Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003265

Physical Location & Seq

Genomic Coordinates Forward (+)

54879110 .. 54882966

Gene Structure 3857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG463200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGAAGAGCAGCTCAAGAATTGGGTTCTCTGGAATTAGAAGCCCCCACCTTGCACCAGATTTCACAATTCTCTTGCACACAGTTCTCTCGCACCTTTTGAGGATCAGTCATTATAGTCTCTCGTTTCTGACATCCAATGGCCGACGAGAGAAGCAACGCGTCGTTCTCAATCCCGCCGATTGCGACATAGGTTTCAACATTGAAGGCAATGGGCTTTTGGGCTCTTCCCTGTACGAGAAGGGATTAGCTTATTGCTGGTTCGGTGCTCGAGCCAATGTGGGTATAACGGGTGGGAAGTACTGTTTCGGTTGCAAAGTGGTGTCGTTCCAATCTGTTCAAATGGAGGACACTGACCCTGAAGACCGGAATCTTTGCCGGGTTGGTATTTCTAGAGGGGATGATGCGGTGGGAAGCCTAGGGGAAACAAGTCACAGCTTTGGGTATGAGGGAACTGGAAAATTCTGGAATGCTACGAGGTCTCCGTGCTATGGTGAGAAGTTTGGGCTTGGAGATACTATTGTTTGTGCAGTCAATCTTGAAGAAAAGCCCTTGGCTTCCATTTCTTTTTCAAAGAATGGAGAGTGTTTGGGTACGGCGATGAAGTTCAATGCGGCCGTGGATCCTGAAGTGAAGAATTTTCAATGGGAATCTGCCTTTTTCCCTCACCTTCTGTTGAAAAATGTGGAAGTGGAGTTGCAGTTCAGTGTTGAAGATGGACTTGTTCTTGAAGATGGATTTAAGCCTTGGGCGGCTGCTCTTGGGGATGGAAATGCGATTGGGGGACCGGTTTTTGATGATCCAAAGGATTGTGAAGTGATGATGATGGTGGGTATGCCTGCCTCAGGCAAAACAACTTGGGCAGAGAAATGGGTGAAAGACCACCCAGAGAAGCGATATGTTTTCGTTGGTATAAACATGGTTTTTGACCAAATGAAGGTGCCAGGGCACTTGCGTAAGCAGGTTAAGGAGAGTGATGATGACCCATATCGTCTCGAACTTCTGCTAATTAAAGCATGTTATATCTTAGATAGTCTTTCATCCAGAGCAACCGTCAGAGCAGCCACCACTCCTCGCAATTACATTCTTGATAGCACATATCTAAAGAAGGGTGAACATTGCTGTTGTGGTGTGTTTCCAAGCCCCGAAGAGGTGAAGGCTCGTTTGCTGCAAAGATTTGATGATTTGGGATTTTTGGTACACGCTGAAATAATGAATGAATTGTTGGGCAATTTTGTTTTACCTGTCAGCAAGGATGTGCCTTGTTCAGATGAGCTTTTTGATGAGGTTATGTTCGTGGAACTCAACAGAGACGAATCACATAAACTTTTGGAGGAGATGAAGCAGGAAGAATCTGATTTGAACTCAAATGACTCTTCGCCGTATTCCTGCAAAAACTTTGACGAGTCTTATCCTTTTTCACCAAATTATGGGGAGAGAGAGGAGAACTTGAATGTGAATGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0019899 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko05164 map05164

Pfam Domains

Protein Families

AAA_33 SPRY

Protein Analysis

488

Amino Acids

54.37

Weight (kDa)

