Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

1577955 .. 1580794

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAACAAATTTTGTTCAGGATCCCTCCGCATATCCAGGGCAGTGAGTAGCTTGGTACAGGTCAATTTCTCAAGTGATTATATACTGAGGGAGCAGTGTAAGGATCCTTGGAATGAGGTCAGAATTGGGAAGCTGCTTGAAGACCTTGATGCTTTAGCTGGTACCATCTCTGTCAAGCACTGCTATGCTGTTGATACCACAACAAGGCCACTCTTACTGGTCACTGCATCTGTTGACAAAATTGTCCTGAAGAAGCCAATTAGTGTTGACATTGACCTGAAAATTGTTGGTGCTGTCATTTGGGTGGGGCGGTCATCTATTGAGATCCAACTAGAAGTTACTCAATCCACAAAAGCCAACTTCATATTTGTGGCTCATGACTCTAAGACTGGGAAGGCTGCTCCAGTTAACAGGCTCTTACCAGAAACTGAAAGAGAACAATTTCTTTTCAAGGAAGCAGAAGCCAGAAATAATCTGAGGAAAAGAACGAGAGGAGGACAAAAAAGAGAGTTTGAGAATGGAGAAGTACATAGACTTGAAAGCCTGTTGGCTGAGGGAAGGATATTCTGTGATATGCCTGCCTTGGCAGACGGAGATAGCATTCTTCTGAGGGACACTAGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATACATGGTCGGATCTTTGGAGGATTTTTAATGCACCGAGCATTTGAATTGGCTTTTTCCACAGCTTATGCCTTTGCTGGCCTGGTTCCTTGCTTTCTAGAAGTCGATCTTGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGTTTCAAATCTTGTGTTCTCTACACAGAAGTTAATCCAGATCAGCCTCTGATCACGATTGAAGTTGTTGCTCATGTTACCAGGCCTGAGCTCAGGTCCGGTGAGGTATCGAATACATTTTATTTTACTTTCACCGTACGTCCCGAGGCAAAGGCCACAAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAAACAGAAGAGAAGAGGAAGCACGACGTATACTGGAGCGCAGGGATGCTCAGGCCTTGCTTTCATCAACACTTGTGACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

363

Amino Acids

40.81

Weight (kDa)

