Rw7G041090

Heterogeneous nuclear ribonucleoprotein U-like protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
64041483 .. 64045433
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041090.1

Sequence Viewer

Length: 1437 bp
ATGAGCTGCCTTTGTGCTACCTTGCTGAGATTCTTCCTTGCGGATGTAGGTAAAAGCCTCAGTTTCAACATTGAAGGCAATGGGCTTTTGGGCCCTTCCCTATACGAGAAGGGATTAGCTTATTGCTGGTTCGGTGCTCGAGCCAATGTGGGTATATCCAGTGGGAAGTACTGTTTCGGTTGCAAAGTGGTGTCGTTCCAATCTGTTCAAATGGAGGACACTGACCCTGAAGACCGGAATCTTTGTCGGGTTAGTATTTCTAGAGGGGATGATGTGGTGGGAAGCCTTAGGGAAACAAGCCACAGCTTTGCATATGAGGGCACTGGAAAATTCTGGAATGTTATGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAGTCTTGAAGAAAAGCCCTTGGCTTCCATTTCTTTTTCCAAGAATGGAAAGTGTTTGGGTACGGCGATGAAGTTCAATGCAGCCATGGATCCTGAAGTGAAGAATTTTCAATGGGAATTTGCCTTTTTCCCTCACCTTCTGTTGAAAAATGTGGAAGTGGAGTTGCAGTTCAGTGTTGAAGATGAACTTGTTCTTGAAGATGGATTTAAGCCTTGGGCGGCTGCTCTTGGGGATGGAAATGCGATTGGGGGACCGGTTTTTGATGATCCAAAGGATTGTGAAGTGATGATGATGGTGGGTATGCCTGCCTCAGGCAAAACAACTGGGGCAAAGAAATGGGTGAAAGACCACCCAGAGAAACGATATGTTTTCGTTGGTATAAACATGGTTTTTGACCAAATGAAGGTTAAGGAGAATGATGATGACCTATATCATCTCAAACTTCTGCTAATTAAAGCATGTTATATCTTAGATAGTCTTTCATCCAGAGCAACCGTCAGAGCAGCCACCACTCCTCGCAATTACATTCTTGATAGCACATATCTAAAGAAGGGTGAACGTCAGTATGAACTTAGATTCAATCTCTATGGTTATATTTTATTATTTTCTATTTTTCAGATTGCTGTTGTGGTGTTTCCAAGCCCCGAAGAGGTGAAGGCTCGTTTGCTGCAAAGATTTGATGATTTGGGATTTTTGGTACACGCTGAAATAATGAATGAATTGTTGGCCACTTTTGTTTTACTTGTCAGCAAGGATGTGACTTGTTCAGATGAGCTTTTTGATGAGGTTATGTTCGTGGAACTCAACAGAGACGAACCACATAATGTTTTGGAGGAGATGAAGCAGGAAGAATCTGATTTGAACTCAAATGACTCTTCGCCATATTCCTGCAAAAACTTTGACGAGTCTTATCCTTTTTCACCAAATTATGGGGGGAGTCATGTCTTTCCATTTGCCCATTTATCTGTAAGGACCCATCATAGAGCGCTGTGGCAGCGCAATTGGCACATAAATGACTCACTCAAATGTCTGTAA

Protein Analysis

478

Amino Acids

53.98

Weight (kDa)

