Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Forward (+)

23872548 .. 23874903

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012920

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGCTCGACTTCATGTCCTTCCAACTCCAACACCACCATTCCGATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGATTAAGGTACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCTCCACAGATCGAATTGCTCAACAAAACTCCCTCGCAAAGCAAGACTACGATTCTCTATAATTTGTCTAAAGATTATGCATTGAGCGAGCAGTATTCGGATCCTTGGAATGAGGTTAGAATTGGGAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTTGACCACTGCTATGATCTTGACAGTACAATGCGGCCACTCTTGCTGGTCGCTGCAGCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAAGACCTGAAAATAGTTGGCGCTGTAATATGGAAGTCTCTGACAATTCGGATTCTTTAGTCCTTTCAGCCAACTTCATATCTGTGGCTAGTGACTCTAAGAATGGGAAGGCTGATCCAGTTAATTGGCTCTTACCAGAAACTGAAAGAGAAAAATTACTTTTCAAGGAAGCAGCAGTAAGAAATAATCTGAGGAAAAGATCGAGAGGAGGACAAAAAAGTTTATTTGAGAATGGAGAAGTAAATAGACTTGAAACACTGTTGGCCGAGGGAAGGATCTTCTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCAGAGGGATACCCGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTCGGAGGGTTTCTGATGCACCGAGCTTTTGAAATGGCTTTCTCCACAGCTTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTGATCCTGATCAGCCCTTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGGTTTCATATACATTTTATTTCACTTTCACAGTACGTCCCGAGGCAAAGGCCACGAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTAGAGCGTAGGGATGCTCAGGCCTTGCTTTCATCAACAAATAAACACGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

421

Amino Acids

47.45

Weight (kDa)