5.08

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	122 - 203	7.3e-11	SPRY domain
AAA_33	PF13671	272 - 371	4e-10	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_3g03980 FvH4_6g02023
malus_domestica	MD05G1325500.v1.1
prunus_persica	Prupe.4G036900_v2.0.a1
pyrus_communis	pycom05g29950 pycom10g25600
rosa_chinensis	RchiOBHm_Chr5g0006311 RchiOBHm_Chr7g0240451
rosa_laevigata	RLG00000031365
rosa_multiflora	Rmu_co8212078.1_g000001 Rmu_co8265987.1_g000001 Rmu_sc0003884.1_g000002 Rmu_sc0005327.1_g000018
rosa_roxburghii	Rroxscaffold_1G00069680 Rroxscaffold_3G00220000 Rroxscaffold_3G00220020 Rroxscaffold_3G00220060
rosa_rugosa	Rorug04G0421000 Rorug07G0335900 Rorug07G0336000 Rorug07G0336100 Rorug07G0336200
rosa_samantha	Rh5AG048900 Rh5BG048000 Rh5BG048100 Rh5CG056300 Rh5DG047200 Rh7AG490300 Rh7AG490400 Rh7BG463200 Rh7CG506700 Rh7DG474300
rosa_wichuraiana	Rw5G004870 Rw7G041090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	949
AccB1I	GGYRCC	1 cut(s)	937
AccB7I	CCANNNNNTGG	1 cut(s)	1427
AccII	CGCG	1 cut(s)	159
AciI	CCGC	4 cut(s)	174, 404, 611, 749
AclWI	GGATC	4 cut(s)	110, 614, 627, 791
AcoI	YGGCCR	2 cut(s)	139, 612
AcsI	RAATTY	2 cut(s)	458, 634
AcuI	CTGAAG	2 cut(s)	378, 645
AfaI	GTAC	4 cut(s)	233, 299, 592, 1197
AfiI	CCNNNNNNNGG	5 cut(s)	488, 842, 934, 1147, 1427
AflIII	ACRYGT	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	784
AjnI	CCWGG	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	2 cut(s)	1205, 1237
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	4 cut(s)	12, 248, 435, 1273
AluI	AGCT	4 cut(s)	12, 248, 435, 1273
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	4 cut(s)	122, 483, 995, 1302
AlwI	GGATC	4 cut(s)	110, 614, 627, 791
Ama87I	CYCGRG	1 cut(s)	267
AoxI	GGCC	2 cut(s)	139, 612
ApeKI	GCWGC	4 cut(s)	9, 752, 1058, 1165
ApoI	RAATTY	2 cut(s)	458, 634
AsiGI	ACCGGT	1 cut(s)	784
AspA2I	CCTAGG	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	6 cut(s)	503, 656, 883, 1121, 1162, 1410
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	782
AvrII	CCTAGG	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	841
BaeGI	GKGCMC	1 cut(s)	948
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	4 cut(s)	21, 739, 1070, 1152
BccI	CCATC	4 cut(s)	707, 725, 758, 817
BceAI	ACGGC	3 cut(s)	599, 609, 1363
BciT130I	CCWGG	1 cut(s)	942
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	4 cut(s)	122, 483, 995, 1302
BfaI	CTAG	2 cut(s)	390, 416
BfuAI	ACCTGC	1 cut(s)	949
BisI	GCNGC	6 cut(s)	10, 612, 750, 753, 1059, 1166
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	6 cut(s)	11, 613, 751, 754, 1060, 1167
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	377, 942
Bme18I	GGWCC	1 cut(s)	782
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	3 cut(s)	621, 783, 939
BmrFI	CCNGG	2 cut(s)	377, 942
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	483
BsaJI	CCNNGG	5 cut(s)	415, 549, 615, 743, 941
BsaWI	WCCGGW	2 cut(s)	363, 784
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 683, 713
Bsc4I	CCNNNNNNNGG	5 cut(s)	488, 842, 934, 1147, 1427
Bse118I	RCCGGY	1 cut(s)	784
Bse1I	ACTGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	841
Bse3DI	GCAATG	2 cut(s)	214, 1114
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	5 cut(s)	415, 549, 615, 743, 941
BseGI	GGATG	5 cut(s)	131, 403, 769, 1037, 1258
BseLI	CCNNNNNNNGG	5 cut(s)	488, 842, 934, 1147, 1427
BseMI	GCAATG	2 cut(s)	214, 1114
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	3 cut(s)	1059, 1346, 1454
BseSI	GKGCMC	1 cut(s)	948
