Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Forward (+)

25960669 .. 25962248

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCGGCCACTCTTGCTGGTCACTGCATCTGTCGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAATTGACCTGAAATTAGTTGGTGCTGTAATATGGGTGGGGAGCTCAGGCTCAGCTATTGAGATCCAACTAGAAGTCACTCAATCCATAGAAGCCACAGATCCTACCAAATGGCAGTTTAAAGATCGATTTGTGCTCCTCCATGTGAAGTGGATCTTCTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCTGAGGGATACCCGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTCGGAGGGTTTCTGATGCACCGAGCTTTTGAATTGGCTTTCTCCACAGCTTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTAATCCTGATCAGCCCCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGGTGTCAAATACATTTTATTTCACTTTCACAGTACGTCCCGAGGCAAAGGCCACTAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTAGAGCGCAAGGATGCTCAGGCCTTGCTTTCATCAACAAATAAACACGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

247

Amino Acids

28.04

Weight (kDa)

6.32

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	685
AciI	CCGC	3 cut(s)	4, 277, 469
AclWI	GGATC	4 cut(s)	124, 161, 227, 338
AcoI	YGGCCR	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	606
AgsI	TTSAA	4 cut(s)	68, 365, 475, 530
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	4 cut(s)	111, 122, 359, 383
AluI	AGCT	4 cut(s)	111, 122, 359, 383
Alw21I	GWGCWC	2 cut(s)	113, 204
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	4 cut(s)	124, 161, 227, 338
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	5 cut(s)	5, 397, 551, 621, 708
ApeKI	GCWGC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	564
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	113, 204
BbvI	GCAGC	1 cut(s)	390
BciT130I	CCWGG	1 cut(s)	550
BciVI	GTATCC	2 cut(s)	265, 636
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	3 cut(s)	137, 416, 689
BfuI	GTATCC	2 cut(s)	265, 636
BisI	GCNGC	2 cut(s)	5, 404
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	2 cut(s)	6, 405
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	564
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	3 cut(s)	35, 339, 691
Bpu10I	CCTNAGC	2 cut(s)	112, 705
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	240, 322, 612
Bse1I	ACTGG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	550
BseCI	ATCGAT	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	240, 322, 612
BseGI	GGATG	3 cut(s)	318, 457, 706
BseMII	CTCAG	5 cut(s)	126, 132, 257, 574, 719
BseNI	ACTGG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	5 cut(s)	7, 399, 553, 623, 710
BshVI	ATCGAT	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	113, 204
BsiHKCI	CYCGRG	1 cut(s)	611
BslFI	GGGAC	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	5 cut(s)	7, 399, 553, 623, 710
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	113, 204
Bsp143I	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	3 cut(s)	4, 277, 469
BspANI	GGCC	5 cut(s)	7, 399, 553, 623, 710
BspCNI	CTCAG	5 cut(s)	125, 131, 258, 573, 718
BspDI	ATCGAT	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	740
BspLI	GGNNCC	1 cut(s)	657
BspPI	GGATC	4 cut(s)	124, 161, 227, 338
BspTNI	GGTCTC	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	3 cut(s)	240, 322, 612
BssMI	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
BssNAI	GTATAC	1 cut(s)	686
BssT1I	CCWWGG	2 cut(s)	240, 322
Bst1107I	GTATAC	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	237, 397, 401
BstDEI	CTNAG	6 cut(s)	112, 118, 266, 280, 560, 705
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	318, 457, 706
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	8 cut(s)	132, 169, 193, 222, 297, 333, 427, 511
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 52
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	4 cut(s)	129, 166, 219, 330
BstYI	RGATCY	4 cut(s)	129, 166, 219, 330
BstZ17I	GTATAC	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	265, 636
BsuRI	GGCC	5 cut(s)	7, 399, 553, 623, 710
BsuTUI	ATCGAT	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	318, 457, 706
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	2 cut(s)	21, 574
Cac8I	GCNNGC	3 cut(s)	237, 397, 401