6.53

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1204
AciI	CCGC	4 cut(s)	185, 400, 796, 988
AclWI	GGATC	8 cut(s)	40, 68, 293, 306, 572, 746, 857, 1016
AcoI	YGGCCR	2 cut(s)	401, 726
AcuI	CTGAAG	2 cut(s)	464, 767
AfaI	GTAC	3 cut(s)	138, 394, 1125
AfiI	CCNNNNNNNGG	5 cut(s)	55, 56, 124, 190, 735
AgsI	TTSAA	7 cut(s)	431, 464, 628, 716, 884, 994, 1049
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	1067
AluBI	AGCT	5 cut(s)	99, 353, 425, 878, 902
AluI	AGCT	5 cut(s)	99, 353, 425, 878, 902
Alw26I	GTCTC	2 cut(s)	505, 955
AlwI	GGATC	8 cut(s)	40, 68, 293, 306, 572, 746, 857, 1016
AlwNI	CAGNNNCTG	1 cut(s)	605
Ama87I	CYCGRG	1 cut(s)	1130
AoxI	GGCC	7 cut(s)	104, 401, 726, 916, 1070, 1140, 1227
ApeKI	GCWGC	4 cut(s)	419, 422, 635, 922
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	4 cut(s)	69, 105, 181, 1083
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	72, 139
AvaI	CYCGRG	1 cut(s)	1130
AvaII	GGWCC	3 cut(s)	69, 181, 1083
BamHI	GGATCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	406, 434, 647, 909
BccI	CCATC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	1069
BciVI	GTATCC	2 cut(s)	784, 1155
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	505, 955
BfaI	CTAG	4 cut(s)	350, 552, 935, 1208
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	487
BfuI	GTATCC	2 cut(s)	784, 1155
BisI	GCNGC	5 cut(s)	401, 420, 423, 636, 923
BlsI	GCNGC	5 cut(s)	402, 421, 424, 637, 924
Bme1390I	CCNGG	2 cut(s)	108, 1069
Bme18I	GGWCC	3 cut(s)	69, 181, 1083
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	1130
BmgT120I	GGNCC	4 cut(s)	69, 105, 181, 1083
BmiI	GGNNCC	4 cut(s)	183, 300, 358, 1176
BmrFI	CCNGG	2 cut(s)	108, 1069
BmsI	GCATC	3 cut(s)	334, 858, 1210
Bpu10I	CCTNAGC	1 cut(s)	1224
BpuEI	CTTGAG	1 cut(s)	979
BpuMI	CCSGG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	5 cut(s)	302, 729, 759, 841, 1131
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 56, 124, 190, 735
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	581, 1086
Bse8I	GATNNNNATC	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	1069
BseDI	CCNNGG	5 cut(s)	302, 729, 759, 841, 1131
BseGI	GGATG	3 cut(s)	837, 976, 1225
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	5 cut(s)	55, 56, 124, 190, 735
BseMII	CTCAG	3 cut(s)	644, 1093, 1238
BseNI	ACTGG	2 cut(s)	581, 1086
BseRI	GAGGAG	2 cut(s)	189, 684
BseXI	GCAGC	4 cut(s)	406, 434, 647, 909
BshFI	GGCC	7 cut(s)	106, 403, 728, 918, 1072, 1142, 1229
BsiHKCI	CYCGRG	1 cut(s)	1130
BsiSI	CCGG	2 cut(s)	108, 125
BslFI	GGGAC	1 cut(s)	1113
BslI	CCNNNNNNNGG	5 cut(s)	55, 56, 124, 190, 735
BsmAI	GTCTC	2 cut(s)	505, 955
BsmFI	GGGAC	1 cut(s)	1113
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	7 cut(s)	106, 403, 728, 918, 1072, 1142, 1229
Bso31I	GGTCTC	1 cut(s)	955
BsoBI	CYCGRG	1 cut(s)	1130
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	841
BspACI	CCGC	4 cut(s)	185, 400, 796, 988
BspANI	GGCC	7 cut(s)	106, 403, 728, 918, 1072, 1142, 1229
BspCNI	CTCAG	3 cut(s)	645, 1092, 1237
BspHI	TCATGA	1 cut(s)	1259
BspLI	GGNNCC	4 cut(s)	183, 300, 358, 1176
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	8 cut(s)	40, 68, 293, 306, 572, 746, 857, 1016
BspTNI	GGTCTC	1 cut(s)	955
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	581, 1086
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	5 cut(s)	302, 729, 759, 841, 1131
BssNAI	GTATAC	1 cut(s)	1205
BssT1I	CCWWGG	3 cut(s)	302, 759, 841
Bst1107I	GTATAC	1 cut(s)	1205
Bst2UI	CCWGG	1 cut(s)	1069
Bst4CI	ACNGT	4 cut(s)	141, 392, 723, 1123
BstC8I	GCNNGC	5 cut(s)	147, 287, 756, 916, 920
BstDEI	CTNAG	6 cut(s)	156, 561, 653, 799, 1079, 1224
BstDSI	CCRYGG	1 cut(s)	841
BstF5I	GGATG	3 cut(s)	837, 976, 1225
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	486
BstMAI	GTCTC	2 cut(s)	505, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 448
BstNI	CCWGG	1 cut(s)	1069
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	106, 1067
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	406, 434, 647, 909
BstX2I	RGATCY	3 cut(s)	298, 738, 849
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	3 cut(s)	298, 738, 849
BstZ17I	GTATAC	1 cut(s)	1205
BsuI	GTATCC	2 cut(s)	784, 1155
BsuRI	GGCC	7 cut(s)	106, 403, 728, 918, 1072, 1142, 1229
BtgI	CCRYGG	1 cut(s)	841
BtsCI	GGATG	3 cut(s)	837, 976, 1225
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	3 cut(s)	373, 719, 1093
Cac8I	GCNNGC	5 cut(s)	147, 287, 756, 916, 920
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	1259
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	4 cut(s)	69, 105, 181, 1083
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	137, 393, 1124
CviAII	CATG	6 cut(s)	15, 146, 842, 947, 1061, 1260
CviQI	GTAC	3 cut(s)	137, 393, 1124
DdeI	CTNAG	6 cut(s)	156, 561, 653, 799, 1079, 1224
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	401, 726
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	302, 759, 841
Eco147I	AGGCCT	1 cut(s)	1229
