Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000569.1

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

3124 .. 5487

Gene Structure 2364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000569.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgggctcgacttcatgtccttccaactccaacaccaccattccggtagtgtcaaccttatcttctttggagatcccatcttcgggtcacaaaaggtccgatccttcaccccaaatgcccattagcttgtggcccggaatgttccactcgccggtgacaatggcactgtggcatgcaagaactaagaagttggagaggctctttctggacccgccaatggacgctcctccacaaagcgaattgctcaacaaaactccctcgcagagcaggactacaattctctataatttctctaaggattatacattgagggagcagtattcggatccttggaatgagggtagaattgggaagttgctcaaagaccttgatgctctagctggaaccatttctgtcaagcactgctatgatcttgacagcacaatgcggccactcttgctggtcactgcatctgttgaaaacattgtgctgaagaagccaattagtgttgaaagacctgaaaatagttggtgctgtaatatggaagtctctgacaattcggattctttagtcctttcagccaacttcatatttgcggctagtgactctaagaatgggaaggctgctccagttaattggctcttaccagaaactgaaagagaaaaattacttttcaaggaagcagaagtaagaaataatctgaggaaaagatcaagaggaggacaaaaaagtttctttgagaatggagaagtaaatagacttgaaacactgttggccgagggaaggatcttctgtgatatgcctgccttggcagacagagatagcattcttcagagggatacccgcttagagaactcattgatctgccaaccacagcagagaaacatccatggtctgatcttcggaggatttcggatgcaccgagcttttgaattggctttctccacagcttatgcctttgctggcctgctgccttgctttctagaggtcgatcatgttgacttcttgagacctgtggatgttggagatttcctgcggttcaaatctcgtgttctttacacagaagttaatcctgatcagcccctgattactattgaagttgttgctcatgttaccaggccagaactcaggcccagtgaggtgtcaagtacattttatttcactttcacagtacgtcccgaggcaaaggccacgaaaaatggatttaggaaacggaatgtggttccagtaacagaagaagaagcacgacgtatactagagcgcaaggatgctcaggccttgctttcatcaacaaataaacacgaatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

429

Amino Acids

48.49

Weight (kDa)

