Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003743

Physical Location & Seq

Genomic Coordinates Reverse (-)

44141082 .. 44143428

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G022310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGCTCGACTTCATGTCCTTCCAACTCCAACACCACCATTCCGGTAGTGTCAACCTTATCTTCTTTGGAGATCCCATCTTCGGGTCACAAAAGGTCCGATCCTTCACCCCAAATGCCCATTAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACAATGGCACTGTGGCATGCAAGGACTAAGAAGTTGGAGAGGCTCTTTCTGGACCCGCCAATGGACGCTCCTCCACAAAGCGAATTGCTCAACAAAACTCCCTCGCAGAGCAGGACTACAATTCTCTATAATTTCTCTAAGGATTATACATTGAGGGAGCAGTATTCGGATCCTTGGAATGAGGGTAGAATTGGGAAGTTGCTCAAAGACCTTGATGCTCTAGCTGGAACCATTTCTGTCAAGCACTGCTATGATCTTGACAGCACAATGCGGCCACTCTTGCTGGTCACTGCATCTGTTGAAAACATTGTGCTGAAGAAGCCAATTAGTGTTGAAAGACCTGAAAATAAAGTCTCTGACAATTCGGATTCTTTAGTCCTTTCAGCCAACTTCATATTTGCGGCTAGTGACTCTAAGAATGGGAAGGCTGCTCCAGTTAATTGGCTCTTACCAGAAACTGAAAGAGAAAAATTACTTTTCAAGGAAGCAGAAGTAAGAAATAATCTGAGGAAAAGATCAAGAGGAGGACAAAAAAGTTTCTTTGAGAATGGAGAAGTAAATAGACTTGAAACACTGTTGGCCGAGGGAAGGATCTTCTGTGATATGCCTGCCTTGGCAGGCAGAGATAGCATTCTTCAGAGGGATACCCGCTTAGAGAACTCATTGATCTGCCAACCACAGCAGAGAAACATCCATGGTCGGATCTTCGGAGGATTTCGGATGCACCGAGCTTTTGAATTGGCTTTCTCCACAGCTTATGCCTTTGCTGGCCTGCTGCCTTGCTTTCTAGAGGTCGATCATGTTGACTTCTTGAGACCTGTGGATGTTGGAGATTTCCTGCGGTTCAAATCTTGTGTTCTTTACACAGAAGTTGATCCTGATCAGCCCCTGATTACTATTGAAATTGTTGCTCATGTTACCAGGCCAGAACTCAGGTCCAGTGAGGTGTCAAATACATTTTATTTCACTTTCACAGTACGTCCCGAGGCAAAGGCCACGAAAAATGGATTTAGGATACGGAATGTGGTTCCAGCAACAGAAGATGAAGAAGCACGACGTATACTAGAGCGCAAGGATGCTCAGGCCTTGCTTTCATCAACAAATAAACACGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

424

Amino Acids

47.8

Weight (kDa)

