Rw6G022320

Acyl-coenzyme A thioesterase 9

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
44144086 .. 44147596
3511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022320.1

Sequence Viewer

Length: 1311 bp
ATGGACCCAAACTCATCTCCTTCCAATTCCAACACCACCATTCCGGTAGTGGCAACCCTCCCTGTTTATGGGTCGGACTCTTTGACCCGGAAGCCCATCAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACCAAGGCACTGTGGGAAGCGAGGTCTCACATGTTCGAGAGGCTGTTGGACCCACCAGTGGACGCTCCTCCGCAGAGCGAATTGCTGAACAAGACTCCGTCTCAGAGCAGGACTACAATTCTGTACAATTTCTCTACTGATTTTATACTGAGGGAGCAGTACAGGGATCCTTGGAATGAGGTCAGAATTGGGAAACTGCTTGAAGACCTTGATGCTTTAGCTGGAACCATTTCCGTCAAGCACTGCTATGCTGTTGATACCACAACGAGGCCACTCTTGCTGGTCACTGCATCTGTTGACAAGATTGTCTTGAAGAAGCCGATTAGTGTTGACATTGACTTGAAAATAGTTGGTGCTGTCATATGGGTGGGGCGATCATCTATTGAGATCCAACTAGAAGTTACTCAATCCACAAAAGGCTGTGACAATTCCGACTCATTAGCCCTTTCAGCCAACTTCATATTTGTGGCTCGTGACTCTAAGACTGGGAAGGCTGCTCCAGTTAATAGGCTCTTACCAGAAACTGAAAGAGAACAATTGCTTTTCAAGGAAGCAGAAACCAGAAATACTCTGAGGAAGAGAACGAAAGGAGGAGAAAAAAGGGAGTTTGAGAATGGAGAAGTAAATAGACTTGAAAGCCTGTTGGCGGAGGGAAGGATCTTTTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCTGAGGGATACCAGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTTGGAGGATTTTTAATGCACAGAGCATTTGAATTGGCTTTCTCCACAGCTTATGCTTTTGCTGGCCTGGTGCCTTGCTTTCTAGAAGTCGATCACGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGTTTCAAATCTTGTGTTCTCTACACAGAAGTTAATCCAGATCACCCTCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCTGAGCTCAGGTCCAGTGAGGTGTCAAATACATTTTATTTTACTTTCACCGTACGTCCCGAGGCAAAGGCCACAAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTGGAGCGCAAGGATGCTCAGGTCTTGCTTTCATCAACAGTTGTGAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

48.96

Weight (kDa)