7.63

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1231
AciI	CCGC	5 cut(s)	212, 427, 575, 823, 1015
AclWI	GGATC	5 cut(s)	67, 95, 320, 333, 773
AcoI	YGGCCR	2 cut(s)	428, 753
AcuI	CTGAAG	2 cut(s)	491, 794
AfaI	GTAC	2 cut(s)	1129, 1152
AfiI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 762
AgsI	TTSAA	7 cut(s)	458, 491, 655, 743, 911, 1021, 1076
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	1094
AluBI	AGCT	4 cut(s)	126, 380, 905, 929
AluI	AGCT	4 cut(s)	126, 380, 905, 929
Alw26I	GTCTC	2 cut(s)	532, 982
AlwI	GGATC	5 cut(s)	67, 95, 320, 333, 773
AlwNI	CAGNNNCTG	2 cut(s)	632, 1063
Ama87I	CYCGRG	1 cut(s)	1157
AoxI	GGCC	8 cut(s)	131, 428, 753, 943, 1097, 1109, 1167, 1254
ApeKI	GCWGC	2 cut(s)	602, 949
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	1242
AspS9I	GGNCC	4 cut(s)	96, 132, 208, 1110
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	99, 166
AvaI	CYCGRG	1 cut(s)	1157
AvaII	GGWCC	2 cut(s)	96, 208
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	1026
BbvI	GCAGC	2 cut(s)	589, 936
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	1096
BciVI	GTATCC	1 cut(s)	811
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	532, 982
BfaI	CTAG	4 cut(s)	377, 579, 962, 1235
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	4 cut(s)	428, 576, 603, 950
BlsI	GCNGC	4 cut(s)	429, 577, 604, 951
Bme1390I	CCNGG	2 cut(s)	135, 1096
Bme18I	GGWCC	2 cut(s)	96, 208
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	1157
BmgT120I	GGNCC	4 cut(s)	96, 132, 208, 1110
BmiI	GGNNCC	4 cut(s)	210, 327, 385, 1203
BmrFI	CCNGG	2 cut(s)	135, 1096
BmrI	ACTGGG	1 cut(s)	1107
BmsI	GCATC	4 cut(s)	361, 458, 885, 1237
BmuI	ACTGGG	1 cut(s)	1107
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	1251
BpuEI	CTTGAG	1 cut(s)	1006
BpuMI	CCSGG	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	982
BsaJI	CCNNGG	5 cut(s)	329, 756, 786, 868, 1158
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 762
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	608, 1113, 1205
BseBI	CCWGG	1 cut(s)	1096
BseDI	CCNNGG	5 cut(s)	329, 756, 786, 868, 1158
BseGI	GGATG	4 cut(s)	864, 900, 1003, 1252
BseLI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 762
BseMII	CTCAG	3 cut(s)	671, 1120, 1265
BseNI	ACTGG	3 cut(s)	608, 1113, 1205
BseRI	GAGGAG	2 cut(s)	216, 711
BseXI	GCAGC	2 cut(s)	589, 936
BshFI	GGCC	8 cut(s)	133, 430, 755, 945, 1099, 1111, 1169, 1256
BsiHKCI	CYCGRG	1 cut(s)	1157
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslFI	GGGAC	1 cut(s)	1140
BslI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 762
BsmAI	GTCTC	2 cut(s)	532, 982
BsmFI	GGGAC	1 cut(s)	1140
BsmI	GAATGC	1 cut(s)	804
BsnI	GGCC	8 cut(s)	133, 430, 755, 945, 1099, 1111, 1169, 1256
Bso31I	GGTCTC	1 cut(s)	982
BsoBI	CYCGRG	1 cut(s)	1157
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	5 cut(s)	212, 427, 575, 823, 1015
BspANI	GGCC	8 cut(s)	133, 430, 755, 945, 1099, 1111, 1169, 1256
BspCNI	CTCAG	3 cut(s)	672, 1119, 1264
BspHI	TCATGA	1 cut(s)	1286
BspLI	GGNNCC	4 cut(s)	210, 327, 385, 1203
BspPI	GGATC	5 cut(s)	67, 95, 320, 333, 773
BspTNI	GGTCTC	1 cut(s)	982
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	608, 1113, 1205
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	5 cut(s)	329, 756, 786, 868, 1158
