Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

44105364 .. 44109435

Gene Structure 4072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG252400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGACCCAAACTCATCTCCTTCCAATTCCAACACCACCATTCCGGTAGTGGCAACCCTCCCTGCTTACGGGTCGGACTCTTTGACCCGGAAGCCCATCAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACCAAGGCACTGTGGGAAGCGAGGTCTCACATGTTCGAGAGGCTGTTGGACCCACCAGTGGACGCTCCTCCACAGAGCCAATTGCTGAACAAGACTCCATCTCAGAGCAGGACTACAATTCTGTACAATTTCTCTACTGATTTTATACTGAGGGAGCAGTACAGGGATCCTTGGAATGAGGTCCGAATTGGGAAACTGCTTGAAGACCTTGATGCTTTAGCTGGAACCATTTCCGTCAAGCACTGCTATGCTGTTGATACCACAACGAGGCCACTCTTGCTGGTCACTGCATCTGTTGACAAGATTGTCTTGAAGAAGCCGATTAGTGTTGACATTGACTTGAAAATAGTTGGTGCTGTCATATGGGTGGGGCGATCATCTATTGAGATCCAACTAGAAGTTACTCAATCCACAAAAGGCTGTGACAATTCCAACTCATTAGCCCTTTCAGCCAACTTCATATTTGTGGCTCGTGACTCTAAGACTGGGAAGGCTGCTCCAGTTAATAGGCTCTTACCAGAAACTGAAAGAGAACAATTGCTTTTCAAGGAAGCAGAAACCAGAAATACTCTGAGGAAGAGAACGAAAGGAGGAGAAAAAAGGGAGTTTGAGAATGGAGAAGTAAATAGACTTGAAAGCCTGTTGGCGGAGGGAAGGATCTTTTGTGATATGCCTGCCTTGGCAGACAGAGATAGCATTCTTCTGAGGGATACCAGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTTGGAGGATTTTTAATGCACAGAGCATTTGAATTGGCTTTCTCCACAGCTTATGCTTTTGCTGGCCTGGTGCCTTGCTTTCTAGAAGTCGATCACGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGTTTCAAATCTTGTGTTCTCTACACAGAAGTTAATCCAGATCACCCTCTGATTACTATTGAAGTTGTTGCTCATGTTACCAGGCCTGAGCTCAGGTCCAGTGAGGTATGTTCCTACCAACTGCACATTAAAAACATGAAAGTTAAATCTTTAGCTTTAAATCGACTGCCTTTTGAATTTAAGACATGCATATCTTTACAATCTCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

416

Amino Acids

46.74

Weight (kDa)