6.49

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 973
AccI GTMKAC 1 cut(s) 1255
AciI CCGC 2 cut(s) 203, 779
AclWI GGATC 5 cut(s) 293, 306, 514, 797, 908
AfaI GTAC 3 cut(s) 257, 293, 1176
AfiI CCNNNNNNNGG 5 cut(s) 68, 127, 190, 399, 778
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 8 cut(s) 335, 445, 475, 679, 767, 935, 1045, 1100
AjnI CCWGG 2 cut(s) 969, 1118
AluBI AGCT 5 cut(s) 102, 353, 849, 953, 1129
AluI AGCT 5 cut(s) 102, 353, 849, 953, 1129
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 3 cut(s) 162, 237, 1006
AlwI GGATC 5 cut(s) 293, 306, 514, 797, 908
AlwNI CAGNNNCTG 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 5 cut(s) 107, 401, 967, 1121, 1191
ApeKI GCWGC 1 cut(s) 626
Asp700I GAANNNNTTC 1 cut(s) 361
AspLEI GCGC 1 cut(s) 1266
AspS9I GGNCC 4 cut(s) 4, 108, 181, 1134
AsuC2I CCSGG 2 cut(s) 88, 111
AsuHPI GGTGA 3 cut(s) 142, 1073, 1162
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 3 cut(s) 4, 181, 1134
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 1131
BauI CACGAG 1 cut(s) 603
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 1 cut(s) 613
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 971, 1120
BciVI GTATCC 2 cut(s) 835, 1206
BcnI CCSGG 2 cut(s) 88, 111
BcoDI GTCTC 3 cut(s) 162, 237, 1006
BfaI CTAG 2 cut(s) 527, 986
BfuI GTATCC 2 cut(s) 835, 1206
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
Bme1390I CCNGG 4 cut(s) 88, 111, 971, 1120
Bme18I GGWCC 3 cut(s) 4, 181, 1134
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 4 cut(s) 4, 108, 181, 1134
BmiI GGNNCC 6 cut(s) 6, 183, 300, 358, 975, 1227
BmrFI CCNGG 4 cut(s) 88, 111, 971, 1120
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 3 cut(s) 334, 431, 1261
BmuI ACTGGG 1 cut(s) 627
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 615, 1280
Bpu10I CCTNAGC 3 cut(s) 1125, 1130, 1275
BpuEI CTTGAG 1 cut(s) 1030
BpuMI CCSGG 2 cut(s) 88, 111
BsaI GGTCTC 2 cut(s) 162, 1006
BsaJI CCNNGG 5 cut(s) 135, 302, 810, 892, 1182
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 127, 190, 399, 778
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 5 cut(s) 188, 622, 632, 1137, 1263
BseBI CCWGG 2 cut(s) 971, 1120
BseDI CCNNGG 5 cut(s) 135, 302, 810, 892, 1182
BseGI GGATG 3 cut(s) 888, 1027, 1276
BseLI CCNNNNNNNGG 5 cut(s) 68, 127, 190, 399, 778
BseMII CTCAG 7 cut(s) 248, 272, 695, 827, 1116, 1144, 1289
BseNI ACTGG 5 cut(s) 188, 622, 632, 1137, 1263
BseRI GAGGAG 2 cut(s) 189, 738
BseXI GCAGC 1 cut(s) 613
BshFI GGCC 5 cut(s) 109, 403, 969, 1123, 1193
BshNI GGYRCC 1 cut(s) 973
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 4 cut(s) 44, 88, 111, 128
BsiWI CGTACG 1 cut(s) 1174
BslFI GGGAC 1 cut(s) 1164
BslI CCNNNNNNNGG 5 cut(s) 68, 127, 190, 399, 778
BsmAI GTCTC 3 cut(s) 162, 237, 1006
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 5 cut(s) 109, 403, 969, 1123, 1193
Bso31I GGTCTC 2 cut(s) 162, 1006
BsoBI CYCGRG 1 cut(s) 1181
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp1407I TGTACA 1 cut(s) 255
Bsp143I GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
Bsp19I CCATGG 1 cut(s) 892
BspACI CCGC 2 cut(s) 203, 779
BspANI GGCC 5 cut(s) 109, 403, 969, 1123, 1193
BspCNI CTCAG 7 cut(s) 247, 273, 696, 828, 1117, 1143, 1288
BspLI GGNNCC 6 cut(s) 6, 183, 300, 358, 975, 1227
BspPI GGATC 5 cut(s) 293, 306, 514, 797, 908
BspT107I GGYRCC 1 cut(s) 973
BspTNI GGTCTC 2 cut(s) 162, 1006
BsrFI RCCGGY 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 255
BsrI ACTGG 5 cut(s) 188, 622, 632, 1137, 1263
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 5 cut(s) 135, 302, 810, 892, 1182
BssMI GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
BssNAI GTATAC 1 cut(s) 1256
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 4 cut(s) 135, 302, 810, 892