BssNAI	GTATAC	1 cut(s)	1232
BssSI	CACGAG	1 cut(s)	1026
BssT1I	CCWWGG	3 cut(s)	329, 786, 868
Bst1107I	GTATAC	1 cut(s)	1232
Bst2BI	CACGAG	1 cut(s)	1026
Bst2UI	CCWGG	1 cut(s)	1096
Bst4CI	ACNGT	3 cut(s)	168, 750, 1150
BstC8I	GCNNGC	4 cut(s)	174, 783, 943, 947
BstDEI	CTNAG	7 cut(s)	183, 294, 588, 680, 826, 1106, 1251
BstDSI	CCRYGG	1 cut(s)	868
BstF5I	GGATG	4 cut(s)	864, 900, 1003, 1252
BstHHI	GCGC	1 cut(s)	1242
BstMAI	GTCTC	2 cut(s)	532, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 475
BstNI	CCWGG	1 cut(s)	1096
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	133, 1094
BstV1I	GCAGC	2 cut(s)	589, 936
BstX2I	RGATCY	3 cut(s)	72, 325, 765
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	3 cut(s)	72, 325, 765
BstZ17I	GTATAC	1 cut(s)	1232
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	8 cut(s)	133, 430, 755, 945, 1099, 1111, 1169, 1256
BtgI	CCRYGG	1 cut(s)	868
BtsCI	GGATG	4 cut(s)	864, 900, 1003, 1252
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	5 cut(s)	164, 400, 444, 746, 1120
Cac8I	GCNNGC	4 cut(s)	174, 783, 943, 947
CaiI	CAGNNNCTG	2 cut(s)	632, 1063
CciI	TCATGA	1 cut(s)	1286
CfoI	GCGC	1 cut(s)	1242
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	96, 132, 208, 1110
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	1128, 1151
CviAII	CATG	6 cut(s)	15, 173, 869, 974, 1088, 1287
CviQI	GTAC	2 cut(s)	1128, 1151
DdeI	CTNAG	7 cut(s)	183, 294, 588, 680, 826, 1106, 1251
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	428, 753
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	329, 786, 868
Eco147I	AGGCCT	1 cut(s)	1256
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	982
Eco47I	GGWCC	2 cut(s)	96, 208
Eco57I	CTGAAG	2 cut(s)	491, 794
Eco88I	CYCGRG	1 cut(s)	1157
EcoRII	CCWGG	1 cut(s)	1094
EcoT14I	CCWWGG	3 cut(s)	329, 786, 868
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	329, 786, 868
FaeI	CATG	6 cut(s)	18, 176, 872, 977, 1091, 1290
FaqI	GGGAC	1 cut(s)	1140
FatI	CATG	6 cut(s)	14, 172, 868, 973, 1087, 1286
FauI	CCCGC	2 cut(s)	219, 830
FbaI	TGATCA	1 cut(s)	1054
FblI	GTMKAC	1 cut(s)	1231
Fnu4HI	GCNGC	4 cut(s)	428, 576, 603, 950
FokI	GGATG	4 cut(s)	851, 907, 1010, 1259
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	428, 576, 603, 950
FspBI	CTAG	4 cut(s)	377, 579, 962, 1235
GlaI	GCGC	1 cut(s)	1241
GluI	GCNGC	4 cut(s)	428, 576, 603, 950
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	8 cut(s)	133, 430, 755, 945, 1099, 1111, 1169, 1256
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	1242
Hin1II	CATG	6 cut(s)	18, 176, 872, 977, 1091, 1290
Hin6I	GCGC	1 cut(s)	1240
HinP1I	GCGC	1 cut(s)	1240
HincII	GTYRAC	2 cut(s)	54, 979
HindII	GTYRAC	2 cut(s)	54, 979
HinfI	GANTC	3 cut(s)	542, 584, 1283
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	2 cut(s)	99, 166
Hpy166II	GTNNAC	3 cut(s)	54, 979, 1232
Hpy188I	TCNGA	9 cut(s)	100, 325, 532, 541, 681, 813, 876, 884, 894
Hpy188III	TCNNGA	8 cut(s)	206, 413, 693, 962, 985, 1052, 1157, 1287
Hpy8I	GTNNAC	3 cut(s)	54, 979, 1232
Hpy99I	CGWCG	1 cut(s)	1230
HpyAV	CCTTC	4 cut(s)	30, 114, 592, 756
HpyCH4III	ACNGT	3 cut(s)	168, 750, 1150
HpyCH4IV	ACGT	2 cut(s)	1153, 1228
HpyCH4V	TGCA	3 cut(s)	176, 449, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 475
HpyF3I	CTNAG	7 cut(s)	183, 294, 588, 680, 826, 1106, 1251