7.14

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	973
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	5 cut(s)	293, 306, 514, 797, 908
AcsI	RAATTY	1 cut(s)	1214
AfaI	GTAC	2 cut(s)	257, 293
AfiI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	9 cut(s)	335, 445, 475, 679, 767, 935, 1045, 1100, 1214
AjnI	CCWGG	2 cut(s)	969, 1118
AluBI	AGCT	6 cut(s)	102, 353, 849, 953, 1129, 1193
AluI	AGCT	6 cut(s)	102, 353, 849, 953, 1129, 1193
Alw21I	GWGCWC	1 cut(s)	1131
Alw26I	GTCTC	2 cut(s)	162, 1006
AlwI	GGATC	5 cut(s)	293, 306, 514, 797, 908
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	4 cut(s)	107, 401, 967, 1121
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	1 cut(s)	1214
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	5 cut(s)	4, 108, 181, 313, 1134
AsuC2I	CCSGG	2 cut(s)	88, 111
AsuHPI	GGTGA	2 cut(s)	142, 1073
AvaII	GGWCC	4 cut(s)	4, 181, 313, 1134
BamHI	GGATCC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	1131
BauI	CACGAG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	1131
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	104, 238
BciT130I	CCWGG	2 cut(s)	971, 1120
BciVI	GTATCC	1 cut(s)	835
BcnI	CCSGG	2 cut(s)	88, 111
BcoDI	GTCTC	2 cut(s)	162, 1006
BfaI	CTAG	2 cut(s)	527, 986
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
Bme1390I	CCNGG	4 cut(s)	88, 111, 971, 1120
Bme18I	GGWCC	4 cut(s)	4, 181, 313, 1134
BmgT120I	GGNCC	5 cut(s)	4, 108, 181, 313, 1134
BmiI	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
BmrFI	CCNGG	4 cut(s)	88, 111, 971, 1120
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	2 cut(s)	334, 431
BmuI	ACTGGG	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	2 cut(s)	1125, 1130
BpuEI	CTTGAG	1 cut(s)	1030
BpuMI	CCSGG	2 cut(s)	88, 111
BsaI	GGTCTC	2 cut(s)	162, 1006
BsaJI	CCNNGG	4 cut(s)	135, 302, 810, 892
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	4 cut(s)	188, 622, 632, 1137
BseBI	CCWGG	2 cut(s)	971, 1120
BseDI	CCNNGG	4 cut(s)	135, 302, 810, 892
BseGI	GGATG	2 cut(s)	888, 1027
BseLI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
BseMII	CTCAG	6 cut(s)	248, 272, 695, 827, 1116, 1144
BseNI	ACTGG	4 cut(s)	188, 622, 632, 1137
BseRI	GAGGAG	2 cut(s)	189, 738
BseXI	GCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	1145
BshFI	GGCC	4 cut(s)	109, 403, 969, 1123
BshNI	GGYRCC	1 cut(s)	973
BsiHKAI	GWGCWC	1 cut(s)	1131
BsiSI	CCGG	4 cut(s)	44, 88, 111, 128
BslI	CCNNNNNNNGG	5 cut(s)	68, 127, 190, 399, 778
BsmAI	GTCTC	2 cut(s)	162, 1006
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	4 cut(s)	109, 403, 969, 1123
Bso31I	GGTCTC	2 cut(s)	162, 1006
Bsp1286I	GDGCHC	1 cut(s)	1131
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	4 cut(s)	109, 403, 969, 1123
BspCNI	CTCAG	6 cut(s)	247, 273, 696, 828, 1117, 1143
BspLI	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
BspPI	GGATC	5 cut(s)	293, 306, 514, 797, 908
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	2 cut(s)	162, 1006
BsrFI	RCCGGY	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	4 cut(s)	188, 622, 632, 1137
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	135, 302, 810, 892
BssMI	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
BssSI	CACGAG	1 cut(s)	603
BssT1I	CCWWGG	4 cut(s)	135, 302, 810, 892
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	971, 1120
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	704
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	807, 967