Bst1107I GTATAC 1 cut(s) 1256
Bst2BI CACGAG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 971, 1120
Bst4CI ACNGT 3 cut(s) 144, 1174, 1297
Bst6I CTCTTC 1 cut(s) 704
BstAUI TGTACA 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 807, 967
BstDEI CTNAG 9 cut(s) 234, 281, 612, 704, 836, 850, 1125, 1130, 1275
BstDSI CCRYGG 1 cut(s) 892
BstEII GGTNACC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 888, 1027, 1276
BstHHI GCGC 1 cut(s) 1266
BstKTI GATC 8 cut(s) 301, 509, 522, 792, 867, 903, 997, 1081
BstMAI GTCTC 3 cut(s) 162, 237, 1006
BstMBI GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
BstMWI GCNNNNNNNGC 2 cut(s) 409, 581
BstNI CCWGG 2 cut(s) 971, 1120
BstNSI RCATGY 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 4 cut(s) 86, 109, 969, 1118
BstV1I GCAGC 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 4 cut(s) 298, 519, 789, 900
BstYI RGATCY 4 cut(s) 298, 519, 789, 900
BstZ17I GTATAC 1 cut(s) 1256
BsuI GTATCC 2 cut(s) 835, 1206
BsuRI GGCC 5 cut(s) 109, 403, 969, 1123, 1193
BtgI CCRYGG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 888, 1027, 1276
BtsI GCAGTG 2 cut(s) 373, 417
BtsIMutI CAGTG 5 cut(s) 140, 195, 373, 417, 1144
Cac8I GCNNGC 2 cut(s) 807, 967
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 1266
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 4, 108, 181, 1134
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 256, 292, 1175
CviAII CATG 3 cut(s) 163, 893, 1112
CviQI GTAC 3 cut(s) 256, 292, 1175
DdeI CTNAG 9 cut(s) 234, 281, 612, 704, 836, 850, 1125, 1130, 1275
DpnI GATC 8 cut(s) 300, 508, 521, 791, 866, 902, 996, 1080
DpnII GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 1 cut(s) 794
Ecl136II GAGCTC 1 cut(s) 1129
Eco130I CCWWGG 4 cut(s) 135, 302, 810, 892
Eco147I AGGCCT 1 cut(s) 1123
Eco24I GRGCYC 1 cut(s) 1131
Eco31I GGTCTC 2 cut(s) 162, 1006
Eco47I GGWCC 3 cut(s) 4, 181, 1134
Eco53kI GAGCTC 1 cut(s) 1129
Eco88I CYCGRG 1 cut(s) 1181
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 1129
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 969, 1118
EcoT14I CCWWGG 4 cut(s) 135, 302, 810, 892
EcoT38I GRGCYC 1 cut(s) 1131
ErhI CCWWGG 4 cut(s) 135, 302, 810, 892
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 3 cut(s) 166, 896, 1115
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 1164
FatI CATG 3 cut(s) 162, 892, 1111
FauNDI CATATG 1 cut(s) 494
FblI GTMKAC 1 cut(s) 1255
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 3 cut(s) 875, 1034, 1283
FriOI GRGCYC 1 cut(s) 1131
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 2 cut(s) 527, 986
GlaI GCGC 1 cut(s) 1265
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 2 cut(s) 615, 1280
HaeIII GGCC 5 cut(s) 109, 403, 969, 1123, 1193
HapII CCGG 4 cut(s) 44, 88, 111, 128
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 1266
Hin1II CATG 3 cut(s) 166, 896, 1115
Hin6I GCGC 1 cut(s) 1264
HinP1I GCGC 1 cut(s) 1264
HincII GTYRAC 3 cut(s) 430, 463, 1003
HindII GTYRAC 3 cut(s) 430, 463, 1003
HinfI GANTC 4 cut(s) 77, 226, 566, 608
HpaII CCGG 4 cut(s) 44, 88, 111, 128
HphI GGTGA 3 cut(s) 142, 1073, 1162
Hpy166II GTNNAC 5 cut(s) 193, 430, 463, 1003, 1256
Hpy188I TCNGA 8 cut(s) 76, 237, 317, 565, 705, 837, 900, 1089
Hpy188III TCNNGA 7 cut(s) 169, 442, 605, 986, 1009, 1076, 1181
Hpy8I GTNNAC 5 cut(s) 193, 430, 463, 1003, 1256
Hpy99I CGWCG 1 cut(s) 1254
HpyAV CCTTC 3 cut(s) 30, 616, 780
HpyCH4III ACNGT 3 cut(s) 144, 1174, 1297
HpyCH4IV ACGT 3 cut(s) 999, 1177, 1252
HpyCH4V TGCA 2 cut(s) 422, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 581
HpyF3I CTNAG 9 cut(s) 234, 281, 612, 704, 836, 850, 1125, 1130, 1275
HpySE526I ACGT 3 cut(s) 999, 1177, 1252
Hsp92II CATG 3 cut(s) 166, 896, 1115
HspAI GCGC 1 cut(s) 1264
Kzo9I GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
