Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

18351762 .. 18355111

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G185500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGACTTGAATTCCTCTCCTCCCAATTCCAATTCCAACACCGCCATTCCCGTAGTCTCAACCTTTTCATCGCCTTTCGAGAACCCGGCTTCGGTACAAGATGGGCCCAACGGTTCGACCCGAAAGCCCATAAGCTTGTGGCCCGGAATGTACCAGTCGCCGGTGACAAATGCACTGTGGGAAGCGAGGTCTAAGATCTTCGAGAGGTTCTTTTTGGACCCTCCGAAAGACGCTCCTCCACAGAGCGAGTTGCTCAACAAGACTCCGGCGCAGAGCAGGACCACAATTCTGTACAATTTCTCGTCGGATTATATATTGAGGGAGCAGTACAGGGATCCTTGGAATGAGGTTAGAATTGGGAAATTGCTTGAGGACCTTGATGCTTTAGCGGGAACCATTTCTGTCAAGCACTGTTCTGACGATGATTGCACAACAAGGCCACTCTTGCTGGTCACTGCATCTGTTGACAAGATTGTTCTGAAGAAGCCAATTAGTGTTGATATTGATCTAAACATAGTTGGTGCTGTCATATGGGTTGGGCGATCATCTATTGAGATTCAATTAGAAGTCACCCAGTCCTCTAAAGAAGGATCTGACAATTCAGACTCAGTAGCTCTTTCAGCAAACTTCATATTTGTGGCTCGTGATTCTAAGACTGGAAAAGCTGCTCCAGTTAATAGGATCTCACCAGAAACTGAAAGAGAAAAATTGCTTTTCGAGGAAGCAGAAGCCAGAAATAATCTGAGGAAAAGAAAGAGAGGAGGAGGAGACAAAAGGGAGTTTGAGAATGGAGAAGTAAATAGACTTGAAACACTGTTGGCTGAGGGAAGGATCTTCTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCTGAGGGATACCCGCTTGGAAAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGAATCTTTGGAGGGTTTCTGATGCACCGTGCATTTGAATTGGCTTTCTCCACAGCTTATGCCTTTGCGGGCTTAGTGCCTTACTTTCTAGAAGTTGATCACGTTGACTTCTTGAGACCTGTGGACGTTGGAGACTTCCTGCGTTTCAAATCATGTGTCCTCTACACAGAAGTTAATCCAGATCAGCCTCTGATTAATATTGAAGTTGTAGCTCACGTTACCAGGCCTGAGCTCAGGTCTAGTGAGGTATCGAATACATTTTATTTCACCTTCACTGTACGTCCCGAGGCGAAGGCCAAGAAAAATGGATTTAGGATACTAAATGTGGTTCCAGCAACAGAGGAAGAAGCACGCCATATAGTAGACCGCATGGATTCTCAAGCCTTGCTTTCAACAAGAGGCTTCGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

451

Amino Acids

50.46

Weight (kDa)