BstDEI	CTNAG	8 cut(s)	234, 281, 612, 704, 836, 850, 1125, 1130
BstDSI	CCRYGG	1 cut(s)	892
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	2 cut(s)	888, 1027
BstKTI	GATC	8 cut(s)	301, 509, 522, 792, 867, 903, 997, 1081
BstMAI	GTCTC	2 cut(s)	162, 1006
BstMBI	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 581
BstNI	CCWGG	2 cut(s)	971, 1120
BstNSI	RCATGY	2 cut(s)	166, 1227
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	86, 109, 969, 1118
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	4 cut(s)	298, 519, 789, 900
BstYI	RGATCY	4 cut(s)	298, 519, 789, 900
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	4 cut(s)	109, 403, 969, 1123
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	2 cut(s)	888, 1027
BtsI	GCAGTG	2 cut(s)	373, 417
BtsIMutI	CAGTG	5 cut(s)	140, 195, 373, 417, 1144
Cac8I	GCNNGC	2 cut(s)	807, 967
CaiI	CAGNNNCTG	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	5 cut(s)	4, 108, 181, 313, 1134
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	256, 292
CviAII	CATG	6 cut(s)	163, 893, 1112, 1174, 1224, 1244
CviQI	GTAC	2 cut(s)	256, 292
DdeI	CTNAG	8 cut(s)	234, 281, 612, 704, 836, 850, 1125, 1130
DpnI	GATC	8 cut(s)	300, 508, 521, 791, 866, 902, 996, 1080
DpnII	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
DraI	TTTAAA	1 cut(s)	1197
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
EciI	GGCGGA	1 cut(s)	794
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	4 cut(s)	135, 302, 810, 892
Eco147I	AGGCCT	1 cut(s)	1123
Eco24I	GRGCYC	1 cut(s)	1131
Eco31I	GGTCTC	2 cut(s)	162, 1006
Eco47I	GGWCC	4 cut(s)	4, 181, 313, 1134
Eco53kI	GAGCTC	1 cut(s)	1129
Eco91I	GGTNACC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	1129
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	969, 1118
EcoT14I	CCWWGG	4 cut(s)	135, 302, 810, 892
EcoT22I	ATGCAT	1 cut(s)	1229
EcoT38I	GRGCYC	1 cut(s)	1131
ErhI	CCWWGG	4 cut(s)	135, 302, 810, 892
FaeI	CATG	6 cut(s)	166, 896, 1115, 1177, 1227, 1247
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	6 cut(s)	162, 892, 1111, 1173, 1223, 1243
FauNDI	CATATG	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	875, 1034
FriOI	GRGCYC	1 cut(s)	1131
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	527, 986
GluI	GCNGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	109, 403, 969, 1123
HapII	CCGG	4 cut(s)	44, 88, 111, 128
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	166, 896, 1115, 1177, 1227, 1247
HincII	GTYRAC	3 cut(s)	430, 463, 1003
HindII	GTYRAC	3 cut(s)	430, 463, 1003
HinfI	GANTC	3 cut(s)	77, 226, 608
HpaII	CCGG	4 cut(s)	44, 88, 111, 128
HphI	GGTGA	2 cut(s)	142, 1073
Hpy166II	GTNNAC	4 cut(s)	193, 430, 463, 1003
Hpy188I	TCNGA	7 cut(s)	76, 237, 317, 705, 837, 900, 1089
Hpy188III	TCNNGA	6 cut(s)	169, 442, 605, 986, 1009, 1076
Hpy8I	GTNNAC	4 cut(s)	193, 430, 463, 1003
HpyAV	CCTTC	3 cut(s)	30, 616, 780
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	1 cut(s)	999
HpyCH4V	TGCA	4 cut(s)	422, 922, 1162, 1227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 581
HpyF3I	CTNAG	8 cut(s)	234, 281, 612, 704, 836, 850, 1125, 1130
HpySE526I	ACGT	1 cut(s)	999
Hsp92II	CATG	6 cut(s)	166, 896, 1115, 1177, 1227, 1247
Kzo9I	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
LmnI	GCTCC	3 cut(s)	202, 286, 634
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	334, 431
MaeI	CTAG	2 cut(s)	527, 986