BseX3I	CGGCCG	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	21, 739, 1070, 1152
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	615
BshFI	GGCC	2 cut(s)	141, 614
BshNI	GGYRCC	1 cut(s)	937
BshTI	ACCGGT	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	364, 376, 785
BslFI	GGGAC	1 cut(s)	795
BslI	CCNNNNNNNGG	5 cut(s)	488, 842, 934, 1147, 1427
BsmAI	GTCTC	4 cut(s)	122, 483, 995, 1302
BsmBI	CGTCTC	2 cut(s)	995, 1302
BsmFI	GGGAC	1 cut(s)	795
BsmI	GAATGC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	141, 614
Bso31I	GGTCTC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	267
Bsp1286I	GDGCHC	3 cut(s)	224, 268, 948
Bsp143I	GATC	3 cut(s)	102, 619, 796
BspACI	CCGC	4 cut(s)	174, 404, 611, 749
BspANI	GGCC	2 cut(s)	141, 614
BspCNI	CTCAG	1 cut(s)	854
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	621, 783, 939
BspMI	ACCTGC	1 cut(s)	949
BspPI	GGATC	4 cut(s)	110, 614, 627, 791
BspQI	GCTCTTC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	937
BspTNI	GGTCTC	1 cut(s)	483
BsrDI	GCAATG	2 cut(s)	214, 1114
BsrFI	RCCGGY	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	784
BssECI	CCNNGG	5 cut(s)	415, 549, 615, 743, 941
BssMI	GATC	3 cut(s)	102, 619, 796
BssT1I	CCWWGG	3 cut(s)	415, 549, 743
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	3 cut(s)	82, 302, 1051
Bst6I	CTCTTC	3 cut(s)	229, 1140, 1378
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	2 cut(s)	841, 1024
BstDSI	CCRYGG	1 cut(s)	615
BstENI	CCTNNNNNAGG	1 cut(s)	840
BstF5I	GGATG	5 cut(s)	131, 403, 769, 1037, 1258
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	105, 622, 799
BstMAI	GTCTC	4 cut(s)	122, 483, 995, 1302
BstMBI	GATC	3 cut(s)	102, 619, 796
BstMCI	CGRYCG	1 cut(s)	615
BstNI	CCWGG	1 cut(s)	942
BstNSI	RCATGY	1 cut(s)	1017
BstSCI	CCNGG	2 cut(s)	375, 940
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	21, 739, 1070, 1152
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BstZI	CGGCCG	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	841
BsuRI	GGCC	2 cut(s)	141, 614
BtgI	CCRYGG	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	611
BtsCI	GGATG	5 cut(s)	131, 403, 769, 1037, 1258
BtsIMutI	CAGTG	2 cut(s)	348, 709
BveI	ACCTGC	1 cut(s)	949
Cac8I	GCNNGC	1 cut(s)	837
Cfr10I	RCCGGY	1 cut(s)	784
Cfr13I	GGNCC	1 cut(s)	782
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	4 cut(s)	232, 298, 591, 1196
CspAI	ACCGGT	1 cut(s)	784
CviAII	CATG	2 cut(s)	916, 1014
CviQI	GTAC	4 cut(s)	232, 298, 591, 1196
DdeI	CTNAG	2 cut(s)	841, 1024
DpnI	GATC	3 cut(s)	104, 621, 798
DpnII	GATC	3 cut(s)	102, 619, 796
EaeI	YGGCCR	2 cut(s)	139, 612
EagI	CGGCCG	1 cut(s)	612
Eam1104I	CTCTTC	3 cut(s)	229, 1140, 1378
EarI	CTCTTC	3 cut(s)	229, 1140, 1378
EclXI	CGGCCG	1 cut(s)	612
Eco130I	CCWWGG	3 cut(s)	415, 549, 743
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	782
Eco52I	CGGCCG	1 cut(s)	612
Eco57I	CTGAAG	2 cut(s)	378, 645
Eco81I	CCTNAGG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	840
EcoRII	CCWGG	1 cut(s)	940
EcoT14I	CCWWGG	3 cut(s)	415, 549, 743
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	3 cut(s)	415, 549, 743
Esp3I	CGTCTC	2 cut(s)	995, 1302
FaeI	CATG	2 cut(s)	919, 1017
FalI	AAGNNNNNCTT	2 cut(s)	702, 734
FaqI	GGGAC	1 cut(s)	795
FatI	CATG	2 cut(s)	915, 1013
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	6 cut(s)	10, 612, 750, 753, 1059, 1166
FokI	GGATG	5 cut(s)	118, 410, 776, 1024, 1265
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	6 cut(s)	10, 612, 750, 753, 1059, 1166
FspBI	CTAG	2 cut(s)	390, 416