5.73

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1302
AciI	CCGC	5 cut(s)	42, 389, 889, 1007, 1306
AclWI	GGATC	5 cut(s)	329, 342, 598, 689, 839
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	5 cut(s)	96, 152, 293, 329, 1218
AfiI	CCNNNNNNNGG	2 cut(s)	91, 160
AgsI	TTSAA	7 cut(s)	10, 560, 809, 977, 1087, 1142, 1332
AjnI	CCWGG	1 cut(s)	1160
AluBI	AGCT	6 cut(s)	135, 614, 665, 995, 1151, 1171
AluI	AGCT	6 cut(s)	135, 614, 665, 995, 1151, 1171
Alw21I	GWGCWC	1 cut(s)	1173
Alw26I	GTCTC	4 cut(s)	61, 762, 1048, 1065
AlwI	GGATC	5 cut(s)	329, 342, 598, 689, 839
AlwNI	CAGNNNCTG	2 cut(s)	695, 1129
Ama87I	CYCGRG	1 cut(s)	1223
AoxI	GGCC	5 cut(s)	104, 140, 437, 1163, 1233
ApaI	GGGCCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	1 cut(s)	10
ArsI	GACNNNNNNTTYG	2 cut(s)	1080, 1112
AseI	ATTAAT	1 cut(s)	1134
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	6 cut(s)	104, 105, 141, 217, 279, 373
AsuC2I	CCSGG	2 cut(s)	86, 144
AsuHPI	GGTGA	4 cut(s)	175, 562, 678, 1198
AvaI	CYCGRG	1 cut(s)	1223
AvaII	GGWCC	3 cut(s)	217, 279, 373
BaeGI	GKGCMC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	108, 1173
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	1173
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	1162
BciVI	GTATCC	2 cut(s)	877, 1248
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	2 cut(s)	86, 144
BcoDI	GTCTC	4 cut(s)	61, 762, 1048, 1065
BfaI	CTAG	2 cut(s)	1028, 1179
BfuI	GTATCC	2 cut(s)	877, 1248
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	3 cut(s)	86, 144, 1162
Bme18I	GGWCC	3 cut(s)	217, 279, 373
BmeT110I	CYCGRG	1 cut(s)	1223
BmgT120I	GGNCC	6 cut(s)	104, 105, 141, 217, 279, 373
BmiI	GGNNCC	5 cut(s)	106, 219, 336, 394, 1269
BmrFI	CCNGG	3 cut(s)	86, 144, 1162
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	3 cut(s)	370, 467, 951
BmuI	ACTGGG	1 cut(s)	568
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	3 cut(s)	822, 1167, 1172
BpuEI	CTTGAG	3 cut(s)	389, 1072, 1302
BpuMI	CCSGG	2 cut(s)	86, 144
BsaBI	GATNNNNATC	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	1048
BsaJI	CCNNGG	4 cut(s)	338, 852, 934, 1224
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 160
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	4 cut(s)	154, 574, 661, 671
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	1162
BseDI	CCNNGG	4 cut(s)	338, 852, 934, 1224
BseGI	GGATG	1 cut(s)	930
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	2 cut(s)	91, 160
BseMII	CTCAG	6 cut(s)	621, 734, 813, 869, 1158, 1186
BseNI	ACTGG	4 cut(s)	154, 574, 661, 671
BseRI	GAGGAG	5 cut(s)	9, 225, 774, 777, 780
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	652
BshFI	GGCC	5 cut(s)	106, 142, 439, 1165, 1235
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	1 cut(s)	1223
BsiSI	CCGG	4 cut(s)	86, 144, 161, 266
BslFI	GGGAC	1 cut(s)	1206
BslI	CCNNNNNNNGG	2 cut(s)	91, 160
BsmAI	GTCTC	4 cut(s)	61, 762, 1048, 1065
BsmFI	GGGAC	1 cut(s)	1206
BsmI	GAATGC	1 cut(s)	870
BsnI	GGCC	5 cut(s)	106, 142, 439, 1165, 1235
Bso31I	GGTCTC	1 cut(s)	1048
BsoBI	CYCGRG	1 cut(s)	1223
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	108, 1173
Bsp1407I	TGTACA	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	934
BspACI	CCGC	5 cut(s)	42, 389, 889, 1007, 1306
BspANI	GGCC	5 cut(s)	106, 142, 439, 1165, 1235
BspCNI	CTCAG	6 cut(s)	620, 735, 814, 870, 1159, 1185
BspLI	GGNNCC	5 cut(s)	106, 219, 336, 394, 1269
BspPI	GGATC	5 cut(s)	329, 342, 598, 689, 839
