Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

43231758 .. 43234432

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG259900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGCTCGACTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCTTATCTTCTTTGGAGATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAAAGGCACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCTCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTAAGGATTACACATTGAGGGAGCAGTATTCGGATCCTTGGAATGACGATAGAATTGGGAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACTCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAATTGACCTGAAAATAGTTGGTGCTGTAATATGGGTGGGGAGCTCAGCTATTGAGATCCAACTAGAAGTCACTCAATCCATAGAAGAAGTCTCAGACAATTCGGATTCTTCAGTCCTTTCAGCCAACTTCATATTTGTGGCTGGTGACTCTAAGAATGGGAAGGCTGCTCCAGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTGATCCTGATCAGCCCCTGATTACTATTGAAATTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGGTGTCAAATACATTTTATTTCACTTTCACAGTACGTCCCGAGGCAAAGGCCACGAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

298

Amino Acids

32.93

Weight (kDa)

5.35

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	212, 427, 685
AclWI	GGATC	6 cut(s)	67, 95, 320, 333, 541, 713
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	2 cut(s)	491, 585
AfaI	GTAC	1 cut(s)	822
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
AgsI	TTSAA	4 cut(s)	458, 491, 691, 746
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	764
AluBI	AGCT	4 cut(s)	126, 380, 534, 539
AluI	AGCT	4 cut(s)	126, 380, 534, 539
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	6 cut(s)	67, 95, 320, 333, 541, 713
AlwNI	CAGNNNCTG	1 cut(s)	733
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	4 cut(s)	131, 428, 767, 837
ApeKI	GCWGC	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	4 cut(s)	96, 132, 208, 780
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	99, 166, 647
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	3 cut(s)	96, 208, 780
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	8, 536
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	766
BciVI	GTATCC	1 cut(s)	852
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	377, 554
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	2 cut(s)	428, 657
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	2 cut(s)	429, 658
Bme1390I	CCNGG	2 cut(s)	135, 766
Bme18I	GGWCC	3 cut(s)	96, 208, 780
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	4 cut(s)	96, 132, 208, 780
BmiI	GGNNCC	4 cut(s)	210, 327, 385, 873
BmrFI	CCNGG	2 cut(s)	135, 766
BmsI	GCATC	2 cut(s)	361, 458
BpmI	CTGGAG	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	2 cut(s)	329, 828
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	662, 783
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	2 cut(s)	329, 828
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BseMII	CTCAG	3 cut(s)	549, 597, 790
BseNI	ACTGG	2 cut(s)	662, 783
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	643
BshFI	GGCC	4 cut(s)	133, 430, 769, 839
BsiHKAI	GWGCWC	1 cut(s)	536
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslFI	GGGAC	1 cut(s)	810
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	810
BsnI	GGCC	4 cut(s)	133, 430, 769, 839
BsoBI	CYCGRG	1 cut(s)	827
Bsp1286I	GDGCHC	2 cut(s)	8, 536
Bsp143I	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	3 cut(s)	212, 427, 685
BspANI	GGCC	4 cut(s)	133, 430, 769, 839
BspCNI	CTCAG	3 cut(s)	548, 596, 789
BspLI	GGNNCC	4 cut(s)	210, 327, 385, 873
BspPI	GGATC	6 cut(s)	67, 95, 320, 333, 541, 713
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	662, 783
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	329, 828
BssMI	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	2 cut(s)	168, 820
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	6 cut(s)	183, 294, 535, 583, 642, 776
BstF5I	GGATG	1 cut(s)	673
BstKTI	GATC	7 cut(s)	75, 103, 328, 412, 549, 721, 727
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 475
BstNI	CCWGG	1 cut(s)	766
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	133, 764
BstV1I	GCAGC	1 cut(s)	643
BstX2I	RGATCY	3 cut(s)	72, 325, 546
BstYI	RGATCY	3 cut(s)	72, 325, 546
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	4 cut(s)	133, 430, 769, 839
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	5 cut(s)	164, 400, 444, 669, 790
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	733
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	96, 132, 208, 780
