Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001700.1

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2728

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001700.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggacccaaactcatctccttccaattccaacaccactattccggtagtggcaaccctccctgcttacgggtcggactctttgacccggaagcccatcagcttgtggcccggaatgttccactcgccggtgaccaaggcactgtgggaagcgaggtctcacatgttcgagaggctgttggacccaccagtggacgctcctccacagagccaattgctgaacaagactccatcgcagagcaggactacaattctgtacaatttctctactgattttatactgagggagcagtacagggatccttggaatgaggtcagaattgggaaactgcttgaagaccttgatgctttagctggaaccatttccgtcaagcactgctatgctgttgataccacaacgaggccactcttgctggtcactgcgtctgttgacaagattgtcttgaagaagccgattagtgttgacattgacttgaaaatagttggtgctgtcatatgggtggggcgatcatctattgagatccaactagaagttactcaatccacaaaaggctgtgacaattccgactcattagccctttcagccaacttcatatttgtggctcgtgactctaagactgggaaggctgctccagttaataggctcttaccagaaactgaaagagaacaattgcttttcaaggaagcagaaaccagaaatactctgaggaagagaacgaaaggaggagaaaaaagggagtttgagaatggagaagtaaatagacttgaaagcctgttggcggagggaaggatcttttgtgatatgcctgccttggcagacagagatagcattcttctgagggataccagcttagagaactcattgatctgccaaccacagcagagaaacatccatggtcggatctttggaggatttttaatgcacagagcatttgaattggctttctccacagcttatgcttttgctggcctggtgccttgctttctagaagtcgatcacgttgacttcttgagacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

339

Amino Acids

37.91

Weight (kDa)

