Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

47524250 .. 47526706

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG261000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGACGCTCCTCCACAGAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTAAGGATTATACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGGTAGAATTGGGAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACTCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAAGACCTGAAAATAGTTGGTGCTTCTCTGACAATTCGGATTCTTTAGTCCTTTCAGCCAACTTCATATTTGTGGCTAGTGACTCCAAGAATGGGAAGGCTGCTCCAGTTAATTGGCTCTTACCAGAAACTGAAAGAGAAAAATTACTTTTCAAGGAAGCAGAAGTAAGAAATAATCTGAGGAAAAGATCAAGAGGAGGACAAAAAAGTTTCTTTGAGAATGGAGAAGTAAATAGACTTGAAACACTGTTGGCCGAGGGAAGGATCTTCTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCAGAGGGATACCCGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTCGGAGGATTTCGGATGCACCGAGCTTTTGAATTGGCTTTCTCCACAGCGTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTAATCCTGATCAGCCCCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCAGAACTCAGGCCCAGTGAGGTGTCAAATACATTTTATTTCACTTTCACAGTACGTTCCGAGGCAAAGGCCACGAAAAATGGATTTAGGATACGGAATATGGTTCCAGCAACAGAAGAAGAAGCACGACGTATACTAGAGCGCAAGGATGCTCAGGCCTTGCTTTCATCAACAAATAAACACGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

353

Amino Acids

40.23

Weight (kDa)