CaiI	CAGNNNCTG	1 cut(s)	517
CciI	TCATGA	1 cut(s)	740
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	1 cut(s)	564
ClaI	ATCGAT	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	5 cut(s)	209, 323, 428, 542, 741
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	6 cut(s)	112, 118, 266, 280, 560, 705
DpnI	GATC	8 cut(s)	131, 168, 192, 221, 296, 332, 426, 510
DpnII	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	5
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	240, 322
Eco147I	AGGCCT	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	564
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	240, 322
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	240, 322
FaeI	CATG	5 cut(s)	212, 326, 431, 545, 744
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	5 cut(s)	208, 322, 427, 541, 740
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	5, 404
FokI	GGATG	3 cut(s)	305, 464, 713
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	5, 404
FspBI	CTAG	3 cut(s)	137, 416, 689
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	2 cut(s)	5, 404
HaeIII	GGCC	5 cut(s)	7, 399, 553, 623, 710
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	5 cut(s)	212, 326, 431, 545, 744
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	737
Hpy166II	GTNNAC	2 cut(s)	433, 686
Hpy188I	TCNGA	4 cut(s)	267, 330, 338, 348
Hpy188III	TCNNGA	5 cut(s)	416, 439, 506, 611, 741
Hpy8I	GTNNAC	2 cut(s)	433, 686
Hpy99I	CGWCG	1 cut(s)	684
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	607, 682
HpyCH4V	TGCA	2 cut(s)	26, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 52
HpyF3I	CTNAG	6 cut(s)	112, 118, 266, 280, 560, 705
HpySE526I	ACGT	2 cut(s)	607, 682
Hsp92II	CATG	5 cut(s)	212, 326, 431, 545, 744
HspAI	GCGC	1 cut(s)	694
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
LmnI	GCTCC	2 cut(s)	108, 207
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	3 cut(s)	35, 339, 691
MaeI	CTAG	3 cut(s)	137, 416, 689
MaeII	ACGT	2 cut(s)	607, 682
MaeIII	GTNAC	3 cut(s)	19, 142, 544
MalI	GATC	8 cut(s)	131, 168, 192, 221, 296, 332, 426, 510
MboI	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
MboII	GAAGA	6 cut(s)	61, 214, 254, 325, 680, 683
MflI	RGATCY	4 cut(s)	129, 166, 219, 330
MhlI	GDGCHC	2 cut(s)	113, 204
MluCI	AATT	4 cut(s)	57, 69, 80, 365
MmeI	TCCRAC	3 cut(s)	157, 308, 436
MnlI	CCTC	6 cut(s)	215, 261, 332, 412, 565, 607
MseI	TTAA	2 cut(s)	186, 501
MspR9I	CCNGG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	13, 52
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
NlaIII	CATG	5 cut(s)	212, 326, 431, 545, 744
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	2 cut(s)	19, 142
PagI	TCATGA	1 cut(s)	740
PceI	AGGCCT	1 cut(s)	710
PctI	GAATGC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	2 cut(s)	6, 405
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	4 cut(s)	129, 166, 219, 330
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	186, 501
SatI	GCNGC	2 cut(s)	5, 404
Sau3AI	GATC	8 cut(s)	129, 166, 190, 219, 294, 330, 424, 508
Sau96I	GGNCC	1 cut(s)	564
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	2 cut(s)	113, 204
SfaNI	GCATC	3 cut(s)	35, 339, 691
SinI	GGWCC	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	4 cut(s)	57, 69, 80, 365
SseBI	AGGCCT	1 cut(s)	710
SsiI	CCGC	3 cut(s)	4, 277, 469
SspMI	CTAG	3 cut(s)	137, 416, 689
SstI	GAGCTC	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	2 cut(s)	240, 322
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	2 cut(s)	610, 685
TaqI	TCGA	3 cut(s)	33, 193, 423
TasI	AATT	4 cut(s)	57, 69, 80, 365
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	2 cut(s)	186, 501
Tru9I	TTAA	2 cut(s)	186, 501
TscAI	CASTG	2 cut(s)	28, 574
TseFI	GTSAC	2 cut(s)	19, 142
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	2 cut(s)	19, 142
TspDTI	ATGAA	1 cut(s)	708
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	2 cut(s)	28, 574
VpaK11BI	GGWCC	1 cut(s)	564
XbaI	TCTAGA	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	685
XspI	CTAG	3 cut(s)	137, 416, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.