8.63

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	1033
AciI	CCGC	2 cut(s)	28, 310
AclWI	GGATC	6 cut(s)	15, 28, 98, 111, 319, 680
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	4 cut(s)	57, 163, 528, 948
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	140, 451, 539, 707, 817, 872
AjnI	CCWGG	3 cut(s)	35, 741, 890
AluBI	AGCT	6 cut(s)	51, 133, 158, 621, 725, 901
AluI	AGCT	6 cut(s)	51, 133, 158, 621, 725, 901
Alw21I	GWGCWC	1 cut(s)	903
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	6 cut(s)	15, 28, 98, 111, 319, 680
AlwNI	CAGNNNCTG	2 cut(s)	428, 859
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	5 cut(s)	206, 739, 893, 963, 1056
ApeKI	GCWGC	2 cut(s)	133, 398
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	441
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	1044
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	2 cut(s)	923, 934
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	1 cut(s)	906
BamHI	GGATCC	2 cut(s)	20, 103
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	903
BbvCI	CCTCAGC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	120, 385
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	3 cut(s)	37, 743, 892
BciVI	GTATCC	1 cut(s)	978
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	3 cut(s)	332, 618, 758
BfuI	GTATCC	1 cut(s)	978
BisI	GCNGC	2 cut(s)	134, 399
BlsI	GCNGC	2 cut(s)	135, 400
Bme1390I	CCNGG	3 cut(s)	37, 743, 892
Bme18I	GGWCC	1 cut(s)	906
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	5 cut(s)	22, 105, 163, 747, 999
BmrFI	CCNGG	3 cut(s)	37, 743, 892
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	3 cut(s)	139, 236, 1039
BmuI	ACTGGG	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	387, 1058
Bpu10I	CCTNAGC	4 cut(s)	552, 897, 902, 1053
BpuEI	CTTGAG	2 cut(s)	55, 802
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	4 cut(s)	36, 107, 582, 954
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	4 cut(s)	222, 394, 404, 1041
BseBI	CCWGG	3 cut(s)	37, 743, 892
BseDI	CCNNGG	4 cut(s)	36, 107, 582, 954
BseGI	GGATG	2 cut(s)	799, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	7 cut(s)	77, 467, 543, 599, 888, 916, 1067
BseNI	ACTGG	4 cut(s)	222, 394, 404, 1041
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	120, 385
BshFI	GGCC	5 cut(s)	208, 741, 895, 965, 1058
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	903
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	1 cut(s)	909
BsiWI	CGTACG	1 cut(s)	946
BslFI	GGGAC	2 cut(s)	626, 936
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	2 cut(s)	626, 936
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	5 cut(s)	208, 741, 895, 965, 1058
Bso31I	GGTCTC	1 cut(s)	778
BsoBI	CYCGRG	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp143I	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
BspACI	CCGC	2 cut(s)	28, 310
BspANI	GGCC	5 cut(s)	208, 741, 895, 965, 1058
BspCNI	CTCAG	7 cut(s)	78, 468, 544, 600, 889, 915, 1066
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	5 cut(s)	22, 105, 163, 747, 999
BspPI	GGATC	6 cut(s)	15, 28, 98, 111, 319, 680
BspT107I	GGYRCC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	778
BsrI	ACTGG	4 cut(s)	222, 394, 404, 1041
BssECI	CCNNGG	4 cut(s)	36, 107, 582, 954
BssMI	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
BssNAI	GTATAC	1 cut(s)	1034
BssT1I	CCWWGG	2 cut(s)	107, 582
Bst1107I	GTATAC	1 cut(s)	1034
Bst2UI	CCWGG	3 cut(s)	37, 743, 892
Bst4CI	ACNGT	1 cut(s)	946
Bst6I	CTCTTC	2 cut(s)	1006, 1011
BstC8I	GCNNGC	2 cut(s)	579, 739
BstDEI	CTNAG	9 cut(s)	86, 384, 476, 552, 608, 622, 897, 902, 1053
BstF5I	GGATG	2 cut(s)	799, 1054
BstHHI	GCGC	1 cut(s)	1044
BstKTI	GATC	8 cut(s)	23, 106, 327, 639, 675, 769, 853, 864
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
BstNI	CCWGG	3 cut(s)	37, 743, 892
BstSCI	CCNGG	3 cut(s)	35, 741, 890
BstV1I	GCAGC	2 cut(s)	120, 385
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	4 cut(s)	20, 103, 324, 672
BstYI	RGATCY	4 cut(s)	20, 103, 324, 672
BstZ17I	GTATAC	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	978
BsuRI	GGCC	5 cut(s)	208, 741, 895, 965, 1058
BtsCI	GGATG	2 cut(s)	799, 1054
BtsI	GCAGTG	4 cut(s)	48, 101, 178, 222
BtsIMutI	CAGTG	4 cut(s)	48, 101, 178, 222
Cac8I	GCNNGC	2 cut(s)	579, 739
CaiI	CAGNNNCTG	2 cut(s)	428, 859
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	1044
Cfr13I	GGNCC	1 cut(s)	906
Csp6I	GTAC	4 cut(s)	56, 162, 527, 947
CviAII	CATG	3 cut(s)	377, 665, 884
CviQI	GTAC	4 cut(s)	56, 162, 527, 947
DdeI	CTNAG	9 cut(s)	86, 384, 476, 552, 608, 622, 897, 902, 1053
DpnI	GATC	8 cut(s)	22, 105, 326, 638, 674, 768, 852, 863
DpnII	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	2 cut(s)	1006, 1011
EarI	CTCTTC	2 cut(s)	1006, 1011
Ecl136II	GAGCTC	1 cut(s)	901
Eco130I	CCWWGG	2 cut(s)	107, 582
Eco147I	AGGCCT	2 cut(s)	895, 1058
