Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Reverse (-)

2286501 .. 2287043

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAGTCTTGAAGAAAAGCCCTTGGCTTCCATTTCTTTTTCCAAGAATGGAAAGTGTTTGGGTACGGCGATGAAGTTCAATGCAGCCATGGATCCTGAGGTGAAGAATTTTCAATGGGAATTTGCCTTTTTCCCTCACCTTCTGTTGAAAAATGTGCAAGTGGAGTTGCAGTTCAGTGTTGAAAATGAACTTATTCTTGAAGATGGATTTAAGCCTTGGGCGGATGCTCTTGGGGATGGAAATGCGATTGGGAGACCGGATTTTGATGATCCAAAGGATTGTGAAGTGATGATGATGGTGGGTATGCCTCCCTCAGGCAAAACAACTTGGGCAGAGAAATGGGTGAAAGAGCACCCAGAGAAGCGATATGTTTTTGCTGGGATAAACATGGTTTTTGACCAAATGAAGGTTTGTGATCATTGCTTGATGTGCTTTTTTCTGTTCATTATTTCATTCTTGTTGCTTGACAGAAAGCGTGACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

180

Amino Acids

20.57

Weight (kDa)

5.26

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	3 cut(s)	143, 156, 320
AcsI	RAATTY	2 cut(s)	163, 176
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	3 cut(s)	17, 371, 463
AgsI	TTSAA	6 cut(s)	68, 136, 170, 205, 239, 257
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	12, 304
AlwI	GGATC	3 cut(s)	143, 156, 320
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	163, 176
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	32, 169, 185, 412
AxyI	CCTNAGG	2 cut(s)	153, 370
BaeI	ACNNNNGTAYC	2 cut(s)	33, 66
BamHI	GGATCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	3 cut(s)	254, 287, 346
BceAI	ACGGC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	12, 304
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	1 cut(s)	271
BsaI	GGTCTC	2 cut(s)	12, 304
BsaJI	CCNNGG	3 cut(s)	78, 144, 272
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 371, 463
Bse21I	CCTNAGG	2 cut(s)	153, 370
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	3 cut(s)	78, 144, 272
BseGI	GGATG	2 cut(s)	286, 298
BseLI	CCNNNNNNNGG	3 cut(s)	17, 371, 463
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	144, 384
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	17, 371, 463
BsmAI	GTCTC	2 cut(s)	12, 304
Bso31I	GGTCTC	2 cut(s)	12, 304
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	148, 325, 472
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	145, 383
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	3 cut(s)	143, 156, 320
BspTNI	GGTCTC	2 cut(s)	12, 304
BsrDI	GCAATG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	78, 144, 272
BssMI	GATC	3 cut(s)	148, 325, 472
BssT1I	CCWWGG	3 cut(s)	78, 144, 272
BstDEI	CTNAG	2 cut(s)	153, 370
BstDSI	CCRYGG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	286, 298
BstKTI	GATC	3 cut(s)	151, 328, 475
BstMAI	GTCTC	2 cut(s)	12, 304
BstMBI	GATC	3 cut(s)	148, 325, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
Bsu36I	CCTNAGG	2 cut(s)	153, 370
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	2 cut(s)	286, 298
BtsIMutI	CAGTG	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	2 cut(s)	145, 445
CviJI	RGCY	5 cut(s)	34, 76, 83, 143, 271
CviKI_1	RGCY	5 cut(s)	34, 76, 83, 143, 271
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	153, 370
DpnI	GATC	3 cut(s)	150, 327, 474
DpnII	GATC	3 cut(s)	148, 325, 472
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	3 cut(s)	78, 144, 272
Eco31I	GGTCTC	2 cut(s)	12, 304
Eco81I	CCTNAGG	2 cut(s)	153, 370
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoT14I	CCWWGG	3 cut(s)	78, 144, 272
ErhI	CCWWGG	3 cut(s)	78, 144, 272
FaeI	CATG	2 cut(s)	148, 448
FaiI	YATR	5 cut(s)	18, 146, 362, 426, 446
FatI	CATG	2 cut(s)	144, 444
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	293, 305
Fsp4HI	GCNGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	438
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	2 cut(s)	148, 448
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	4 cut(s)	32, 169, 185, 412
Hpy188III	TCNNGA	3 cut(s)	65, 152, 254
HpyAV	CCTTC	2 cut(s)	206, 457
HpyCH4V	TGCA	4 cut(s)	56, 140, 214, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	486
HpyF3I	CTNAG	2 cut(s)	153, 370
Hsp92II	CATG	2 cut(s)	148, 448
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	148, 325, 472
LpnPI	CCDG	5 cut(s)	165, 327, 357, 420, 426
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	150, 327, 474
MboI	GATC	3 cut(s)	148, 325, 472
MboII	GAAGA	3 cut(s)	80, 172, 269
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	2 cut(s)	163, 176
MnlI	CCTC	4 cut(s)	148, 201, 375, 379
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	486
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	148, 325, 472
NlaIII	CATG	2 cut(s)	148, 448
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	148, 325, 472
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	4 cut(s)	8, 159, 198, 468
SfaNI	GCATC	1 cut(s)	271
Sse9I	AATT	2 cut(s)	163, 176
SsiI	CCGC	1 cut(s)	278
StyI	CCWWGG	3 cut(s)	78, 144, 272
TasI	AATT	2 cut(s)	163, 176
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	5 cut(s)	143, 258, 476, 490, 498
TspRI	CASTG	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	163, 176
XmnI	GAANNNNTTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.