GluI	GCNGC	6 cut(s)	10, 612, 750, 753, 1059, 1166
HaeIII	GGCC	2 cut(s)	141, 614
HapII	CCGG	3 cut(s)	364, 376, 785
HgaI	GACGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	919, 1017
HinfI	GANTC	6 cut(s)	367, 647, 1313, 1349, 1370, 1403
HpaII	CCGG	3 cut(s)	364, 376, 785
HphI	GGTGA	6 cut(s)	503, 656, 883, 1121, 1162, 1410
Hpy166II	GTNNAC	2 cut(s)	1112, 1198
Hpy188I	TCNGA	4 cut(s)	129, 1055, 1267, 1354
Hpy8I	GTNNAC	2 cut(s)	1112, 1198
Hpy99I	CGWCG	2 cut(s)	147, 164
HpyAV	CCTTC	6 cut(s)	197, 232, 677, 928, 1099, 1147
HpyCH4III	ACNGT	3 cut(s)	82, 302, 1051
HpyCH4V	TGCA	7 cut(s)	53, 76, 312, 527, 697, 1168, 1389
HpyF3I	CTNAG	2 cut(s)	841, 1024
Hsp92II	CATG	2 cut(s)	919, 1017
Kzo9I	GATC	3 cut(s)	102, 619, 796
LguI	GCTCTTC	1 cut(s)	229
Lsp1109I	GCAGC	4 cut(s)	21, 739, 1070, 1152
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	390, 416
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	104, 621, 798
MboI	GATC	3 cut(s)	102, 619, 796
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	3 cut(s)	224, 268, 948
MluI	ACGCGT	1 cut(s)	157
MlyI	GAGTC	2 cut(s)	1364, 1412
MseI	TTAA	3 cut(s)	738, 963, 1008
MspI	CCGG	3 cut(s)	364, 376, 785
MspR9I	CCNGG	2 cut(s)	377, 942
Mva1269I	GAATGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	942
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	102, 619, 796
NlaIII	CATG	2 cut(s)	919, 1017
NlaIV	GGNNCC	3 cut(s)	621, 783, 939
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	1017
PaeR7I	CTCGAG	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	479
PctI	GAATGC	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	367, 647, 1313, 1349
PflMI	CCANNNNNTGG	1 cut(s)	1427
PinAI	ACCGGT	1 cut(s)	784
PkrI	GCNGC	6 cut(s)	11, 613, 751, 754, 1060, 1167
PleI	GAGTC	2 cut(s)	1364, 1411
PpsI	GAGTC	2 cut(s)	1364, 1411
Psp6I	CCWGG	1 cut(s)	940
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	3 cut(s)	621, 783, 939
PspPI	GGNCC	1 cut(s)	782
PspXI	VCTCGAGB	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	4 cut(s)	233, 299, 592, 1197
RsaNI	GTAC	4 cut(s)	232, 298, 591, 1196
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	738, 963, 1008
SatI	GCNGC	6 cut(s)	10, 612, 750, 753, 1059, 1166
Sau3AI	GATC	3 cut(s)	102, 619, 796
Sau96I	GGNCC	1 cut(s)	782
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	2 cut(s)	1364, 1412
ScrFI	CCNGG	2 cut(s)	377, 942
SduI	GDGCHC	3 cut(s)	224, 268, 948
SfaNI	GCATC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	782
SlaI	CTCGAG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	13, 267
SmoI	CTYRAG	2 cut(s)	13, 267
SsiI	CCGC	4 cut(s)	174, 404, 611, 749
SspMI	CTAG	2 cut(s)	390, 416
StyD4I	CCNGG	2 cut(s)	375, 940
StyI	CCWWGG	3 cut(s)	415, 549, 743
TaaI	ACNGT	3 cut(s)	82, 302, 1051
TaqI	TCGA	2 cut(s)	268, 993
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	614, 752
TfiI	GAWTC	4 cut(s)	367, 647, 1313, 1349
Tru1I	TTAA	3 cut(s)	738, 963, 1008
Tru9I	TTAA	3 cut(s)	738, 963, 1008
TscAI	CASTG	2 cut(s)	355, 709
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	4 cut(s)	9, 752, 1058, 1165
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	7 cut(s)	17, 614, 947, 1026, 1226, 1230, 1352
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	355, 709
Van91I	CCANNNNNTGG	1 cut(s)	1427
VpaK11BI	GGWCC	1 cut(s)	782
XagI	CCTNNNNNAGG	1 cut(s)	840
XapI	RAATTY	2 cut(s)	458, 634
XbaI	TCTAGA	1 cut(s)	389
XceI	RCATGY	1 cut(s)	1017
XhoI	CTCGAG	1 cut(s)	267
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	390, 416
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.