Eco24I	GRGCYC	1 cut(s)	903
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	901
EcoRII	CCWGG	3 cut(s)	35, 741, 890
EcoT14I	CCWWGG	2 cut(s)	107, 582
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	2 cut(s)	107, 582
FaeI	CATG	3 cut(s)	380, 668, 887
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	2 cut(s)	626, 936
FatI	CATG	3 cut(s)	376, 664, 883
FbaI	TGATCA	1 cut(s)	861
FblI	GTMKAC	1 cut(s)	1033
Fnu4HI	GCNGC	2 cut(s)	134, 399
FokI	GGATG	2 cut(s)	806, 1061
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	2 cut(s)	134, 399
FspBI	CTAG	3 cut(s)	332, 618, 758
GlaI	GCGC	1 cut(s)	1043
GluI	GCNGC	2 cut(s)	134, 399
GsuI	CTGGAG	2 cut(s)	387, 1058
HaeIII	GGCC	5 cut(s)	208, 741, 895, 965, 1058
HapII	CCGG	1 cut(s)	909
HhaI	GCGC	1 cut(s)	1044
Hin1II	CATG	3 cut(s)	380, 668, 887
Hin6I	GCGC	1 cut(s)	1042
HinP1I	GCGC	1 cut(s)	1042
HincII	GTYRAC	4 cut(s)	235, 268, 409, 775
HindII	GTYRAC	4 cut(s)	235, 268, 409, 775
HinfI	GANTC	1 cut(s)	380
HpaI	GTTAAC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	909
HphI	GGTGA	2 cut(s)	923, 934
Hpy166II	GTNNAC	5 cut(s)	235, 268, 409, 775, 1034
Hpy188I	TCNGA	5 cut(s)	122, 477, 609, 672, 861
Hpy188III	TCNNGA	8 cut(s)	18, 247, 377, 758, 781, 848, 865, 953
Hpy8I	GTNNAC	5 cut(s)	235, 268, 409, 775, 1034
Hpy99I	CGWCG	1 cut(s)	1032
HpyAV	CCTTC	2 cut(s)	388, 552
HpyCH4III	ACNGT	1 cut(s)	946
HpyCH4IV	ACGT	2 cut(s)	949, 1030
HpyCH4V	TGCA	2 cut(s)	227, 694
HpyF3I	CTNAG	9 cut(s)	86, 384, 476, 552, 608, 622, 897, 902, 1053
HpySE526I	ACGT	2 cut(s)	949, 1030
Hsp92II	CATG	3 cut(s)	380, 668, 887
HspAI	GCGC	1 cut(s)	1042
KpnI	GGTACC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	861
KspAI	GTTAAC	1 cut(s)	409
Kzo9I	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
LmnI	GCTCC	3 cut(s)	91, 406, 1039
Lsp1109I	GCAGC	2 cut(s)	120, 385
LweI	GCATC	3 cut(s)	139, 236, 1039
MaeI	CTAG	3 cut(s)	332, 618, 758
MaeII	ACGT	2 cut(s)	949, 1030
MaeIII	GTNAC	4 cut(s)	220, 337, 886, 1078
MalI	GATC	8 cut(s)	22, 105, 326, 638, 674, 768, 852, 863
MboI	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
MboII	GAAGA	5 cut(s)	152, 262, 596, 1023, 1028
MflI	RGATCY	4 cut(s)	20, 103, 324, 672
MhlI	GDGCHC	1 cut(s)	903
MluCI	AATT	8 cut(s)	8, 64, 123, 240, 258, 282, 440, 707
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	3 cut(s)	352, 650, 778
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	3 cut(s)	408, 689, 843
MslI	CAYNNNNRTG	3 cut(s)	183, 302, 368
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	3 cut(s)	37, 743, 892
Mva1269I	GAATGC	1 cut(s)	600
MvaI	CCWGG	3 cut(s)	37, 743, 892
NdeII	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
NlaIII	CATG	3 cut(s)	380, 668, 887
NlaIV	GGNNCC	5 cut(s)	22, 105, 163, 747, 999
NmuCI	GTSAC	2 cut(s)	220, 1078
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	2 cut(s)	895, 1058
PctI	GAATGC	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	441
Pfl23II	CGTACG	1 cut(s)	946
PkrI	GCNGC	2 cut(s)	135, 400
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp124BI	GAGCTC	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	35, 741, 890
PspGI	CCWGG	3 cut(s)	35, 741, 890
PspLI	CGTACG	1 cut(s)	946
PspN4I	GGNNCC	5 cut(s)	22, 105, 163, 747, 999
PspPI	GGNCC	1 cut(s)	906
PstNI	CAGNNNCTG	2 cut(s)	428, 859
PsuI	RGATCY	4 cut(s)	20, 103, 324, 672
RsaI	GTAC	4 cut(s)	57, 163, 528, 948
RsaNI	GTAC	4 cut(s)	56, 162, 527, 947
RseI	CAYNNNNRTG	3 cut(s)	183, 302, 368
SacI	GAGCTC	1 cut(s)	903
SaqAI	TTAA	3 cut(s)	408, 689, 843
SatI	GCNGC	2 cut(s)	134, 399
Sau3AI	GATC	8 cut(s)	20, 103, 324, 636, 672, 766, 850, 861
Sau96I	GGNCC	1 cut(s)	906
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	3 cut(s)	37, 743, 892
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	3 cut(s)	139, 236, 1039
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	3 cut(s)	183, 302, 368
SmlI	CTYRAG	2 cut(s)	70, 781
SmoI	CTYRAG	2 cut(s)	70, 781
Sse9I	AATT	8 cut(s)	8, 64, 123, 240, 258, 282, 440, 707
SseBI	AGGCCT	2 cut(s)	895, 1058
SsiI	CCGC	2 cut(s)	28, 310
SspMI	CTAG	3 cut(s)	332, 618, 758
SstI	GAGCTC	1 cut(s)	903
StuI	AGGCCT	2 cut(s)	895, 1058
StyD4I	CCNGG	3 cut(s)	35, 741, 890
StyI	CCWWGG	2 cut(s)	107, 582
TaaI	ACNGT	1 cut(s)	946
TaiI	ACGT	2 cut(s)	952, 1033
TaqI	TCGA	2 cut(s)	765, 920
TasI	AATT	8 cut(s)	8, 64, 123, 240, 258, 282, 440, 707
TatI	WGTACW	1 cut(s)	526
Tru1I	TTAA	3 cut(s)	408, 689, 843
Tru9I	TTAA	3 cut(s)	408, 689, 843
TscAI	CASTG	4 cut(s)	48, 101, 185, 229
TseFI	GTSAC	2 cut(s)	220, 1078
TseI	GCWGC	2 cut(s)	133, 398
Tsp45I	GTSAC	2 cut(s)	220, 1078
TspDTI	ATGAA	3 cut(s)	17, 352, 1056
TspGWI	ACGGA	2 cut(s)	606, 1003
TspRI	CASTG	4 cut(s)	48, 101, 185, 229
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	1 cut(s)	8
XbaI	TCTAGA	1 cut(s)	757
XmiI	GTMKAC	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	332, 618, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.