HpySE526I	ACGT	2 cut(s)	1153, 1228
Hsp92II	CATG	6 cut(s)	18, 176, 872, 977, 1091, 1290
HspAI	GCGC	1 cut(s)	1240
Ksp22I	TGATCA	1 cut(s)	1054
LmnI	GCTCC	3 cut(s)	229, 313, 610
Lsp1109I	GCAGC	2 cut(s)	589, 936
LweI	GCATC	4 cut(s)	361, 458, 885, 1237
MaeI	CTAG	4 cut(s)	377, 579, 962, 1235
MaeII	ACGT	2 cut(s)	1153, 1228
MaeIII	GTNAC	6 cut(s)	86, 154, 442, 581, 1090, 1207
MboII	GAAGA	8 cut(s)	54, 72, 484, 760, 800, 871, 1226, 1229
MflI	RGATCY	3 cut(s)	72, 325, 765
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	9 cut(s)	239, 276, 286, 345, 480, 535, 613, 644, 911
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	4 cut(s)	48, 54, 171, 982
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	2 cut(s)	612, 1047
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 1096
Mva1269I	GAATGC	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	1096
MwoI	GCNNNNNNNGC	2 cut(s)	436, 475
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	868
NlaIII	CATG	6 cut(s)	18, 176, 872, 977, 1091, 1290
NlaIV	GGNNCC	4 cut(s)	210, 327, 385, 1203
NmeAIII	GCCGAG	1 cut(s)	781
NmuCI	GTSAC	4 cut(s)	86, 154, 442, 581
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	1286
PceI	AGGCCT	1 cut(s)	1256
PcsI	WCGNNNNNNNCGW	1 cut(s)	898
PctI	GAATGC	1 cut(s)	804
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	542, 1283
PkrI	GCNGC	4 cut(s)	429, 577, 604, 951
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	1094
PspGI	CCWGG	1 cut(s)	1094
PspN4I	GGNNCC	4 cut(s)	210, 327, 385, 1203
PspPI	GGNCC	4 cut(s)	96, 132, 208, 1110
PstNI	CAGNNNCTG	2 cut(s)	632, 1063
PsuI	RGATCY	3 cut(s)	72, 325, 765
RsaI	GTAC	2 cut(s)	1129, 1152
RsaNI	GTAC	2 cut(s)	1128, 1151
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	612, 1047
SatI	GCNGC	4 cut(s)	428, 576, 603, 950
Sau96I	GGNCC	4 cut(s)	96, 132, 208, 1110
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	135, 1096
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	4 cut(s)	361, 458, 885, 1237
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	96, 208
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	985
SmoI	CTYRAG	1 cut(s)	985
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	9 cut(s)	239, 276, 286, 345, 480, 535, 613, 644, 911
SseBI	AGGCCT	1 cut(s)	1256
SsiI	CCGC	5 cut(s)	212, 427, 575, 823, 1015
SspMI	CTAG	4 cut(s)	377, 579, 962, 1235
StuI	AGGCCT	1 cut(s)	1256
StyD4I	CCNGG	2 cut(s)	133, 1094
StyI	CCWWGG	3 cut(s)	329, 786, 868
TaaI	ACNGT	3 cut(s)	168, 750, 1150
TaiI	ACGT	2 cut(s)	1156, 1231
TaqI	TCGA	2 cut(s)	8, 969
TasI	AATT	9 cut(s)	239, 276, 286, 345, 480, 535, 613, 644, 911
TatI	WGTACW	1 cut(s)	1127
TauI	GCSGC	2 cut(s)	430, 578
TfiI	GAWTC	2 cut(s)	542, 1283
Tru1I	TTAA	2 cut(s)	612, 1047
Tru9I	TTAA	2 cut(s)	612, 1047
TscAI	CASTG	5 cut(s)	171, 407, 451, 753, 1120
TseFI	GTSAC	4 cut(s)	86, 154, 442, 581
TseI	GCWGC	2 cut(s)	602, 949
Tsp45I	GTSAC	4 cut(s)	86, 154, 442, 581
TspDTI	ATGAA	2 cut(s)	556, 1254
TspGWI	ACGGA	1 cut(s)	1207
TspRI	CASTG	5 cut(s)	171, 407, 451, 753, 1120
VpaK11BI	GGWCC	2 cut(s)	96, 208
XbaI	TCTAGA	1 cut(s)	961
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	1231
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	4 cut(s)	377, 579, 962, 1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.