6.63

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1003
AciI	CCGC	3 cut(s)	211, 595, 787
AclWI	GGATC	4 cut(s)	104, 117, 545, 656
AcoI	YGGCCR	2 cut(s)	212, 525
AcuI	CTGAAG	2 cut(s)	275, 566
AfaI	GTAC	1 cut(s)	924
AfiI	CCNNNNNNNGG	2 cut(s)	366, 534
AgsI	TTSAA	7 cut(s)	242, 275, 427, 515, 683, 793, 848
AjnI	CCWGG	1 cut(s)	866
AluBI	AGCT	2 cut(s)	164, 677
AluI	AGCT	2 cut(s)	164, 677
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	4 cut(s)	104, 117, 545, 656
AlwNI	CAGNNNCTG	2 cut(s)	404, 835
AoxI	GGCC	7 cut(s)	212, 525, 715, 869, 881, 939, 1026
ApeKI	GCWGC	2 cut(s)	374, 721
Asp700I	GAANNNNTTC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	1014
AspS9I	GGNCC	1 cut(s)	882
BamHI	GGATCC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	361, 708
BciT130I	CCWGG	1 cut(s)	868
BciVI	GTATCC	2 cut(s)	583, 954
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	4 cut(s)	161, 351, 734, 1007
BfuI	GTATCC	2 cut(s)	583, 954
BisI	GCNGC	3 cut(s)	212, 375, 722
BlsI	GCNGC	3 cut(s)	213, 376, 723
Bme1390I	CCNGG	1 cut(s)	868
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	3 cut(s)	111, 169, 975
BmrFI	CCNGG	1 cut(s)	868
BmrI	ACTGGG	1 cut(s)	879
BmsI	GCATC	4 cut(s)	145, 242, 657, 1009
BmuI	ACTGGG	1 cut(s)	879
BpmI	CTGGAG	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	1 cut(s)	778
BsaI	GGTCTC	1 cut(s)	754
BsaJI	CCNNGG	5 cut(s)	113, 528, 558, 640, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 534
Bse1I	ACTGG	2 cut(s)	380, 885
BseBI	CCWGG	1 cut(s)	868
BseDI	CCNNGG	5 cut(s)	113, 528, 558, 640, 930
BseGI	GGATG	4 cut(s)	636, 672, 775, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	366, 534
BseMII	CTCAG	3 cut(s)	443, 892, 1037
BseNI	ACTGG	2 cut(s)	380, 885
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	361, 708
BshFI	GGCC	7 cut(s)	214, 527, 717, 871, 883, 941, 1028
BslI	CCNNNNNNNGG	2 cut(s)	366, 534
BsmAI	GTCTC	1 cut(s)	754
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	7 cut(s)	214, 527, 717, 871, 883, 941, 1028
Bso31I	GGTCTC	1 cut(s)	754
Bsp143I	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	3 cut(s)	211, 595, 787
BspANI	GGCC	7 cut(s)	214, 527, 717, 871, 883, 941, 1028
BspCNI	CTCAG	3 cut(s)	444, 891, 1036
BspHI	TCATGA	1 cut(s)	1058
BspLI	GGNNCC	3 cut(s)	111, 169, 975
BspPI	GGATC	4 cut(s)	104, 117, 545, 656
BspTNI	GGTCTC	1 cut(s)	754
BsrI	ACTGG	2 cut(s)	380, 885
BssECI	CCNNGG	5 cut(s)	113, 528, 558, 640, 930
BssMI	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
BssNAI	GTATAC	1 cut(s)	1004
BssT1I	CCWWGG	3 cut(s)	113, 558, 640
Bst1107I	GTATAC	1 cut(s)	1004
Bst2UI	CCWGG	1 cut(s)	868
Bst4CI	ACNGT	2 cut(s)	522, 922
BstC8I	GCNNGC	3 cut(s)	555, 715, 719
BstDEI	CTNAG	5 cut(s)	78, 452, 598, 878, 1023
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	4 cut(s)	636, 672, 775, 1024
BstHHI	GCGC	1 cut(s)	1014
BstKTI	GATC	8 cut(s)	112, 196, 464, 540, 615, 651, 745, 829
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 259
BstNI	CCWGG	1 cut(s)	868
BstSCI	CCNGG	1 cut(s)	866
BstV1I	GCAGC	2 cut(s)	361, 708
BstX2I	RGATCY	3 cut(s)	109, 537, 648
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	3 cut(s)	109, 537, 648
BstZ17I	GTATAC	1 cut(s)	1004
BsuI	GTATCC	2 cut(s)	583, 954
BsuRI	GGCC	7 cut(s)	214, 527, 717, 871, 883, 941, 1028
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	4 cut(s)	636, 672, 775, 1024
BtsI	GCAGTG	2 cut(s)	184, 228
BtsIMutI	CAGTG	4 cut(s)	184, 228, 518, 892
Cac8I	GCNNGC	3 cut(s)	555, 715, 719
CaiI	CAGNNNCTG	2 cut(s)	404, 835
CciI	TCATGA	1 cut(s)	1058
CfoI	GCGC	1 cut(s)	1014
Cfr13I	GGNCC	1 cut(s)	882
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	923
CviAII	CATG	4 cut(s)	641, 746, 860, 1059
CviQI	GTAC	1 cut(s)	923
DdeI	CTNAG	5 cut(s)	78, 452, 598, 878, 1023
DpnI	GATC	8 cut(s)	111, 195, 463, 539, 614, 650, 744, 828
DpnII	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
EaeI	YGGCCR	2 cut(s)	212, 525
Eco130I	CCWWGG	3 cut(s)	113, 558, 640
Eco147I	AGGCCT	1 cut(s)	1028
Eco31I	GGTCTC	1 cut(s)	754
Eco57I	CTGAAG	2 cut(s)	275, 566
EcoRII	CCWGG	1 cut(s)	866
EcoT14I	CCWWGG	3 cut(s)	113, 558, 640
ErhI	CCWWGG	3 cut(s)	113, 558, 640
FaeI	CATG	4 cut(s)	644, 749, 863, 1062