5.24

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 81 - 160 1.2e-08 SPRY domain
AAA_33 PF13671 229 - 379 1.4e-12 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1331
AciI CCGC 2 cut(s) 41, 620
AclWI GGATC 3 cut(s) 485, 498, 662
AcoI YGGCCR 1 cut(s) 1128
AcsI RAATTY 3 cut(s) 329, 505, 518
AcuI CTGAAG 2 cut(s) 249, 516
AfaI GTAC 3 cut(s) 170, 463, 1101
AfeI AGCGCT 1 cut(s) 1389
AfiI CCNNNNNNNGG 5 cut(s) 359, 713, 805, 1051, 1331
AgeI ACCGGT 1 cut(s) 655
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AloI GAACNNNNNNTCC 2 cut(s) 554, 586
AluBI AGCT 4 cut(s) 6, 119, 306, 1177
AluI AGCT 4 cut(s) 6, 119, 306, 1177
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 354, 1206
AlwI GGATC 3 cut(s) 485, 498, 662
Ama87I CYCGRG 1 cut(s) 138
Aor51HI AGCGCT 1 cut(s) 1389
AoxI GGCC 2 cut(s) 91, 1128
ApaI GGGCCC 1 cut(s) 95
ApeKI GCWGC 6 cut(s) 6, 482, 623, 905, 1069, 1396
ApoI RAATTY 3 cut(s) 329, 505, 518
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 2 cut(s) 1390, 1401
AspS9I GGNCC 4 cut(s) 91, 92, 653, 1374
AsuHPI GGTGA 6 cut(s) 374, 527, 754, 968, 1066, 1314
AvaI CYCGRG 1 cut(s) 138
AvaII GGWCC 2 cut(s) 653, 1374
AxyI CCTNAGG 2 cut(s) 287, 712
BaeGI GKGCMC 2 cut(s) 95, 323
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BalI TGGCCA 1 cut(s) 1130
BamHI GGATCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 5 cut(s) 494, 610, 917, 1056, 1408
BccI CCATC 4 cut(s) 596, 629, 688, 1386
BceAI ACGGC 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 354, 1206
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 1391
BisI GCNGC 7 cut(s) 7, 483, 621, 624, 906, 1070, 1397
BlsI GCNGC 7 cut(s) 8, 484, 622, 625, 907, 1071, 1398
BmcAI AGTACT 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 653, 1374
BmeT110I CYCGRG 1 cut(s) 138
BmgT120I GGNCC 4 cut(s) 91, 92, 653, 1374
BmiI GGNNCC 4 cut(s) 93, 492, 654, 1376
BmrI ACTGGG 1 cut(s) 735
BmuI ACTGGG 1 cut(s) 735
BpiI GAAGAC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 420, 486, 614
BsaWI WCCGGW 2 cut(s) 234, 655
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 713, 805, 1051, 1331
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 3 cut(s) 159, 328, 730
Bse21I CCTNAGG 2 cut(s) 287, 712
Bse3DI GCAATG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 420, 486, 614
BseGI GGATG 5 cut(s) 49, 274, 640, 884, 1162
BseLI CCNNNNNNNGG 5 cut(s) 359, 713, 805, 1051, 1331
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 3 cut(s) 17, 73, 726
BseNI ACTGG 3 cut(s) 159, 328, 730
BseRI GAGGAG 2 cut(s) 906, 1250
BseSI GKGCMC 2 cut(s) 95, 323
BseXI GCAGC 5 cut(s) 494, 610, 917, 1056, 1408
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 2 cut(s) 93, 1130
BshTI ACCGGT 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 2 cut(s) 235, 656
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 5 cut(s) 359, 713, 805, 1051, 1331
BsmAI GTCTC 2 cut(s) 354, 1206
BsmBI CGTCTC 1 cut(s) 1206
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 2 cut(s) 93, 1130
Bso31I GGTCTC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 138
Bsp120I GGGCCC 1 cut(s) 91
Bsp1286I GDGCHC 3 cut(s) 95, 139, 323
Bsp143I GATC 2 cut(s) 490, 667
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 2 cut(s) 41, 620
BspANI GGCC 2 cut(s) 93, 1130
BspCNI CTCAG 3 cut(s) 18, 72, 725