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	3 cut(s)	69, 181, 1083
Eco57I	CTGAAG	2 cut(s)	464, 767
Eco88I	CYCGRG	1 cut(s)	1130
EcoRII	CCWGG	1 cut(s)	1067
EcoT14I	CCWWGG	3 cut(s)	302, 759, 841
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	302, 759, 841
FaeI	CATG	6 cut(s)	18, 149, 845, 950, 1064, 1263
FaqI	GGGAC	1 cut(s)	1113
FatI	CATG	6 cut(s)	14, 145, 841, 946, 1060, 1259
FauI	CCCGC	2 cut(s)	192, 803
FbaI	TGATCA	1 cut(s)	1027
FblI	GTMKAC	1 cut(s)	1204
Fnu4HI	GCNGC	5 cut(s)	401, 420, 423, 636, 923
FokI	GGATG	3 cut(s)	824, 983, 1232
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	401, 420, 423, 636, 923
FspBI	CTAG	4 cut(s)	350, 552, 935, 1208
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	5 cut(s)	401, 420, 423, 636, 923
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	7 cut(s)	106, 403, 728, 918, 1072, 1142, 1229
HapII	CCGG	2 cut(s)	108, 125
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	6 cut(s)	18, 149, 845, 950, 1064, 1263
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HincII	GTYRAC	2 cut(s)	370, 952
HindII	GTYRAC	2 cut(s)	370, 952
HinfI	GANTC	4 cut(s)	250, 515, 557, 1256
HpaII	CCGG	2 cut(s)	108, 125
HphI	GGTGA	2 cut(s)	72, 139
Hpy166II	GTNNAC	3 cut(s)	370, 952, 1205
Hpy188III	TCNNGA	8 cut(s)	179, 386, 666, 935, 958, 1025, 1130, 1260
Hpy8I	GTNNAC	3 cut(s)	370, 952, 1205
Hpy99I	CGWCG	1 cut(s)	1203
HpyAV	CCTTC	4 cut(s)	30, 87, 565, 729
HpyCH4III	ACNGT	4 cut(s)	141, 392, 723, 1123
HpyCH4IV	ACGT	2 cut(s)	1126, 1201
HpyCH4V	TGCA	4 cut(s)	149, 278, 422, 871
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 448
HpyF3I	CTNAG	6 cut(s)	156, 561, 653, 799, 1079, 1224
HpySE526I	ACGT	2 cut(s)	1126, 1201
Hsp92II	CATG	6 cut(s)	18, 149, 845, 950, 1064, 1263
HspAI	GCGC	1 cut(s)	484
Ksp22I	TGATCA	1 cut(s)	1027
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	4 cut(s)	406, 434, 647, 909
LweI	GCATC	3 cut(s)	334, 858, 1210
MaeI	CTAG	4 cut(s)	350, 552, 935, 1208
MaeII	ACGT	2 cut(s)	1126, 1201
MaeIII	GTNAC	3 cut(s)	59, 554, 1063
MboII	GAAGA	7 cut(s)	45, 457, 733, 773, 844, 1199, 1202
MflI	RGATCY	3 cut(s)	298, 738, 849
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	212, 259, 318, 453, 508, 586, 617
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	5 cut(s)	48, 54, 144, 827, 955
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	2 cut(s)	132, 585
MslI	CAYNNNNRTG	2 cut(s)	378, 545
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	108, 125
MspR9I	CCNGG	2 cut(s)	108, 1069
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	1069
MwoI	GCNNNNNNNGC	2 cut(s)	409, 448
NciI	CCSGG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	841
NlaIII	CATG	6 cut(s)	18, 149, 845, 950, 1064, 1263
NlaIV	GGNNCC	4 cut(s)	183, 300, 358, 1176
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	2 cut(s)	59, 554
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PagI	TCATGA	1 cut(s)	1259
PceI	AGGCCT	1 cut(s)	1229
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	250, 515, 1256
PkrI	GCNGC	5 cut(s)	402, 421, 424, 637, 924
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	1067
PspGI	CCWGG	1 cut(s)	1067
PspN4I	GGNNCC	4 cut(s)	183, 300, 358, 1176
PspPI	GGNCC	4 cut(s)	69, 105, 181, 1083
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	3 cut(s)	298, 738, 849
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	138, 394, 1125
RsaNI	GTAC	3 cut(s)	137, 393, 1124
RseI	CAYNNNNRTG	2 cut(s)	378, 545
SaqAI	TTAA	2 cut(s)	132, 585
SatI	GCNGC	5 cut(s)	401, 420, 423, 636, 923
Sau96I	GGNCC	4 cut(s)	69, 105, 181, 1083
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	108, 1069
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	334, 858, 1210
SfcI	CTRYAG	1 cut(s)	420
SgrAI	CRCCGGYG	1 cut(s)	124
SinI	GGWCC	3 cut(s)	69, 181, 1083
SmiMI	CAYNNNNRTG	2 cut(s)	378, 545
SmlI	CTYRAG	1 cut(s)	958
SmoI	CTYRAG	1 cut(s)	958
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	7 cut(s)	212, 259, 318, 453, 508, 586, 617
SseBI	AGGCCT	1 cut(s)	1229
SsiI	CCGC	4 cut(s)	185, 400, 796, 988
SspMI	CTAG	4 cut(s)	350, 552, 935, 1208
StuI	AGGCCT	1 cut(s)	1229
StyD4I	CCNGG	2 cut(s)	106, 1067
StyI	CCWWGG	3 cut(s)	302, 759, 841
TaaI	ACNGT	4 cut(s)	141, 392, 723, 1123
TaiI	ACGT	2 cut(s)	1129, 1204
TaqI	TCGA	4 cut(s)	8, 210, 665, 942
TasI	AATT	7 cut(s)	212, 259, 318, 453, 508, 586, 617
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	3 cut(s)	250, 515, 1256
Tru1I	TTAA	2 cut(s)	132, 585
Tru9I	TTAA	2 cut(s)	132, 585
TscAI	CASTG	3 cut(s)	380, 726, 1093
TseFI	GTSAC	2 cut(s)	59, 554
TseI	GCWGC	4 cut(s)	419, 422, 635, 922
Tsp45I	GTSAC	2 cut(s)	59, 554
TspDTI	ATGAA	3 cut(s)	529, 1086, 1227
TspGWI	ACGGA	1 cut(s)	1180
TspRI	CASTG	3 cut(s)	380, 726, 1093
VpaK11BI	GGWCC	3 cut(s)	69, 181, 1083
XbaI	TCTAGA	1 cut(s)	934
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	1204
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	4 cut(s)	350, 552, 935, 1208
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.