Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

16156222 .. 16158880

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g12680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCCTTGAATTCCTCTCTTCCATATCCCAATTCACCCGCCGCCATTCCCGTACTCGCCACCCTCTCTTGCCCTTTCGAAAACCCGCCTCCGTCCCAAGATGGGCCCAACGGTTCGACCCGGAAGCCCATTAGCCTCTGGCCGGGAATGTACCAGTCGCCTGTGACGAATGCGCTGTGGGAGGCGGGGTCTAAAATTTTCGAGAGGTTTTTTCTGGACCCGCCGAAAGATGCCCCTCCGCAGAGCGAGTTGCTGAACAAAGCGCCGTCGCAGAGCAGGACTTCGATTCTGTACAATTTCTCGACGGATTATATACTGCGGGAGCAGTACAGGGATCCTTGGAACGAGGTCCGAATTGGGAAGTTGCTTGAAGACCTTGATGCTTTAGCTGGAACCATTTCTGTGAAGCACTGTTGCGACGACGATAGCACAACAAGGCCACTCTTATTGGTCACGGCATCTGTTGACAAGATTGTTCTGAAGAAGCCGATTAGTGTTGATATTGATCTGAAAATAGTGGGTGCTGTCATATGGGTTGGACGGTCATCTATTGAGATTCAACTAGAAGTTATTCAGTCAGCAACAGATGAATCTGACATTGCAGACTCAGTAGCTCTTTCAGCAAACTTCATATTTGTGGCCCGTGATTCTAAGACTGGTAAAGCTGCCCCAGTTAATCGGTTATCGCCAGAAACTCAAAGAGAAATATTGCTTTTCGAGGAAGCGGAAGCCAGAAATAATCTGAGGAAAAGAAAGAGAGGAAGTGGAGACAGAAGGGAGTTTGAGAATGGAGAATTAAATAGAGTTAAAATATTGTTGGCTGAGGGAAGGATCGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

281

Amino Acids

31.0

Weight (kDa)