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	821
CviAII	CATG	4 cut(s)	15, 173, 758, 894
CviQI	GTAC	1 cut(s)	821
DdeI	CTNAG	6 cut(s)	183, 294, 535, 583, 642, 776
DpnI	GATC	7 cut(s)	74, 102, 327, 411, 548, 720, 726
DpnII	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	428
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	8, 536
Eco47I	GGWCC	3 cut(s)	96, 208, 780
Eco53kI	GAGCTC	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	491, 585
Eco88I	CYCGRG	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	8, 536
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	4 cut(s)	18, 176, 761, 897
FaiI	YATR	9 cut(s)	16, 174, 285, 408, 523, 572, 623, 759, 895
FaqI	GGGAC	1 cut(s)	810
FatI	CATG	4 cut(s)	14, 172, 757, 893
FauI	CCCGC	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	428, 657
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	8, 536
Fsp4HI	GCNGC	2 cut(s)	428, 657
FspBI	CTAG	2 cut(s)	377, 554
GluI	GCNGC	2 cut(s)	428, 657
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	4 cut(s)	133, 430, 769, 839
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	18, 176, 761, 897
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	596, 638
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	3 cut(s)	99, 166, 647
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	100, 325, 586, 595
Hpy188III	TCNNGA	4 cut(s)	206, 413, 722, 827
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	30, 114, 646
HpyCH4III	ACNGT	2 cut(s)	168, 820
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	2 cut(s)	176, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 475
HpyF3I	CTNAG	6 cut(s)	183, 294, 535, 583, 642, 776
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	4 cut(s)	18, 176, 761, 897
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
LmnI	GCTCC	4 cut(s)	229, 313, 531, 664
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	2 cut(s)	361, 458
MaeI	CTAG	2 cut(s)	377, 554
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	6 cut(s)	86, 154, 442, 559, 635, 760
MalI	GATC	7 cut(s)	74, 102, 327, 411, 548, 720, 726
MboI	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
MboII	GAAGA	6 cut(s)	54, 72, 484, 587, 591, 896
MflI	RGATCY	3 cut(s)	72, 325, 546
MhlI	GDGCHC	2 cut(s)	8, 536
MluCI	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 747
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	5 cut(s)	48, 54, 171, 574, 652
MnlI	CCTC	6 cut(s)	189, 237, 268, 303, 781, 823
MroXI	GAANNNNTTC	1 cut(s)	388
MslI	CAYNNNNRTG	2 cut(s)	405, 626
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 766
MvaI	CCWGG	1 cut(s)	766
MwoI	GCNNNNNNNGC	2 cut(s)	436, 475
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
NlaIII	CATG	4 cut(s)	18, 176, 761, 897
NlaIV	GGNNCC	4 cut(s)	210, 327, 385, 873
NmuCI	GTSAC	5 cut(s)	86, 154, 442, 559, 635
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	429, 658
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	4 cut(s)	210, 327, 385, 873
PspPI	GGNCC	4 cut(s)	96, 132, 208, 780
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	3 cut(s)	72, 325, 546
RsaI	GTAC	1 cut(s)	822
RsaNI	GTAC	1 cut(s)	821
RseI	CAYNNNNRTG	2 cut(s)	405, 626
SacI	GAGCTC	1 cut(s)	536
SatI	GCNGC	2 cut(s)	428, 657
Sau3AI	GATC	7 cut(s)	72, 100, 325, 409, 546, 718, 724
Sau96I	GGNCC	4 cut(s)	96, 132, 208, 780
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	2 cut(s)	135, 766
SduI	GDGCHC	2 cut(s)	8, 536
SfaNI	GCATC	2 cut(s)	361, 458
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	96, 208, 780
SmiMI	CAYNNNNRTG	2 cut(s)	405, 626
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 747
SsiI	CCGC	3 cut(s)	212, 427, 685
SspMI	CTAG	2 cut(s)	377, 554
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	133, 764
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	168, 820
TaiI	ACGT	1 cut(s)	826
TaqI	TCGA	1 cut(s)	8
TasI	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 747
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	596
TscAI	CASTG	5 cut(s)	171, 407, 451, 669, 790
TseFI	GTSAC	5 cut(s)	86, 154, 442, 559, 635
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	5 cut(s)	86, 154, 442, 559, 635
TspDTI	ATGAA	1 cut(s)	610
TspGWI	ACGGA	1 cut(s)	877
TspRI	CASTG	5 cut(s)	171, 407, 451, 669, 790
VpaK11BI	GGWCC	3 cut(s)	96, 208, 780
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	377, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.