TauI GCSGC 2 cut(s) 769, 1082
TfiI GAWTC 3 cut(s) 430, 486, 626
Tru1I TTAA 2 cut(s) 42, 315
Tru9I TTAA 2 cut(s) 42, 315
TscAI CASTG 4 cut(s) 310, 528, 823, 1156
TseI GCWGC 3 cut(s) 335, 1076, 1193
TspDTI ATGAA 8 cut(s) 251, 479, 494, 543, 665, 882, 1128, 1214
TspGWI ACGGA 2 cut(s) 1074, 1281
TspRI CASTG 4 cut(s) 310, 528, 823, 1156
Van91I CCANNNNNTGG 1 cut(s) 749
VpaK11BI GGWCC 3 cut(s) 86, 900, 935
XapI RAATTY 3 cut(s) 73, 309, 889
XbaI TCTAGA 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 378
XmnI GAANNNNTTC 2 cut(s) 485, 994
XspI CTAG 6 cut(s) 227, 969, 1095, 1118, 1230, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.