BspLI GGNNCC 4 cut(s) 93, 492, 654, 1376
BspPI GGATC 3 cut(s) 485, 498, 662
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 3 cut(s) 159, 328, 730
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 420, 486, 614
BssMI GATC 2 cut(s) 490, 667
BssT1I CCWWGG 3 cut(s) 420, 486, 614
Bst4CI ACNGT 2 cut(s) 173, 898
Bst6I CTCTTC 2 cut(s) 1044, 1282
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 6 cut(s) 26, 59, 287, 712, 871, 974
BstDSI CCRYGG 1 cut(s) 486
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 5 cut(s) 49, 274, 640, 884, 1162
BstH2I RGCGCY 1 cut(s) 1391
BstHHI GCGC 2 cut(s) 1390, 1401
BstKTI GATC 2 cut(s) 493, 670
BstMAI GTCTC 2 cut(s) 354, 1206
BstMBI GATC 2 cut(s) 490, 667
BstMWI GCNNNNNNNGC 2 cut(s) 1396, 1405
BstNSI RCATGY 1 cut(s) 864
BstSLI GKGCMC 2 cut(s) 95, 323
BstV1I GCAGC 5 cut(s) 494, 610, 917, 1056, 1408
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
Bsu36I CCTNAGG 2 cut(s) 287, 712
BsuRI GGCC 2 cut(s) 93, 1130
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 482
BtsCI GGATG 5 cut(s) 49, 274, 640, 884, 1162
BtsIMutI CAGTG 4 cut(s) 166, 219, 321, 580
Cac8I GCNNGC 1 cut(s) 708
CfoI GCGC 2 cut(s) 1390, 1401
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 4 cut(s) 91, 92, 653, 1374
Csp6I GTAC 3 cut(s) 169, 462, 1100
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 4 cut(s) 487, 787, 861, 1343
CviQI GTAC 3 cut(s) 169, 462, 1100
DdeI CTNAG 6 cut(s) 26, 59, 287, 712, 871, 974
DpnI GATC 2 cut(s) 492, 669
DpnII GATC 2 cut(s) 490, 667
EaeI YGGCCR 1 cut(s) 1128
Eam1104I CTCTTC 2 cut(s) 1044, 1282
EarI CTCTTC 2 cut(s) 1044, 1282
Eco130I CCWWGG 3 cut(s) 420, 486, 614
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 653, 1374
Eco47III AGCGCT 1 cut(s) 1389
Eco57I CTGAAG 2 cut(s) 249, 516
Eco81I CCTNAGG 2 cut(s) 287, 712
Eco88I CYCGRG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoO109I RGGNCCY 2 cut(s) 92, 1374
EcoT14I CCWWGG 3 cut(s) 420, 486, 614
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 3 cut(s) 420, 486, 614
Esp3I CGTCTC 1 cut(s) 1206
FaeI CATG 4 cut(s) 490, 790, 864, 1346
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 666
FatI CATG 4 cut(s) 486, 786, 860, 1342
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 7 cut(s) 7, 483, 621, 624, 906, 1070, 1397
FokI GGATG 5 cut(s) 56, 281, 647, 871, 1169
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 7 cut(s) 7, 483, 621, 624, 906, 1070, 1397
FspBI CTAG 1 cut(s) 261
GlaI GCGC 2 cut(s) 1389, 1400
GluI GCNGC 7 cut(s) 7, 483, 621, 624, 906, 1070, 1397
HaeII RGCGCY 1 cut(s) 1391
HaeIII GGCC 2 cut(s) 93, 1130
HapII CCGG 2 cut(s) 235, 656
HhaI GCGC 2 cut(s) 1390, 1401
Hin1II CATG 4 cut(s) 490, 790, 864, 1346
Hin6I GCGC 2 cut(s) 1388, 1399
HinP1I GCGC 2 cut(s) 1388, 1399
HinfI GANTC 8 cut(s) 30, 238, 978, 1253, 1274, 1307, 1339, 1418
HpaII CCGG 2 cut(s) 235, 656
HphI GGTGA 6 cut(s) 374, 527, 754, 968, 1066, 1314
Hpy166II GTNNAC 2 cut(s) 959, 1102
Hpy188I TCNGA 4 cut(s) 902, 1020, 1171, 1258
Hpy188III TCNNGA 7 cut(s) 261, 334, 407, 494, 596, 888, 932
Hpy8I GTNNAC 2 cut(s) 959, 1102
HpyAV CCTTC 7 cut(s) 68, 103, 105, 548, 799, 946, 1051
HpyCH4III ACNGT 2 cut(s) 173, 898
HpyCH4IV ACGT 1 cut(s) 961
HpyCH4V TGCA 7 cut(s) 183, 311, 398, 482, 568, 1072, 1293
HpyF10VI GCNNNNNNNGC 2 cut(s) 1396, 1405
HpyF3I CTNAG 6 cut(s) 26, 59, 287, 712, 871, 974