FatI	CATG	4 cut(s)	640, 745, 859, 1058
FauI	CCCGC	1 cut(s)	602
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	1003
Fnu4HI	GCNGC	3 cut(s)	212, 375, 722
FokI	GGATG	4 cut(s)	623, 679, 782, 1031
Fsp4HI	GCNGC	3 cut(s)	212, 375, 722
FspBI	CTAG	4 cut(s)	161, 351, 734, 1007
GlaI	GCGC	1 cut(s)	1013
GluI	GCNGC	3 cut(s)	212, 375, 722
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	7 cut(s)	214, 527, 717, 871, 883, 941, 1028
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	1014
Hin1II	CATG	4 cut(s)	644, 749, 863, 1062
Hin6I	GCGC	1 cut(s)	1012
HinP1I	GCGC	1 cut(s)	1012
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	3 cut(s)	314, 356, 1055
Hpy166II	GTNNAC	2 cut(s)	751, 1004
Hpy188I	TCNGA	9 cut(s)	109, 304, 313, 453, 585, 648, 656, 666, 931
Hpy188III	TCNNGA	6 cut(s)	197, 465, 734, 757, 824, 1059
Hpy8I	GTNNAC	2 cut(s)	751, 1004
Hpy99I	CGWCG	1 cut(s)	1002
HpyAV	CCTTC	2 cut(s)	364, 528
HpyCH4III	ACNGT	2 cut(s)	522, 922
HpyCH4IV	ACGT	2 cut(s)	925, 1000
HpyCH4V	TGCA	2 cut(s)	233, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 259
HpyF3I	CTNAG	5 cut(s)	78, 452, 598, 878, 1023
HpySE526I	ACGT	2 cut(s)	925, 1000
Hsp92II	CATG	4 cut(s)	644, 749, 863, 1062
HspAI	GCGC	1 cut(s)	1012
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
LmnI	GCTCC	3 cut(s)	13, 97, 382
Lsp1109I	GCAGC	2 cut(s)	361, 708
LweI	GCATC	4 cut(s)	145, 242, 657, 1009
MaeI	CTAG	4 cut(s)	161, 351, 734, 1007
MaeII	ACGT	2 cut(s)	925, 1000
MaeIII	GTNAC	3 cut(s)	226, 353, 862
MalI	GATC	8 cut(s)	111, 195, 463, 539, 614, 650, 744, 828
MboI	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
MboII	GAAGA	6 cut(s)	268, 532, 572, 643, 998, 1001
MflI	RGATCY	3 cut(s)	109, 537, 648
MluCI	AATT	9 cut(s)	23, 60, 70, 129, 264, 307, 385, 416, 683
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	626, 754
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	2 cut(s)	384, 819
MslI	CAYNNNNRTG	2 cut(s)	189, 344
MspR9I	CCNGG	1 cut(s)	868
Mva1269I	GAATGC	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	868
MwoI	GCNNNNNNNGC	2 cut(s)	220, 259
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
NlaIII	CATG	4 cut(s)	644, 749, 863, 1062
NlaIV	GGNNCC	3 cut(s)	111, 169, 975
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	226, 353
PagI	TCATGA	1 cut(s)	1058
PceI	AGGCCT	1 cut(s)	1028
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PctI	GAATGC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	314, 1055
PkrI	GCNGC	3 cut(s)	213, 376, 723
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	866
PspGI	CCWGG	1 cut(s)	866
PspN4I	GGNNCC	3 cut(s)	111, 169, 975
PspPI	GGNCC	1 cut(s)	882
PstNI	CAGNNNCTG	2 cut(s)	404, 835
PsuI	RGATCY	3 cut(s)	109, 537, 648
RsaI	GTAC	1 cut(s)	924
RsaNI	GTAC	1 cut(s)	923
RseI	CAYNNNNRTG	2 cut(s)	189, 344
SaqAI	TTAA	2 cut(s)	384, 819
SatI	GCNGC	3 cut(s)	212, 375, 722
Sau3AI	GATC	8 cut(s)	109, 193, 461, 537, 612, 648, 742, 826
Sau96I	GGNCC	1 cut(s)	882
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	868
SetI	ASST	9 cut(s)	153, 166, 283, 679, 741, 766, 894, 928, 1003
SfaNI	GCATC	4 cut(s)	145, 242, 657, 1009
SmiMI	CAYNNNNRTG	2 cut(s)	189, 344
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
Sse9I	AATT	9 cut(s)	23, 60, 70, 129, 264, 307, 385, 416, 683
SseBI	AGGCCT	1 cut(s)	1028
SsiI	CCGC	3 cut(s)	211, 595, 787
SspMI	CTAG	4 cut(s)	161, 351, 734, 1007
StuI	AGGCCT	1 cut(s)	1028
StyD4I	CCNGG	1 cut(s)	866
StyI	CCWWGG	3 cut(s)	113, 558, 640
TaaI	ACNGT	2 cut(s)	522, 922
TaiI	ACGT	2 cut(s)	928, 1003
TaqI	TCGA	1 cut(s)	741
TasI	AATT	9 cut(s)	23, 60, 70, 129, 264, 307, 385, 416, 683
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	314, 1055
Tru1I	TTAA	2 cut(s)	384, 819
Tru9I	TTAA	2 cut(s)	384, 819
TscAI	CASTG	4 cut(s)	191, 235, 525, 892
TseFI	GTSAC	2 cut(s)	226, 353
TseI	GCWGC	2 cut(s)	374, 721
Tsp45I	GTSAC	2 cut(s)	226, 353
TspDTI	ATGAA	2 cut(s)	328, 1026
TspGWI	ACGGA	1 cut(s)	979
TspRI	CASTG	4 cut(s)	191, 235, 525, 892
XbaI	TCTAGA	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	1003
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	4 cut(s)	161, 351, 734, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.