Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

45362160 .. 45363536

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGCTCGATTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCTTATCTTCTTTGGAAATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAAAGGCACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTTTTTCTGGACCCGCCAATGGACGCTCCTCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTAAGGATTATACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGGTAGAATTGGTAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACCCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAATTGACCTGAAAATAGTTGGTGCTGTAATATGGGTGGGGAGCTCAGCTATTGAGATCCAACTAGAAGTCACTCAATCCATAGAAGAAGTCTCAGACAATTCGGATTCTTTAGTCCTTTCAGCCAACTTCATATTTGTGGCTGGTGACTCTAAGAATGGGAAGGCTGCTCCAGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

223

Amino Acids

24.37

Weight (kDa)

5.81

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 427
AclWI	GGATC	4 cut(s)	95, 320, 333, 541
AcoI	YGGCCR	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
AgsI	TTSAA	2 cut(s)	458, 491
AluBI	AGCT	4 cut(s)	126, 380, 534, 539
AluI	AGCT	4 cut(s)	126, 380, 534, 539
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	586
AlwI	GGATC	4 cut(s)	95, 320, 333, 541
AoxI	GGCC	2 cut(s)	131, 428
ApeKI	GCWGC	1 cut(s)	656
Asp700I	GAANNNNTTC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	96, 132, 208
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	3 cut(s)	99, 166, 647
AvaII	GGWCC	2 cut(s)	96, 208
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	2 cut(s)	8, 536
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	377, 554
BisI	GCNGC	2 cut(s)	428, 657
BlpI	GCTNAGC	1 cut(s)	535
BlsI	GCNGC	2 cut(s)	429, 658
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	2 cut(s)	96, 208
BmgT120I	GGNCC	3 cut(s)	96, 132, 208
BmiI	GGNNCC	3 cut(s)	210, 327, 385
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	361, 458
BpmI	CTGGAG	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	662
BseDI	CCNNGG	1 cut(s)	329
BseLI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BseMII	CTCAG	2 cut(s)	549, 597
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	643
BshFI	GGCC	2 cut(s)	133, 430
BsiHKAI	GWGCWC	1 cut(s)	536
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslI	CCNNNNNNNGG	4 cut(s)	82, 83, 151, 217
BsmAI	GTCTC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	133, 430
Bsp1286I	GDGCHC	2 cut(s)	8, 536
Bsp143I	GATC	4 cut(s)	100, 325, 409, 546
Bsp1720I	GCTNAGC	1 cut(s)	535
BspACI	CCGC	2 cut(s)	212, 427
BspANI	GGCC	2 cut(s)	133, 430
BspCNI	CTCAG	2 cut(s)	548, 596
BspLI	GGNNCC	3 cut(s)	210, 327, 385
BspPI	GGATC	4 cut(s)	95, 320, 333, 541
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	662
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	4 cut(s)	100, 325, 409, 546
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	5 cut(s)	183, 294, 535, 583, 642
BstKTI	GATC	4 cut(s)	103, 328, 412, 549
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	4 cut(s)	100, 325, 409, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 475
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	643
BstX2I	RGATCY	2 cut(s)	325, 546
BstYI	RGATCY	2 cut(s)	325, 546
BsuRI	GGCC	2 cut(s)	133, 430
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	3 cut(s)	164, 400, 444
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	3 cut(s)	96, 132, 208
CseI	GACGC	1 cut(s)	230
CviAII	CATG	2 cut(s)	15, 173
DdeI	CTNAG	5 cut(s)	183, 294, 535, 583, 642
DpnI	GATC	4 cut(s)	102, 327, 411, 548
DpnII	GATC	4 cut(s)	100, 325, 409, 546
EaeI	YGGCCR	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	2 cut(s)	8, 536
Eco47I	GGWCC	2 cut(s)	96, 208
Eco53kI	GAGCTC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	2 cut(s)	8, 536
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	18, 176
FaiI	YATR	8 cut(s)	16, 174, 285, 303, 408, 523, 572, 623
FatI	CATG	2 cut(s)	14, 172
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	428, 657
FriOI	GRGCYC	2 cut(s)	8, 536
Fsp4HI	GCNGC	2 cut(s)	428, 657
FspBI	CTAG	2 cut(s)	377, 554
GluI	GCNGC	2 cut(s)	428, 657
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	133, 430
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	18, 176
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	596, 638
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	3 cut(s)	99, 166, 647
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	4 cut(s)	100, 325, 586, 595
Hpy188III	TCNNGA	2 cut(s)	206, 413
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	30, 114, 646
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	176, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 475
HpyF3I	CTNAG	5 cut(s)	183, 294, 535, 583, 642
Hsp92II	CATG	2 cut(s)	18, 176
Kzo9I	GATC	4 cut(s)	100, 325, 409, 546
LmnI	GCTCC	4 cut(s)	229, 313, 531, 664
LpnPI	CCDG	9 cut(s)	57, 148, 165, 191, 253, 366, 425, 512, 618
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	2 cut(s)	361, 458
MaeI	CTAG	2 cut(s)	377, 554
MaeIII	GTNAC	5 cut(s)	86, 154, 442, 559, 635
MalI	GATC	4 cut(s)	102, 327, 411, 548
MboI	GATC	4 cut(s)	100, 325, 409, 546
MboII	GAAGA	4 cut(s)	54, 72, 484, 587
MflI	RGATCY	2 cut(s)	325, 546
MhlI	GDGCHC	2 cut(s)	8, 536
MluCI	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 667
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	4 cut(s)	48, 54, 171, 574
MnlI	CCTC	5 cut(s)	189, 237, 268, 303, 331
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	2 cut(s)	405, 626
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	436, 475
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	4 cut(s)	100, 325, 409, 546
NlaIII	CATG	2 cut(s)	18, 176
NlaIV	GGNNCC	3 cut(s)	210, 327, 385
NmuCI	GTSAC	5 cut(s)	86, 154, 442, 559, 635
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	429, 658
PleI	GAGTC	1 cut(s)	632
PpsI	GAGTC	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	536
PspN4I	GGNNCC	3 cut(s)	210, 327, 385
PspPI	GGNCC	3 cut(s)	96, 132, 208
PsuI	RGATCY	2 cut(s)	325, 546
RseI	CAYNNNNRTG	2 cut(s)	405, 626
SacI	GAGCTC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	2 cut(s)	428, 657
Sau3AI	GATC	4 cut(s)	100, 325, 409, 546
Sau96I	GGNCC	3 cut(s)	96, 132, 208
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	8, 536
SetI	ASST	8 cut(s)	59, 98, 128, 369, 382, 501, 536, 541
SfaNI	GCATC	2 cut(s)	361, 458
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	96, 208
SmiMI	CAYNNNNRTG	2 cut(s)	405, 626
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 667
SsiI	CCGC	2 cut(s)	212, 427
SspMI	CTAG	2 cut(s)	377, 554
SstI	GAGCTC	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	8
TasI	AATT	8 cut(s)	239, 276, 286, 345, 480, 492, 589, 667
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	596
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	3 cut(s)	171, 407, 451
TseFI	GTSAC	5 cut(s)	86, 154, 442, 559, 635
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	5 cut(s)	86, 154, 442, 559, 635
TspDTI	ATGAA	1 cut(s)	610
TspRI	CASTG	3 cut(s)	171, 407, 451
VpaK11BI	GGWCC	2 cut(s)	96, 208
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	2 cut(s)	377, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.