HpySE526I ACGT 1 cut(s) 961
Hsp92II CATG 4 cut(s) 490, 790, 864, 1346
HspAI GCGC 2 cut(s) 1388, 1399
Kzo9I GATC 2 cut(s) 490, 667
Lsp1109I GCAGC 5 cut(s) 494, 610, 917, 1056, 1408
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 961
MaeIII GTNAC 1 cut(s) 1159
MalI GATC 2 cut(s) 492, 669
MboI GATC 2 cut(s) 490, 667
MboII GAAGA 9 cut(s) 25, 242, 422, 514, 593, 611, 1061, 1262, 1269
MfeI CAATTG 1 cut(s) 1402
MflI RGATCY 1 cut(s) 490
MhlI GDGCHC 3 cut(s) 95, 139, 323
MlsI TGGCCA 1 cut(s) 1130
MluCI AATT 8 cut(s) 329, 505, 518, 852, 922, 1121, 1327, 1402
MluNI TGGCCA 1 cut(s) 1130
MlyI GAGTC 4 cut(s) 1268, 1316, 1348, 1412
Mox20I TGGCCA 1 cut(s) 1130
MroXI GAANNNNTTC 1 cut(s) 591
MscI TGGCCA 1 cut(s) 1130
MseI TTAA 3 cut(s) 609, 810, 855
MslI CAYNNNNRTG 2 cut(s) 1413, 1426
Msp20I TGGCCA 1 cut(s) 1130
MspI CCGG 2 cut(s) 235, 656
MunI CAATTG 1 cut(s) 1402
MwoI GCNNNNNNNGC 2 cut(s) 1396, 1405
NcoI CCATGG 1 cut(s) 486
NdeI CATATG 1 cut(s) 313
NdeII GATC 2 cut(s) 490, 667
NlaIII CATG 4 cut(s) 490, 790, 864, 1346
NlaIV GGNNCC 4 cut(s) 93, 492, 654, 1376
NmuCI GTSAC 1 cut(s) 1159
NspI RCATGY 1 cut(s) 864
PaeR7I CTCGAG 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 4 cut(s) 30, 238, 978, 1253
PflMI CCANNNNNTGG 1 cut(s) 1331
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 7 cut(s) 8, 484, 622, 625, 907, 1071, 1398
PleI GAGTC 4 cut(s) 1268, 1315, 1347, 1412
PpsI GAGTC 4 cut(s) 1268, 1315, 1347, 1412
PpuMI RGGWCCY 1 cut(s) 1374
Psp5II RGGWCCY 1 cut(s) 1374
PspN4I GGNNCC 4 cut(s) 93, 492, 654, 1376
PspOMI GGGCCC 1 cut(s) 91
PspPI GGNCC 4 cut(s) 91, 92, 653, 1374
PspPPI RGGWCCY 1 cut(s) 1374
PspXI VCTCGAGB 1 cut(s) 138
PsuI RGATCY 1 cut(s) 490
RsaI GTAC 3 cut(s) 170, 463, 1101
RsaNI GTAC 3 cut(s) 169, 462, 1100
RseI CAYNNNNRTG 2 cut(s) 1413, 1426
SaqAI TTAA 3 cut(s) 609, 810, 855
SatI GCNGC 7 cut(s) 7, 483, 621, 624, 906, 1070, 1397
Sau3AI GATC 2 cut(s) 490, 667
Sau96I GGNCC 4 cut(s) 91, 92, 653, 1374
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 4 cut(s) 1268, 1316, 1348, 1412
SduI GDGCHC 3 cut(s) 95, 139, 323
Sfr274I CTCGAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 653, 1374
SlaI CTCGAG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 1413, 1426
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 8 cut(s) 329, 505, 518, 852, 922, 1121, 1327, 1402
SsiI CCGC 2 cut(s) 41, 620
SspMI CTAG 1 cut(s) 261
StyI CCWWGG 3 cut(s) 420, 486, 614
TaaI ACNGT 2 cut(s) 173, 898
TaiI ACGT 1 cut(s) 964
TaqI TCGA 1 cut(s) 139
TasI AATT 8 cut(s) 329, 505, 518, 852, 922, 1121, 1327, 1402
TatI WGTACW 1 cut(s) 168
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 4 cut(s) 30, 238, 978, 1253
Tru1I TTAA 3 cut(s) 609, 810, 855
Tru9I TTAA 3 cut(s) 609, 810, 855
TscAI CASTG 4 cut(s) 166, 226, 328, 580
TseFI GTSAC 1 cut(s) 1159
TseI GCWGC 6 cut(s) 6, 482, 623, 905, 1069, 1396
Tsp45I GTSAC 1 cut(s) 1159
TspDTI ATGAA 8 cut(s) 485, 600, 818, 873, 984, 1130, 1134, 1256
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 4 cut(s) 166, 226, 328, 580
Van91I CCANNNNNTGG 1 cut(s) 1331
VpaK11BI GGWCC 2 cut(s) 653, 1374
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 3 cut(s) 329, 505, 518
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 864
XhoI CTCGAG 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.