BspTNI	GGTCTC	1 cut(s)	1048
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	4 cut(s)	154, 574, 661, 671
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	4 cut(s)	338, 852, 934, 1224
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	3 cut(s)	338, 852, 934
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	1162
Bst4CI	ACNGT	6 cut(s)	113, 177, 413, 816, 968, 1216
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	849, 1009, 1291
BstDEI	CTNAG	9 cut(s)	192, 607, 651, 743, 822, 878, 1012, 1167, 1172
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	271
BstMAI	GTCTC	4 cut(s)	61, 762, 1048, 1065
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 620
BstNI	CCWGG	1 cut(s)	1162
BstSCI	CCNGG	3 cut(s)	84, 142, 1160
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	652
BstX2I	RGATCY	5 cut(s)	195, 334, 590, 681, 831
BstYI	RGATCY	5 cut(s)	195, 334, 590, 681, 831
BsuI	GTATCC	2 cut(s)	877, 1248
BsuRI	GGCC	5 cut(s)	106, 142, 439, 1165, 1235
BtgI	CCRYGG	1 cut(s)	934
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	930
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	5 cut(s)	173, 409, 453, 812, 1212
Cac8I	GCNNGC	3 cut(s)	849, 1009, 1291
CaiI	CAGNNNCTG	2 cut(s)	695, 1129
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	6 cut(s)	104, 105, 141, 217, 279, 373
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	5 cut(s)	95, 151, 292, 328, 1217
CviAII	CATG	3 cut(s)	935, 1092, 1309
CviQI	GTAC	5 cut(s)	95, 151, 292, 328, 1217
DdeI	CTNAG	9 cut(s)	192, 607, 651, 743, 822, 878, 1012, 1167, 1172
Ecl136II	GAGCTC	1 cut(s)	1171
Eco130I	CCWWGG	3 cut(s)	338, 852, 934
Eco147I	AGGCCT	1 cut(s)	1165
Eco24I	GRGCYC	2 cut(s)	108, 1173
Eco31I	GGTCTC	1 cut(s)	1048
Eco47I	GGWCC	3 cut(s)	217, 279, 373
Eco53kI	GAGCTC	1 cut(s)	1171
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	1223
EcoICRI	GAGCTC	1 cut(s)	1171
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	1160
EcoT14I	CCWWGG	3 cut(s)	338, 852, 934
EcoT38I	GRGCYC	2 cut(s)	108, 1173
ErhI	CCWWGG	3 cut(s)	338, 852, 934
FaeI	CATG	3 cut(s)	938, 1095, 1312
FalI	AAGNNNNNCTT	2 cut(s)	1311, 1343
FaqI	GGGAC	1 cut(s)	1206
FatI	CATG	3 cut(s)	934, 1091, 1308
FauI	CCCGC	3 cut(s)	382, 896, 1000
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1302
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	1 cut(s)	917
FriOI	GRGCYC	2 cut(s)	108, 1173
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	2 cut(s)	1028, 1179
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	666
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	106, 142, 439, 1165, 1235
HapII	CCGG	4 cut(s)	86, 144, 161, 266
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	938, 1095, 1312
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	2 cut(s)	466, 1045
HindII	GTYRAC	2 cut(s)	466, 1045
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	6 cut(s)	262, 556, 605, 647, 942, 1313
HpaII	CCGG	4 cut(s)	86, 144, 161, 266
HphI	GGTGA	4 cut(s)	175, 562, 678, 1198
Hpy166II	GTNNAC	4 cut(s)	466, 1045, 1063, 1303
Hpy188III	TCNNGA	7 cut(s)	79, 202, 644, 1028, 1051, 1118, 1223
Hpy8I	GTNNAC	4 cut(s)	466, 1045, 1063, 1303
Hpy99I	CGWCG	1 cut(s)	307
HpyAV	CCTTC	4 cut(s)	581, 822, 1219, 1225
HpyCH4III	ACNGT	6 cut(s)	113, 177, 413, 816, 968, 1216
HpyCH4IV	ACGT	4 cut(s)	1041, 1065, 1155, 1219
HpyCH4V	TGCA	5 cut(s)	173, 429, 458, 964, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 620