MaeII	ACGT	1 cut(s)	999
MaeIII	GTNAC	6 cut(s)	130, 415, 532, 554, 605, 1114
MalI	GATC	8 cut(s)	300, 508, 521, 791, 866, 902, 996, 1080
MboI	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
MboII	GAAGA	4 cut(s)	347, 457, 721, 824
MfeI	CAATTG	2 cut(s)	212, 668
MflI	RGATCY	4 cut(s)	298, 519, 789, 900
MhlI	GDGCHC	1 cut(s)	1131
MluCI	AATT	9 cut(s)	25, 212, 249, 259, 318, 559, 668, 935, 1214
MlyI	GAGTC	3 cut(s)	71, 220, 602
MmeI	TCCRAC	7 cut(s)	54, 54, 159, 547, 588, 878, 1006
Mph1103I	ATGCAT	1 cut(s)	1229
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	7 cut(s)	636, 917, 1071, 1167, 1182, 1196, 1218
MslI	CAYNNNNRTG	3 cut(s)	378, 497, 596
MspI	CCGG	4 cut(s)	44, 88, 111, 128
MspR9I	CCNGG	4 cut(s)	88, 111, 971, 1120
MunI	CAATTG	2 cut(s)	212, 668
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	971, 1120
MwoI	GCNNNNNNNGC	2 cut(s)	409, 581
NciI	CCSGG	2 cut(s)	88, 111
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
NlaIII	CATG	6 cut(s)	166, 896, 1115, 1177, 1227, 1247
NlaIV	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
NmuCI	GTSAC	4 cut(s)	130, 415, 554, 605
NsiI	ATGCAT	1 cut(s)	1229
NspI	RCATGY	2 cut(s)	166, 1227
PceI	AGGCCT	1 cut(s)	1123
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	3 cut(s)	71, 220, 602
PpsI	GAGTC	3 cut(s)	71, 220, 602
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	1131
Psp6I	CCWGG	2 cut(s)	969, 1118
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	2 cut(s)	969, 1118
PspN4I	GGNNCC	5 cut(s)	6, 183, 300, 358, 975
PspPI	GGNCC	5 cut(s)	4, 108, 181, 313, 1134
PstNI	CAGNNNCTG	1 cut(s)	656
PsuI	RGATCY	4 cut(s)	298, 519, 789, 900
RsaI	GTAC	2 cut(s)	257, 293
RsaNI	GTAC	2 cut(s)	256, 292
RseI	CAYNNNNRTG	3 cut(s)	378, 497, 596
SacI	GAGCTC	1 cut(s)	1131
SaqAI	TTAA	7 cut(s)	636, 917, 1071, 1167, 1182, 1196, 1218
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	8 cut(s)	298, 506, 519, 789, 864, 900, 994, 1078
Sau96I	GGNCC	5 cut(s)	4, 108, 181, 313, 1134
SchI	GAGTC	3 cut(s)	71, 220, 602
ScrFI	CCNGG	4 cut(s)	88, 111, 971, 1120
SduI	GDGCHC	1 cut(s)	1131
SfaNI	GCATC	2 cut(s)	334, 431
SgrAI	CRCCGGYG	1 cut(s)	127
SinI	GGWCC	4 cut(s)	4, 181, 313, 1134
SmiMI	CAYNNNNRTG	3 cut(s)	378, 497, 596
SmlI	CTYRAG	1 cut(s)	1009
SmoI	CTYRAG	1 cut(s)	1009
Sse9I	AATT	9 cut(s)	25, 212, 249, 259, 318, 559, 668, 935, 1214
SseBI	AGGCCT	1 cut(s)	1123
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	2 cut(s)	527, 986
SstI	GAGCTC	1 cut(s)	1131
StuI	AGGCCT	1 cut(s)	1123
StyD4I	CCNGG	4 cut(s)	86, 109, 969, 1118
StyI	CCWWGG	4 cut(s)	135, 302, 810, 892
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	1002
TaqI	TCGA	3 cut(s)	168, 993, 1201
TasI	AATT	9 cut(s)	25, 212, 249, 259, 318, 559, 668, 935, 1214
TatI	WGTACW	2 cut(s)	255, 291
Tru1I	TTAA	7 cut(s)	636, 917, 1071, 1167, 1182, 1196, 1218
Tru9I	TTAA	7 cut(s)	636, 917, 1071, 1167, 1182, 1196, 1218
TscAI	CASTG	5 cut(s)	147, 195, 380, 424, 1144
TseFI	GTSAC	4 cut(s)	130, 415, 554, 605
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	4 cut(s)	130, 415, 554, 605
TspDTI	ATGAA	2 cut(s)	580, 1190
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	5 cut(s)	147, 195, 380, 424, 1144
VpaK11BI	GGWCC	4 cut(s)	4, 181, 313, 1134
XapI	RAATTY	1 cut(s)	1214
XbaI	TCTAGA	1 cut(s)	985
XceI	RCATGY	2 cut(s)	166, 1227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	2 cut(s)	527, 986
Zsp2I	ATGCAT	1 cut(s)	1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.