LmnI GCTCC 4 cut(s) 202, 286, 634, 1261
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 3 cut(s) 334, 431, 1261
MaeI CTAG 2 cut(s) 527, 986
MaeII ACGT 3 cut(s) 999, 1177, 1252
MaeIII GTNAC 6 cut(s) 130, 415, 532, 554, 605, 1114
MalI GATC 8 cut(s) 300, 508, 521, 791, 866, 902, 996, 1080
MboI GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
MboII GAAGA 6 cut(s) 347, 457, 721, 824, 1250, 1253
MfeI CAATTG 1 cut(s) 668
MflI RGATCY 4 cut(s) 298, 519, 789, 900
MhlI GDGCHC 1 cut(s) 1131
MluCI AATT 8 cut(s) 25, 212, 249, 259, 318, 559, 668, 935
MlyI GAGTC 4 cut(s) 71, 220, 560, 602
MmeI TCCRAC 7 cut(s) 54, 54, 159, 547, 588, 878, 1006
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 3 cut(s) 636, 917, 1071
MslI CAYNNNNRTG 3 cut(s) 378, 497, 596
MspI CCGG 4 cut(s) 44, 88, 111, 128
MspR9I CCNGG 4 cut(s) 88, 111, 971, 1120
MunI CAATTG 1 cut(s) 668
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 2 cut(s) 971, 1120
MwoI GCNNNNNNNGC 2 cut(s) 409, 581
NciI CCSGG 2 cut(s) 88, 111
NcoI CCATGG 1 cut(s) 892
NdeI CATATG 1 cut(s) 494
NdeII GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
NlaIII CATG 3 cut(s) 166, 896, 1115
NlaIV GGNNCC 6 cut(s) 6, 183, 300, 358, 975, 1227
NmuCI GTSAC 4 cut(s) 130, 415, 554, 605
NspI RCATGY 1 cut(s) 166
PceI AGGCCT 1 cut(s) 1123
PciI ACATGT 1 cut(s) 162
PctI GAATGC 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 361
Pfl23II CGTACG 1 cut(s) 1174
PflFI GACNNNGTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 628
PleI GAGTC 4 cut(s) 71, 220, 560, 602
PpsI GAGTC 4 cut(s) 71, 220, 560, 602
PscI ACATGT 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 1131
Psp6I CCWGG 2 cut(s) 969, 1118
PspEI GGTNACC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 969, 1118
PspLI CGTACG 1 cut(s) 1174
PspN4I GGNNCC 6 cut(s) 6, 183, 300, 358, 975, 1227
PspPI GGNCC 4 cut(s) 4, 108, 181, 1134
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 4 cut(s) 298, 519, 789, 900
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 3 cut(s) 257, 293, 1176
RsaNI GTAC 3 cut(s) 256, 292, 1175
RseI CAYNNNNRTG 3 cut(s) 378, 497, 596
SacI GAGCTC 1 cut(s) 1131
SaqAI TTAA 3 cut(s) 636, 917, 1071
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 8 cut(s) 298, 506, 519, 789, 864, 900, 994, 1078
Sau96I GGNCC 4 cut(s) 4, 108, 181, 1134
SchI GAGTC 4 cut(s) 71, 220, 560, 602
ScrFI CCNGG 4 cut(s) 88, 111, 971, 1120
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 3 cut(s) 334, 431, 1261
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 3 cut(s) 4, 181, 1134
SmiMI CAYNNNNRTG 3 cut(s) 378, 497, 596
SmlI CTYRAG 1 cut(s) 1009
SmoI CTYRAG 1 cut(s) 1009
Sse9I AATT 8 cut(s) 25, 212, 249, 259, 318, 559, 668, 935
SseBI AGGCCT 1 cut(s) 1123
SsiI CCGC 2 cut(s) 203, 779
SspMI CTAG 2 cut(s) 527, 986
SstI GAGCTC 1 cut(s) 1131
StuI AGGCCT 1 cut(s) 1123
StyD4I CCNGG 4 cut(s) 86, 109, 969, 1118
StyI CCWWGG 4 cut(s) 135, 302, 810, 892
TaaI ACNGT 3 cut(s) 144, 1174, 1297
TaiI ACGT 3 cut(s) 1002, 1180, 1255
TaqI TCGA 2 cut(s) 168, 993
TasI AATT 8 cut(s) 25, 212, 249, 259, 318, 559, 668, 935
TatI WGTACW 2 cut(s) 255, 291
Tru1I TTAA 3 cut(s) 636, 917, 1071
Tru9I TTAA 3 cut(s) 636, 917, 1071
TscAI CASTG 5 cut(s) 147, 195, 380, 424, 1144
TseFI GTSAC 4 cut(s) 130, 415, 554, 605
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 4 cut(s) 130, 415, 554, 605
TspDTI ATGAA 2 cut(s) 580, 1278
TspGWI ACGGA 3 cut(s) 219, 355, 1231
TspRI CASTG 5 cut(s) 147, 195, 380, 424, 1144
Tth111I GACNNNGTC 1 cut(s) 229
VpaK11BI GGWCC 3 cut(s) 4, 181, 1134
XbaI TCTAGA 1 cut(s) 985
XceI RCATGY 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 1255
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 2 cut(s) 527, 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.