6.34

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	973
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	5 cut(s)	293, 306, 514, 797, 908
AfaI	GTAC	2 cut(s)	257, 293
AfiI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	335, 445, 475, 679, 767, 935
AjnI	CCWGG	1 cut(s)	969
AluBI	AGCT	4 cut(s)	102, 353, 849, 953
AluI	AGCT	4 cut(s)	102, 353, 849, 953
Alw26I	GTCTC	2 cut(s)	162, 1006
AlwI	GGATC	5 cut(s)	293, 306, 514, 797, 908
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	3 cut(s)	107, 401, 967
ApeKI	GCWGC	1 cut(s)	626
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	4, 108, 181
AsuC2I	CCSGG	2 cut(s)	88, 111
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	4, 181
BamHI	GGATCC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	973
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	104, 238
BciT130I	CCWGG	1 cut(s)	971
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	2 cut(s)	88, 111
BcoDI	GTCTC	2 cut(s)	162, 1006
BfaI	CTAG	2 cut(s)	527, 986
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	3 cut(s)	88, 111, 971
Bme18I	GGWCC	2 cut(s)	4, 181
BmgT120I	GGNCC	3 cut(s)	4, 108, 181
BmiI	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
BmrFI	CCNGG	3 cut(s)	88, 111, 971
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	615
BpuMI	CCSGG	2 cut(s)	88, 111
BsaI	GGTCTC	2 cut(s)	162, 1006
BsaJI	CCNNGG	4 cut(s)	135, 302, 810, 892
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	3 cut(s)	188, 622, 632
BseBI	CCWGG	1 cut(s)	971
BseDI	CCNNGG	4 cut(s)	135, 302, 810, 892
BseGI	GGATG	1 cut(s)	888
BseLI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
BseMII	CTCAG	3 cut(s)	272, 695, 827
BseNI	ACTGG	3 cut(s)	188, 622, 632
BseRI	GAGGAG	2 cut(s)	189, 738
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	3 cut(s)	109, 403, 969
BshNI	GGYRCC	1 cut(s)	973
BsiSI	CCGG	4 cut(s)	44, 88, 111, 128
BslI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
BsmAI	GTCTC	2 cut(s)	162, 1006
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	3 cut(s)	109, 403, 969
Bso31I	GGTCTC	2 cut(s)	162, 1006
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	3 cut(s)	109, 403, 969
BspCNI	CTCAG	3 cut(s)	273, 696, 828
BspLI	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
BspPI	GGATC	5 cut(s)	293, 306, 514, 797, 908
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	2 cut(s)	162, 1006
BsrFI	RCCGGY	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	188, 622, 632
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	135, 302, 810, 892
BssMI	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	4 cut(s)	135, 302, 810, 892
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	704
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	807, 967
BstDEI	CTNAG	5 cut(s)	281, 612, 704, 836, 850
BstDSI	CCRYGG	1 cut(s)	892
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	888
BstKTI	GATC	7 cut(s)	301, 509, 522, 792, 867, 903, 997
BstMAI	GTCTC	2 cut(s)	162, 1006
BstMBI	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 581
BstNI	CCWGG	1 cut(s)	971
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	3 cut(s)	86, 109, 969
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	4 cut(s)	298, 519, 789, 900
BstYI	RGATCY	4 cut(s)	298, 519, 789, 900
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	3 cut(s)	109, 403, 969
BtgI	CCRYGG	1 cut(s)	892
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	888
BtsI	GCAGTG	2 cut(s)	373, 417
BtsIMutI	CAGTG	4 cut(s)	140, 195, 373, 417
Cac8I	GCNNGC	2 cut(s)	807, 967
CaiI	CAGNNNCTG	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	4, 108, 181
CseI	GACGC	2 cut(s)	203, 411
Csp6I	GTAC	2 cut(s)	256, 292
CviAII	CATG	2 cut(s)	163, 893
CviQI	GTAC	2 cut(s)	256, 292
DdeI	CTNAG	5 cut(s)	281, 612, 704, 836, 850
DpnI	GATC	7 cut(s)	300, 508, 521, 791, 866, 902, 996
DpnII	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	4 cut(s)	135, 302, 810, 892
Eco31I	GGTCTC	2 cut(s)	162, 1006
Eco47I	GGWCC	2 cut(s)	4, 181
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	969
EcoT14I	CCWWGG	4 cut(s)	135, 302, 810, 892
ErhI	CCWWGG	4 cut(s)	135, 302, 810, 892
FaeI	CATG	2 cut(s)	166, 896
FaiI	YATR	9 cut(s)	164, 278, 381, 494, 496, 593, 803, 894, 957
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	2 cut(s)	162, 892
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	1 cut(s)	875
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	527, 986
GluI	GCNGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	109, 403, 969
HapII	CCGG	4 cut(s)	44, 88, 111, 128
HgaI	GACGC	2 cut(s)	203, 411
Hin1II	CATG	2 cut(s)	166, 896
HincII	GTYRAC	3 cut(s)	430, 463, 1003
HindII	GTYRAC	3 cut(s)	430, 463, 1003
HinfI	GANTC	4 cut(s)	77, 226, 566, 608
HpaII	CCGG	4 cut(s)	44, 88, 111, 128
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	193, 430, 463, 1003
Hpy188I	TCNGA	6 cut(s)	76, 317, 565, 705, 837, 900
Hpy188III	TCNNGA	5 cut(s)	169, 442, 605, 986, 1009
Hpy8I	GTNNAC	4 cut(s)	193, 430, 463, 1003
HpyAV	CCTTC	3 cut(s)	30, 616, 780
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	1 cut(s)	922
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 581
HpyF3I	CTNAG	5 cut(s)	281, 612, 704, 836, 850
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	2 cut(s)	166, 896
Kzo9I	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
LmnI	GCTCC	3 cut(s)	202, 286, 634
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	527, 986
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	5 cut(s)	130, 415, 532, 554, 605
MalI	GATC	7 cut(s)	300, 508, 521, 791, 866, 902, 996
MboI	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
MboII	GAAGA	4 cut(s)	347, 457, 721, 824
MfeI	CAATTG	2 cut(s)	212, 668
MflI	RGATCY	4 cut(s)	298, 519, 789, 900
MluCI	AATT	8 cut(s)	25, 212, 249, 259, 318, 559, 668, 935
MlyI	GAGTC	4 cut(s)	71, 220, 560, 602
MmeI	TCCRAC	6 cut(s)	54, 54, 159, 547, 588, 878
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	2 cut(s)	636, 917
MslI	CAYNNNNRTG	3 cut(s)	378, 497, 596
MspI	CCGG	4 cut(s)	44, 88, 111, 128
MspR9I	CCNGG	3 cut(s)	88, 111, 971
MunI	CAATTG	2 cut(s)	212, 668
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	971
MwoI	GCNNNNNNNGC	2 cut(s)	409, 581
NciI	CCSGG	2 cut(s)	88, 111
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
NlaIII	CATG	2 cut(s)	166, 896
NlaIV	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
NmuCI	GTSAC	4 cut(s)	130, 415, 554, 605
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	4 cut(s)	71, 220, 560, 602
PpsI	GAGTC	4 cut(s)	71, 220, 560, 602
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	969
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	969
PspN4I	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
PspPI	GGNCC	3 cut(s)	4, 108, 181
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	4 cut(s)	298, 519, 789, 900
RsaI	GTAC	2 cut(s)	257, 293
RsaNI	GTAC	2 cut(s)	256, 292
RseI	CAYNNNNRTG	3 cut(s)	378, 497, 596
SaqAI	TTAA	2 cut(s)	636, 917
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	7 cut(s)	298, 506, 519, 789, 864, 900, 994
Sau96I	GGNCC	3 cut(s)	4, 108, 181
SchI	GAGTC	4 cut(s)	71, 220, 560, 602
ScrFI	CCNGG	3 cut(s)	88, 111, 971
SetI	ASST	8 cut(s)	104, 158, 315, 342, 355, 851, 955, 1002
SfaNI	GCATC	1 cut(s)	334
SgrAI	CRCCGGYG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	4, 181
SmiMI	CAYNNNNRTG	3 cut(s)	378, 497, 596
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
Sse9I	AATT	8 cut(s)	25, 212, 249, 259, 318, 559, 668, 935
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	2 cut(s)	527, 986
StyD4I	CCNGG	3 cut(s)	86, 109, 969
StyI	CCWWGG	4 cut(s)	135, 302, 810, 892
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	2 cut(s)	168, 993
TasI	AATT	8 cut(s)	25, 212, 249, 259, 318, 559, 668, 935
TatI	WGTACW	2 cut(s)	255, 291
Tru1I	TTAA	2 cut(s)	636, 917
Tru9I	TTAA	2 cut(s)	636, 917
TscAI	CASTG	4 cut(s)	147, 195, 380, 424
TseFI	GTSAC	4 cut(s)	130, 415, 554, 605
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	4 cut(s)	130, 415, 554, 605
TspDTI	ATGAA	1 cut(s)	580
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	4 cut(s)	147, 195, 380, 424
VpaK11BI	GGWCC	2 cut(s)	4, 181
XbaI	TCTAGA	1 cut(s)	985
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	2 cut(s)	527, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.