Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

44900988 .. 44904291

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG258000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGGCTCGACTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCTTATCTTCTTTGGAGATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAAAGGCACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCTCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTACGGATTATACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGGTAGAATTGGGAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACTCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAAGACCTGAAAATAAAGTCTCTGACAATTCGGATTCTTTAGTCCTTTCAGCCAACTTCATATTTGCGGCTAGTGACTCTAAGAATGGGAAGGCTGCTCCAGTTAATTGGCTCTTACCAGAAACTGAAAGAGAAAAATTACTTTTCAAGGAAGCAGAACAGAGAAACATCCATGGTCGGATCTTCGGAGGATTTCGGATGCACCGAGCTTTTGAATTGGCTTTCTCCACAGCTTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTGATCCTGATCAGCCCCTGATTACTATTGAAATTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGGTATGTTCTACCAACTGCACATTAAGAACAAGAAAGTTAAATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

319

Amino Acids

35.75

Weight (kDa)

6.72

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	212, 427, 557, 808
AclWI	GGATC	6 cut(s)	67, 95, 320, 333, 677, 836
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
AgsI	TTSAA	6 cut(s)	458, 491, 637, 704, 814, 869
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	887
AluBI	AGCT	4 cut(s)	126, 380, 698, 722
AluI	AGCT	4 cut(s)	126, 380, 698, 722
Alw26I	GTCTC	2 cut(s)	514, 775
AlwI	GGATC	6 cut(s)	67, 95, 320, 333, 677, 836
AlwNI	CAGNNNCTG	2 cut(s)	614, 856
AoxI	GGCC	4 cut(s)	131, 428, 736, 890
ApeKI	GCWGC	2 cut(s)	584, 742
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	4 cut(s)	96, 132, 208, 903
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	99, 166
AvaII	GGWCC	3 cut(s)	96, 208, 903
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	571, 729
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	889
BclI	TGATCA	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	514, 775
BfaI	CTAG	3 cut(s)	377, 561, 755
BisI	GCNGC	4 cut(s)	428, 558, 585, 743
BlsI	GCNGC	4 cut(s)	429, 559, 586, 744
Bme1390I	CCNGG	2 cut(s)	135, 889
Bme18I	GGWCC	3 cut(s)	96, 208, 903
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmgT120I	GGNCC	4 cut(s)	96, 132, 208, 903
BmiI	GGNNCC	3 cut(s)	210, 327, 385
BmrFI	CCNGG	2 cut(s)	135, 889
BmsI	GCATC	3 cut(s)	361, 458, 678
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	799
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	846
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	2 cut(s)	329, 661
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	590, 906
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	889
BseDI	CCNNGG	2 cut(s)	329, 661
BseGI	GGATG	3 cut(s)	657, 693, 796
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	2 cut(s)	590, 906
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	571, 729
BsgI	GTGCAG	1 cut(s)	913
BshFI	GGCC	4 cut(s)	133, 430, 738, 892
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BsmAI	GTCTC	2 cut(s)	514, 775
BsnI	GGCC	4 cut(s)	133, 430, 738, 892
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	4 cut(s)	212, 427, 557, 808
BspANI	GGCC	4 cut(s)	133, 430, 738, 892
BspCNI	CTCAG	1 cut(s)	912
BspLI	GGNNCC	3 cut(s)	210, 327, 385
BspPI	GGATC	6 cut(s)	67, 95, 320, 333, 677, 836
BspTNI	GGTCTC	1 cut(s)	775
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	590, 906
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	329, 661
BssMI	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
BssT1I	CCWWGG	2 cut(s)	329, 661
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	174, 736, 740
BstDEI	CTNAG	3 cut(s)	183, 570, 899
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	3 cut(s)	657, 693, 796
BstKTI	GATC	8 cut(s)	75, 103, 328, 412, 672, 766, 844, 850
BstMAI	GTCTC	2 cut(s)	514, 775
BstMBI	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 475
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	133, 887
BstV1I	GCAGC	2 cut(s)	571, 729
BstX2I	RGATCY	3 cut(s)	72, 325, 669
BstXI	CCANNNNNNTGG	1 cut(s)	597
BstYI	RGATCY	3 cut(s)	72, 325, 669
BsuRI	GGCC	4 cut(s)	133, 430, 738, 892
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	3 cut(s)	657, 693, 796