HpyF3I	CTNAG	9 cut(s)	192, 607, 651, 743, 822, 878, 1012, 1167, 1172
HpySE526I	ACGT	4 cut(s)	1041, 1065, 1155, 1219
Hsp92II	CATG	3 cut(s)	938, 1095, 1312
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	1036
LmnI	GCTCC	3 cut(s)	238, 322, 673
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	3 cut(s)	370, 467, 951
MaeI	CTAG	2 cut(s)	1028, 1179
MaeII	ACGT	4 cut(s)	1041, 1065, 1155, 1219
MaeIII	GTNAC	4 cut(s)	163, 451, 568, 1156
MboII	GAAGA	5 cut(s)	190, 493, 826, 866, 1295
MflI	RGATCY	5 cut(s)	195, 334, 590, 681, 831
MhlI	GDGCHC	2 cut(s)	108, 1173
MlyI	GAGTC	2 cut(s)	256, 599
MmeI	TCCRAC	3 cut(s)	60, 285, 1048
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	3 cut(s)	675, 1113, 1134
MslI	CAYNNNNRTG	1 cut(s)	635
MspI	CCGG	4 cut(s)	86, 144, 161, 266
MspR9I	CCNGG	3 cut(s)	86, 144, 1162
Mva1269I	GAATGC	1 cut(s)	870
MvaI	CCWGG	1 cut(s)	1162
MwoI	GCNNNNNNNGC	2 cut(s)	445, 620
NciI	CCSGG	2 cut(s)	86, 144
NcoI	CCATGG	1 cut(s)	934
NdeI	CATATG	1 cut(s)	530
NlaIII	CATG	3 cut(s)	938, 1095, 1312
NlaIV	GGNNCC	5 cut(s)	106, 219, 336, 394, 1269
NmuCI	GTSAC	3 cut(s)	163, 451, 568
PceI	AGGCCT	1 cut(s)	1165
PctI	GAATGC	1 cut(s)	870
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	4 cut(s)	556, 647, 942, 1313
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	2 cut(s)	256, 599
PpsI	GAGTC	2 cut(s)	256, 599
PpuMI	RGGWCCY	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	1134
Psp124BI	GAGCTC	1 cut(s)	1173
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	1160
PspGI	CCWGG	1 cut(s)	1160
PspN4I	GGNNCC	5 cut(s)	106, 219, 336, 394, 1269
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	6 cut(s)	104, 105, 141, 217, 279, 373
PspPPI	RGGWCCY	1 cut(s)	373
PstNI	CAGNNNCTG	2 cut(s)	695, 1129
PsuI	RGATCY	5 cut(s)	195, 334, 590, 681, 831
RsaI	GTAC	5 cut(s)	96, 152, 293, 329, 1218
RsaNI	GTAC	5 cut(s)	95, 151, 292, 328, 1217
RseI	CAYNNNNRTG	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	1173
SaqAI	TTAA	3 cut(s)	675, 1113, 1134
SatI	GCNGC	1 cut(s)	666
Sau96I	GGNCC	6 cut(s)	104, 105, 141, 217, 279, 373
SchI	GAGTC	2 cut(s)	256, 599
ScrFI	CCNGG	3 cut(s)	86, 144, 1162
SduI	GDGCHC	2 cut(s)	108, 1173
SfaNI	GCATC	3 cut(s)	370, 467, 951
SgrAI	CRCCGGYG	1 cut(s)	160
SinI	GGWCC	3 cut(s)	217, 279, 373
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	368, 1051, 1317
SmoI	CTYRAG	3 cut(s)	368, 1051, 1317
SseBI	AGGCCT	1 cut(s)	1165
SsiI	CCGC	5 cut(s)	42, 389, 889, 1007, 1306
SspI	AATATT	1 cut(s)	1138
SspMI	CTAG	2 cut(s)	1028, 1179
SstI	GAGCTC	1 cut(s)	1173
StuI	AGGCCT	1 cut(s)	1165
StyD4I	CCNGG	3 cut(s)	84, 142, 1160
StyI	CCWWGG	3 cut(s)	338, 852, 934
TaaI	ACNGT	6 cut(s)	113, 177, 413, 816, 968, 1216
TaiI	ACGT	4 cut(s)	1044, 1068, 1158, 1222
TaqI	TCGA	6 cut(s)	78, 116, 201, 717, 940, 1190
TatI	WGTACW	2 cut(s)	291, 327
TfiI	GAWTC	4 cut(s)	556, 647, 942, 1313
Tru1I	TTAA	3 cut(s)	675, 1113, 1134
Tru9I	TTAA	3 cut(s)	675, 1113, 1134
TscAI	CASTG	5 cut(s)	180, 416, 460, 819, 1219
TseFI	GTSAC	3 cut(s)	163, 451, 568
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	3 cut(s)	163, 451, 568
TspDTI	ATGAA	2 cut(s)	57, 619
TspRI	CASTG	5 cut(s)	180, 416, 460, 819, 1219
VpaK11BI	GGWCC	3 cut(s)	217, 279, 373
VspI	ATTAAT	1 cut(s)	1134
XapI	RAATTY	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	1027
XmiI	GTMKAC	1 cut(s)	1302
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	2 cut(s)	1028, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.