5.48

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	39, 42, 86, 185, 221, 239, 319, 725
AclWI	GGATC	3 cut(s)	329, 342, 839
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	10, 195
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	4 cut(s)	54, 152, 293, 329
AfiI	CCNNNNNNNGG	2 cut(s)	102, 142
AgsI	TTSAA	3 cut(s)	10, 371, 560
AloI	GAACNNNNNNTCC	1 cut(s)	819
AluBI	AGCT	3 cut(s)	389, 614, 665
AluI	AGCT	3 cut(s)	389, 614, 665
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	3 cut(s)	329, 342, 839
AoxI	GGCC	5 cut(s)	3, 104, 140, 437, 639
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	2 cut(s)	10, 195
Asp700I	GAANNNNTTC	2 cut(s)	397, 570
AspLEI	GCGC	2 cut(s)	175, 265
AspS9I	GGNCC	5 cut(s)	104, 105, 217, 349, 640
AsuC2I	CCSGG	2 cut(s)	121, 144
AsuHPI	GGTGA	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	217, 349
BaeGI	GKGCMC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	378
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	250, 471
BcnI	CCSGG	2 cut(s)	121, 144
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	1 cut(s)	563
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	2 cut(s)	42, 666
BlsI	GCNGC	2 cut(s)	43, 667
Bme1390I	CCNGG	2 cut(s)	121, 144
Bme18I	GGWCC	2 cut(s)	217, 349
BmgT120I	GGNCC	5 cut(s)	104, 105, 217, 349, 640
BmiI	GGNNCC	4 cut(s)	106, 219, 336, 394
BmrFI	CCNGG	2 cut(s)	121, 144
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	3 cut(s)	220, 370, 467
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	822
Bpu14I	TTCGAA	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	121, 144
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 142
Bse1I	ACTGG	3 cut(s)	154, 661, 671
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	338
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	2 cut(s)	102, 142
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	3 cut(s)	621, 734, 813
BseNI	ACTGG	3 cut(s)	154, 661, 671
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	652
BshFI	GGCC	5 cut(s)	5, 106, 142, 439, 641
BsiSI	CCGG	2 cut(s)	121, 143
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	102, 142
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	5 cut(s)	5, 106, 142, 439, 641
Bsp119I	TTCGAA	1 cut(s)	78
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	334, 505, 831
BspACI	CCGC	8 cut(s)	39, 42, 86, 185, 221, 239, 319, 725
BspANI	GGCC	5 cut(s)	5, 106, 142, 439, 641
BspCNI	CTCAG	3 cut(s)	620, 735, 814
BspLI	GGNNCC	4 cut(s)	106, 219, 336, 394
BspPI	GGATC	3 cut(s)	329, 342, 839
BspT104I	TTCGAA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	3 cut(s)	154, 661, 671
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	334, 505, 831
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	113, 413, 543
Bst6I	CTCTTC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	78
BstDEI	CTNAG	4 cut(s)	607, 651, 743, 822
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	2 cut(s)	175, 265
BstKTI	GATC	3 cut(s)	337, 508, 834
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	3 cut(s)	334, 505, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	119, 142
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	5, 106, 142, 439, 641
BtsIMutI	CAGTG	1 cut(s)	409
CfoI	GCGC	2 cut(s)	175, 265
Cfr13I	GGNCC	5 cut(s)	104, 105, 217, 349, 640
Csp6I	GTAC	4 cut(s)	53, 151, 292, 328
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviQI	GTAC	4 cut(s)	53, 151, 292, 328
DdeI	CTNAG	4 cut(s)	607, 651, 743, 822
DpnI	GATC	3 cut(s)	336, 507, 833
DpnII	GATC	3 cut(s)	334, 505, 831
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	217, 349
Eco57I	CTGAAG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	338
FaiI	YATR	6 cut(s)	25, 312, 314, 530, 532, 632
FaqI	GGGAC	1 cut(s)	79
FauI	CCCGC	5 cut(s)	46, 93, 178, 228, 312
FauNDI	CATATG	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	42, 666
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	42, 666
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	2 cut(s)	174, 264
GluI	GCNGC	2 cut(s)	42, 666
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	5 cut(s)	5, 106, 142, 439, 641
HapII	CCGG	2 cut(s)	121, 143
HhaI	GCGC	2 cut(s)	175, 265
Hin6I	GCGC	2 cut(s)	173, 263
HinP1I	GCGC	2 cut(s)	173, 263
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	5 cut(s)	286, 556, 590, 605, 647
HpaII	CCGG	2 cut(s)	121, 143
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	5 cut(s)	353, 480, 510, 595, 744
Hpy188III	TCNNGA	3 cut(s)	202, 215, 301
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	4 cut(s)	271, 307, 422, 425
HpyAV	CCTTC	2 cut(s)	768, 822
HpyCH4III	ACNGT	3 cut(s)	113, 413, 543
HpyCH4V	TGCA	1 cut(s)	602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	4 cut(s)	607, 651, 743, 822
HspAI	GCGC	2 cut(s)	173, 263
Kzo9I	GATC	3 cut(s)	334, 505, 831
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	3 cut(s)	220, 370, 467
MaeI	CTAG	1 cut(s)	563
MaeIII	GTNAC	2 cut(s)	163, 451
MalI	GATC	3 cut(s)	336, 507, 833
MboI	GATC	3 cut(s)	334, 505, 831
MboII	GAAGA	3 cut(s)	11, 383, 493
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	6 cut(s)	10, 31, 195, 295, 354, 794
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	517
MroXI	GAANNNNTTC	2 cut(s)	397, 570
MseI	TTAA	3 cut(s)	675, 797, 807
MslI	CAYNNNNRTG	2 cut(s)	401, 635
MspI	CCGG	2 cut(s)	121, 143
MspR9I	CCNGG	2 cut(s)	121, 144
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	620
NciI	CCSGG	2 cut(s)	121, 144
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	3 cut(s)	334, 505, 831
NlaIV	GGNNCC	4 cut(s)	106, 219, 336, 394
NmuCI	GTSAC	2 cut(s)	163, 451
NspV	TTCGAA	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	175
PdmI	GAANNNNTTC	2 cut(s)	397, 570
PfeI	GAWTC	4 cut(s)	286, 556, 590, 647
PkrI	GCNGC	2 cut(s)	43, 667
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PspN4I	GGNNCC	4 cut(s)	106, 219, 336, 394
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	5 cut(s)	104, 105, 217, 349, 640
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	4 cut(s)	54, 152, 293, 329
RsaNI	GTAC	4 cut(s)	53, 151, 292, 328
RseI	CAYNNNNRTG	2 cut(s)	401, 635
SaqAI	TTAA	3 cut(s)	675, 797, 807
SatI	GCNGC	2 cut(s)	42, 666
Sau3AI	GATC	3 cut(s)	334, 505, 831
Sau96I	GGNCC	5 cut(s)	104, 105, 217, 349, 640
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	121, 144
SduI	GDGCHC	1 cut(s)	108
SetI	ASST	6 cut(s)	209, 351, 378, 391, 616, 667
SfaNI	GCATC	3 cut(s)	220, 370, 467
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	2 cut(s)	217, 349
SmiMI	CAYNNNNRTG	2 cut(s)	401, 635
Sse9I	AATT	6 cut(s)	10, 31, 195, 295, 354, 794
SsiI	CCGC	8 cut(s)	39, 42, 86, 185, 221, 239, 319, 725
SspI	AATATT	2 cut(s)	708, 813
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	119, 142
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	113, 413, 543
TaqI	TCGA	6 cut(s)	78, 116, 201, 284, 302, 717
TasI	AATT	6 cut(s)	10, 31, 195, 295, 354, 794
TatI	WGTACW	2 cut(s)	291, 327
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	286, 556, 590, 647
Tru1I	TTAA	3 cut(s)	675, 797, 807
Tru9I	TTAA	3 cut(s)	675, 797, 807
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	2 cut(s)	163, 451
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	2 cut(s)	163, 451
TspDTI	ATGAA	2 cut(s)	603, 619
TspGWI	ACGGA	2 cut(s)	81, 320
TspRI	CASTG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	217, 349
XapI	RAATTY	2 cut(s)	10, 195
XmnI	GAANNNNTTC	2 cut(s)	397, 570
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.