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	4 cut(s)	164, 400, 444, 913
Cac8I	GCNNGC	3 cut(s)	174, 736, 740
CaiI	CAGNNNCTG	2 cut(s)	614, 856
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	96, 132, 208, 903
CseI	GACGC	1 cut(s)	230
CviAII	CATG	5 cut(s)	15, 173, 662, 767, 881
DdeI	CTNAG	3 cut(s)	183, 570, 899
DpnI	GATC	8 cut(s)	74, 102, 327, 411, 671, 765, 843, 849
DpnII	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	329, 661
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	96, 208, 903
Eco57I	CTGAAG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	887
EcoT14I	CCWWGG	2 cut(s)	329, 661
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	329, 661
FaeI	CATG	5 cut(s)	18, 176, 665, 770, 884
FatI	CATG	5 cut(s)	14, 172, 661, 766, 880
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	847
Fnu4HI	GCNGC	4 cut(s)	428, 558, 585, 743
FokI	GGATG	3 cut(s)	644, 700, 803
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	428, 558, 585, 743
FspBI	CTAG	3 cut(s)	377, 561, 755
GluI	GCNGC	4 cut(s)	428, 558, 585, 743
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	133, 430, 738, 892
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	5 cut(s)	18, 176, 665, 770, 884
HincII	GTYRAC	2 cut(s)	54, 772
HindII	GTYRAC	2 cut(s)	54, 772
HinfI	GANTC	2 cut(s)	524, 566
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	2 cut(s)	99, 166
Hpy166II	GTNNAC	2 cut(s)	54, 772
Hpy188I	TCNGA	7 cut(s)	100, 325, 514, 523, 669, 677, 687
Hpy188III	TCNNGA	5 cut(s)	206, 413, 755, 778, 845
Hpy8I	GTNNAC	2 cut(s)	54, 772
HpyAV	CCTTC	3 cut(s)	30, 114, 574
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	176, 449, 691, 930
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 475
HpyF3I	CTNAG	3 cut(s)	183, 570, 899
Hsp92II	CATG	5 cut(s)	18, 176, 665, 770, 884
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
LmnI	GCTCC	3 cut(s)	229, 313, 592
Lsp1109I	GCAGC	2 cut(s)	571, 729
LweI	GCATC	3 cut(s)	361, 458, 678
MaeI	CTAG	3 cut(s)	377, 561, 755
MaeIII	GTNAC	5 cut(s)	86, 154, 442, 563, 883
MalI	GATC	8 cut(s)	74, 102, 327, 411, 671, 765, 843, 849
MboI	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
MboII	GAAGA	4 cut(s)	54, 72, 484, 664
MflI	RGATCY	3 cut(s)	72, 325, 669
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	5 cut(s)	48, 54, 171, 647, 775
MnlI	CCTC	8 cut(s)	189, 237, 268, 303, 331, 671, 751, 904
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	3 cut(s)	594, 935, 950
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 889
MvaI	CCWGG	1 cut(s)	889
MwoI	GCNNNNNNNGC	2 cut(s)	436, 475
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
NlaIII	CATG	5 cut(s)	18, 176, 665, 770, 884
NlaIV	GGNNCC	3 cut(s)	210, 327, 385
NmuCI	GTSAC	4 cut(s)	86, 154, 442, 563
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	4 cut(s)	429, 559, 586, 744
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	3 cut(s)	210, 327, 385
PspPI	GGNCC	4 cut(s)	96, 132, 208, 903
PstNI	CAGNNNCTG	2 cut(s)	614, 856
PsuI	RGATCY	3 cut(s)	72, 325, 669
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	594, 935, 950
SatI	GCNGC	4 cut(s)	428, 558, 585, 743
Sau3AI	GATC	8 cut(s)	72, 100, 325, 409, 669, 763, 841, 847
Sau96I	GGNCC	4 cut(s)	96, 132, 208, 903
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	135, 889
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	361, 458, 678
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	96, 208, 903
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	778
SmoI	CTYRAG	1 cut(s)	778
SphI	GCATGC	1 cut(s)	176
SsiI	CCGC	4 cut(s)	212, 427, 557, 808
SspMI	CTAG	3 cut(s)	377, 561, 755
StyD4I	CCNGG	2 cut(s)	133, 887
StyI	CCWWGG	2 cut(s)	329, 661
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	2 cut(s)	8, 762
TauI	GCSGC	2 cut(s)	430, 560
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	3 cut(s)	594, 935, 950
Tru9I	TTAA	3 cut(s)	594, 935, 950
TscAI	CASTG	4 cut(s)	171, 407, 451, 913
TseFI	GTSAC	4 cut(s)	86, 154, 442, 563
TseI	GCWGC	2 cut(s)	584, 742
Tsp45I	GTSAC	4 cut(s)	86, 154, 442, 563
TspDTI	ATGAA	1 cut(s)	538
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	4 cut(s)	171, 407, 451, 913
VpaK11BI	GGWCC	3 cut(s)	96, 208, 903
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	3 cut(s)	377, 561, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.