Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

44095455 .. 44105119

Gene Structure 9665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGCTCGATTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCTTATCTTCTTTGGAAATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAAAGGCACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCTCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTAAGGATTATACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGGTAGAATTGGTAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACCCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAATTGACCTGAAAATAGTTGGTGCTGTAATATGGGTGGGGAGCTCAGCTATTGAGATCCAACTAGAAGTCACTCAATCCATAGAAGAGAAACATCCATGGTCGGATCTTCGGAGGGTGCACCGAGCTTTTGAATTGGCTTTCTCCACAGCTTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTTTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGCTGATCCTGATCAGCCCCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGAACTCAGGTGTCAAATACATTTTATTTCACTTTCACCGTACGTCCCAAGGCAAAGGCCACGTAAAAAGGATTTAGGAAACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

312

Amino Acids

35.33

Weight (kDa)

7.7

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	933
AciI	CCGC	3 cut(s)	212, 427, 727
AclWI	GGATC	6 cut(s)	95, 320, 333, 541, 603, 755
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
AgsI	TTSAA	5 cut(s)	458, 491, 623, 733, 788
AjnI	CCWGG	1 cut(s)	806
AluBI	AGCT	7 cut(s)	126, 380, 534, 539, 617, 641, 758
AluI	AGCT	7 cut(s)	126, 380, 534, 539, 617, 641, 758
Alw21I	GWGCWC	2 cut(s)	536, 612
Alw26I	GTCTC	1 cut(s)	694
Alw44I	GTGCAC	1 cut(s)	608
AlwI	GGATC	6 cut(s)	95, 320, 333, 541, 603, 755
AlwNI	CAGNNNCTG	2 cut(s)	758, 775
AoxI	GGCC	5 cut(s)	131, 428, 655, 809, 869
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	96, 132, 208
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	99, 166, 840
AvaII	GGWCC	2 cut(s)	96, 208
BaeGI	GKGCMC	1 cut(s)	612
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	8, 536
Bbv12I	GWGCWC	2 cut(s)	536, 612
BbvI	GCAGC	1 cut(s)	648
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	808
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	4 cut(s)	377, 554, 674, 937
BisI	GCNGC	2 cut(s)	428, 662
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	2 cut(s)	429, 663
Bme1390I	CCNGG	2 cut(s)	135, 808
Bme18I	GGWCC	2 cut(s)	96, 208
BmgT120I	GGNCC	3 cut(s)	96, 132, 208
BmiI	GGNNCC	4 cut(s)	210, 327, 385, 905
BmrFI	CCNGG	2 cut(s)	135, 808
BmsI	GCATC	2 cut(s)	361, 458
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	875
BsaBI	GATNNNNATC	1 cut(s)	765
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	329, 587, 860
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
Bse118I	RCCGGY	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	808
BseDI	CCNNGG	3 cut(s)	329, 587, 860
BseGI	GGATG	2 cut(s)	583, 715
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BseMII	CTCAG	2 cut(s)	549, 832
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	648
BshFI	GGCC	5 cut(s)	133, 430, 657, 811, 871
BsiHKAI	GWGCWC	2 cut(s)	536, 612
BsiSI	CCGG	3 cut(s)	44, 135, 152
BsiWI	CGTACG	1 cut(s)	852
BslFI	GGGAC	1 cut(s)	842
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	842
BsnI	GGCC	5 cut(s)	133, 430, 657, 811, 871
Bso31I	GGTCTC	1 cut(s)	694
Bsp1286I	GDGCHC	3 cut(s)	8, 536, 612
Bsp143I	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
Bsp1720I	GCTNAGC	1 cut(s)	535
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	3 cut(s)	212, 427, 727
BspANI	GGCC	5 cut(s)	133, 430, 657, 811, 871
BspCNI	CTCAG	2 cut(s)	548, 831
BspLI	GGNNCC	4 cut(s)	210, 327, 385, 905
BspPI	GGATC	6 cut(s)	95, 320, 333, 541, 603, 755
BspTNI	GGTCTC	1 cut(s)	694
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	329, 587, 860
BssMI	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
BssNAI	GTATAC	1 cut(s)	934
BssT1I	CCWWGG	3 cut(s)	329, 587, 860
Bst1107I	GTATAC	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	808
Bst4CI	ACNGT	2 cut(s)	168, 852
Bst6I	CTCTTC	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	875
BstC8I	GCNNGC	3 cut(s)	174, 655, 659
BstDEI	CTNAG	4 cut(s)	183, 294, 535, 818
BstDSI	CCRYGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	583, 715
BstKTI	GATC	8 cut(s)	103, 328, 412, 549, 598, 685, 763, 769
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 475
BstNI	CCWGG	1 cut(s)	808
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	133, 806
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	325, 546, 595
BstYI	RGATCY	3 cut(s)	325, 546, 595
BstZ17I	GTATAC	1 cut(s)	934
BsuRI	GGCC	5 cut(s)	133, 430, 657, 811, 871
BtgI	CCRYGG	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	583, 715
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	3 cut(s)	164, 400, 444
Cac8I	GCNNGC	3 cut(s)	174, 655, 659
CaiI	CAGNNNCTG	2 cut(s)	758, 775
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	96, 132, 208
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	5 cut(s)	15, 173, 588, 686, 800
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	4 cut(s)	183, 294, 535, 818
DpnI	GATC	8 cut(s)	102, 327, 411, 548, 597, 684, 762, 768
DpnII	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
EaeI	YGGCCR	1 cut(s)	428
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	3 cut(s)	329, 587, 860
Eco24I	GRGCYC	2 cut(s)	8, 536
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	96, 208
Eco53kI	GAGCTC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	806
EcoT14I	CCWWGG	3 cut(s)	329, 587, 860
EcoT38I	GRGCYC	2 cut(s)	8, 536
ErhI	CCWWGG	3 cut(s)	329, 587, 860
FaeI	CATG	5 cut(s)	18, 176, 591, 689, 803
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	5 cut(s)	14, 172, 587, 685, 799
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	2 cut(s)	428, 662
FokI	GGATG	2 cut(s)	570, 722
FriOI	GRGCYC	2 cut(s)	8, 536
Fsp4HI	GCNGC	2 cut(s)	428, 662
FspBI	CTAG	4 cut(s)	377, 554, 674, 937
GluI	GCNGC	2 cut(s)	428, 662
HaeIII	GGCC	5 cut(s)	133, 430, 657, 811, 871
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	5 cut(s)	18, 176, 591, 689, 803
HincII	GTYRAC	2 cut(s)	54, 691
HindII	GTYRAC	2 cut(s)	54, 691
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	3 cut(s)	99, 166, 840
Hpy166II	GTNNAC	4 cut(s)	54, 610, 691, 934
Hpy188I	TCNGA	4 cut(s)	100, 325, 595, 603
Hpy188III	TCNNGA	4 cut(s)	206, 413, 674, 764
Hpy8I	GTNNAC	4 cut(s)	54, 610, 691, 934
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	2 cut(s)	30, 114
HpyCH4III	ACNGT	2 cut(s)	168, 852
HpyCH4IV	ACGT	3 cut(s)	855, 874, 930
HpyCH4V	TGCA	3 cut(s)	176, 449, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 475
HpyF3I	CTNAG	4 cut(s)	183, 294, 535, 818
HpySE526I	ACGT	3 cut(s)	855, 874, 930
Hsp92II	CATG	5 cut(s)	18, 176, 591, 689, 803
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
LmnI	GCTCC	3 cut(s)	229, 313, 531
Lsp1109I	GCAGC	1 cut(s)	648
LweI	GCATC	2 cut(s)	361, 458
MaeI	CTAG	4 cut(s)	377, 554, 674, 937
MaeII	ACGT	3 cut(s)	855, 874, 930
MaeIII	GTNAC	5 cut(s)	86, 154, 442, 559, 802
MalI	GATC	8 cut(s)	102, 327, 411, 548, 597, 684, 762, 768
MboI	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
MboII	GAAGA	7 cut(s)	54, 72, 484, 587, 590, 928, 931
MflI	RGATCY	3 cut(s)	325, 546, 595
MhlI	GDGCHC	3 cut(s)	8, 536, 612
MluCI	AATT	7 cut(s)	239, 276, 286, 345, 480, 492, 623
MmeI	TCCRAC	6 cut(s)	48, 54, 171, 573, 574, 694
MnlI	CCTC	7 cut(s)	189, 237, 268, 303, 331, 597, 670
MroXI	GAANNNNTTC	1 cut(s)	388
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 808
MvaI	CCWGG	1 cut(s)	808
MwoI	GCNNNNNNNGC	2 cut(s)	436, 475
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
NlaIII	CATG	5 cut(s)	18, 176, 591, 689, 803
NlaIV	GGNNCC	4 cut(s)	210, 327, 385, 905
NmuCI	GTSAC	4 cut(s)	86, 154, 442, 559
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	388
Pfl23II	CGTACG	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	429, 663
Ppu21I	YACGTR	1 cut(s)	875
Psp124BI	GAGCTC	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	806
PspLI	CGTACG	1 cut(s)	852
PspN4I	GGNNCC	4 cut(s)	210, 327, 385, 905
PspPI	GGNCC	3 cut(s)	96, 132, 208
PstNI	CAGNNNCTG	2 cut(s)	758, 775
PsuI	RGATCY	3 cut(s)	325, 546, 595
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	536
SatI	GCNGC	2 cut(s)	428, 662
Sau3AI	GATC	8 cut(s)	100, 325, 409, 546, 595, 682, 760, 766
Sau96I	GGNCC	3 cut(s)	96, 132, 208
ScrFI	CCNGG	2 cut(s)	135, 808
SduI	GDGCHC	3 cut(s)	8, 536, 612
SfaNI	GCATC	2 cut(s)	361, 458
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	96, 208
SmiMI	CAYNNNNRTG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	7 cut(s)	239, 276, 286, 345, 480, 492, 623
SsiI	CCGC	3 cut(s)	212, 427, 727
SspMI	CTAG	4 cut(s)	377, 554, 674, 937
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	133, 806
StyI	CCWWGG	3 cut(s)	329, 587, 860
TaaI	ACNGT	2 cut(s)	168, 852
TaiI	ACGT	3 cut(s)	858, 877, 933
TaqI	TCGA	2 cut(s)	8, 681
TasI	AATT	7 cut(s)	239, 276, 286, 345, 480, 492, 623
TauI	GCSGC	1 cut(s)	430
TscAI	CASTG	3 cut(s)	171, 407, 451
TseFI	GTSAC	4 cut(s)	86, 154, 442, 559
TseI	GCWGC	1 cut(s)	661
Tsp45I	GTSAC	4 cut(s)	86, 154, 442, 559
TspGWI	ACGGA	1 cut(s)	909
TspRI	CASTG	3 cut(s)	171, 407, 451
VneI	GTGCAC	1 cut(s)	608
VpaK11BI	GGWCC	2 cut(s)	96, 208
XbaI	TCTAGA	1 cut(s)	673
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	933
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	4 cut(s)	377, 554, 674, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.