7.66

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48370 AT5G48370 AT5G48370
fragaria_vesca	FvH4_2g17370 FvH4_2g17370 FvH4_6g02780
malus_domestica	MD05G1152600.v1.1 MD10G1147100.v1.1
prunus_persica	Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1 Prupe.8G185500_v2.0.a1
pyrus_communis	pycom05g14700 pycom10g12680
rosa_chinensis	RchiOBHm_Chr6g0282011 RchiOBHm_Chr6g0282021
rosa_laevigata	RLG00000012919 RLG00000012920
rosa_multiflora	Rmu_sc0000569.1_g000002 Rmu_sc0000569.1_g000003 Rmu_sc0001700.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186630 Rroxscaffold_7G00186640
rosa_rugosa	Rorug06G0144800 Rorug06G0144900
rosa_samantha	Rh6AG258000 Rh6AG258100 Rh6BG261000 Rh6BG261100 Rh6CG259900 Rh6CG260000 Rh6DG252300 Rh6DG252400
rosa_wichuraiana	Rw6G022310 Rw6G022320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1216
AciI	CCGC	5 cut(s)	212, 427, 557, 805, 997
AclWI	GGATC	7 cut(s)	67, 95, 320, 333, 755, 866, 1025
AcoI	YGGCCR	2 cut(s)	428, 735
AcuI	CTGAAG	2 cut(s)	491, 776
AfaI	GTAC	1 cut(s)	1134
AfiI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 744
AgsI	TTSAA	7 cut(s)	458, 491, 637, 725, 893, 1003, 1058
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	1076
AluBI	AGCT	4 cut(s)	126, 380, 887, 911
AluI	AGCT	4 cut(s)	126, 380, 887, 911
Alw26I	GTCTC	2 cut(s)	514, 964
AlwI	GGATC	7 cut(s)	67, 95, 320, 333, 755, 866, 1025
AlwNI	CAGNNNCTG	2 cut(s)	614, 1045
Ama87I	CYCGRG	1 cut(s)	1139
AoxI	GGCC	7 cut(s)	131, 428, 735, 925, 1079, 1149, 1239
ApeKI	GCWGC	2 cut(s)	584, 931
Asp700I	GAANNNNTTC	1 cut(s)	388
AspLEI	GCGC	1 cut(s)	1227
AspS9I	GGNCC	4 cut(s)	96, 132, 208, 1092
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	99, 166
AvaI	CYCGRG	1 cut(s)	1139
AvaII	GGWCC	3 cut(s)	96, 208, 1092
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	571, 918
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	1078
BciVI	GTATCC	2 cut(s)	793, 1164
BclI	TGATCA	1 cut(s)	1036
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	514, 964
BfaI	CTAG	4 cut(s)	377, 561, 944, 1220
BfuI	GTATCC	2 cut(s)	793, 1164
BisI	GCNGC	4 cut(s)	428, 558, 585, 932
BlsI	GCNGC	4 cut(s)	429, 559, 586, 933
Bme1390I	CCNGG	2 cut(s)	135, 1078
Bme18I	GGWCC	3 cut(s)	96, 208, 1092
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	1139
BmgT120I	GGNCC	4 cut(s)	96, 132, 208, 1092
BmiI	GGNNCC	4 cut(s)	210, 327, 385, 1185
BmrFI	CCNGG	2 cut(s)	135, 1078
BmsI	GCATC	4 cut(s)	361, 458, 867, 1222
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	1236
BpuEI	CTTGAG	1 cut(s)	988
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaI	GGTCTC	1 cut(s)	964
BsaJI	CCNNGG	5 cut(s)	329, 738, 768, 850, 1140
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 744
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	590, 1095
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	1 cut(s)	1078
BseDI	CCNNGG	5 cut(s)	329, 738, 768, 850, 1140
BseGI	GGATG	4 cut(s)	846, 882, 985, 1237
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 744
BseMII	CTCAG	3 cut(s)	653, 1102, 1250
BseNI	ACTGG	2 cut(s)	590, 1095
BseRI	GAGGAG	2 cut(s)	216, 693
BseXI	GCAGC	2 cut(s)	571, 918
BshFI	GGCC	7 cut(s)	133, 430, 737, 927, 1081, 1151, 1241
BsiHKCI	CYCGRG	1 cut(s)	1139
BsiSI	CCGG	3 cut(s)	44, 135, 152
BslFI	GGGAC	1 cut(s)	1122
BslI	CCNNNNNNNGG	5 cut(s)	82, 83, 151, 217, 744
BsmAI	GTCTC	2 cut(s)	514, 964
BsmFI	GGGAC	1 cut(s)	1122
BsmI	GAATGC	1 cut(s)	786
BsnI	GGCC	7 cut(s)	133, 430, 737, 927, 1081, 1151, 1241
Bso31I	GGTCTC	1 cut(s)	964
BsoBI	CYCGRG	1 cut(s)	1139
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	850
BspACI	CCGC	5 cut(s)	212, 427, 557, 805, 997
BspANI	GGCC	7 cut(s)	133, 430, 737, 927, 1081, 1151, 1241
BspCNI	CTCAG	3 cut(s)	654, 1101, 1249
BspHI	TCATGA	1 cut(s)	1271
BspLI	GGNNCC	4 cut(s)	210, 327, 385, 1185
BspPI	GGATC	7 cut(s)	67, 95, 320, 333, 755, 866, 1025
BspTNI	GGTCTC	1 cut(s)	964
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	590, 1095
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	5 cut(s)	329, 738, 768, 850, 1140
BssNAI	GTATAC	1 cut(s)	1217
BssT1I	CCWWGG	3 cut(s)	329, 768, 850
Bst1107I	GTATAC	1 cut(s)	1217
Bst2UI	CCWGG	1 cut(s)	1078
Bst4CI	ACNGT	3 cut(s)	168, 732, 1132
BstC8I	GCNNGC	5 cut(s)	174, 765, 775, 925, 929
BstDEI	CTNAG	7 cut(s)	183, 294, 570, 662, 808, 1088, 1236
BstDSI	CCRYGG	1 cut(s)	850
BstF5I	GGATG	4 cut(s)	846, 882, 985, 1237
BstHHI	GCGC	1 cut(s)	1227
BstMAI	GTCTC	2 cut(s)	514, 964
BstMWI	GCNNNNNNNGC	3 cut(s)	436, 475, 783
BstNI	CCWGG	1 cut(s)	1078
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	133, 1076
BstV1I	GCAGC	2 cut(s)	571, 918
BstX2I	RGATCY	4 cut(s)	72, 325, 747, 858
BstXI	CCANNNNNNTGG	1 cut(s)	597
BstYI	RGATCY	4 cut(s)	72, 325, 747, 858
BstZ17I	GTATAC	1 cut(s)	1217
BsuI	GTATCC	2 cut(s)	793, 1164
BsuRI	GGCC	7 cut(s)	133, 430, 737, 927, 1081, 1151, 1241
BtgI	CCRYGG	1 cut(s)	850
BtsCI	GGATG	4 cut(s)	846, 882, 985, 1237
BtsI	GCAGTG	2 cut(s)	400, 444
BtsIMutI	CAGTG	5 cut(s)	164, 400, 444, 728, 1102
Cac8I	GCNNGC	5 cut(s)	174, 765, 775, 925, 929
CaiI	CAGNNNCTG	2 cut(s)	614, 1045
CciI	TCATGA	1 cut(s)	1271
CfoI	GCGC	1 cut(s)	1227
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	4 cut(s)	96, 132, 208, 1092
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	1133
CviAII	CATG	6 cut(s)	15, 173, 851, 956, 1070, 1272
CviQI	GTAC	1 cut(s)	1133
DdeI	CTNAG	7 cut(s)	183, 294, 570, 662, 808, 1088, 1236
DriI	GACNNNNNGTC	1 cut(s)	15
EaeI	YGGCCR	2 cut(s)	428, 735
Eam1105I	GACNNNNNGTC	1 cut(s)	15
Eco130I	CCWWGG	3 cut(s)	329, 768, 850
Eco147I	AGGCCT	1 cut(s)	1241
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	964
Eco47I	GGWCC	3 cut(s)	96, 208, 1092
Eco57I	CTGAAG	2 cut(s)	491, 776
Eco88I	CYCGRG	1 cut(s)	1139
EcoRII	CCWGG	1 cut(s)	1076
EcoT14I	CCWWGG	3 cut(s)	329, 768, 850
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	3 cut(s)	329, 768, 850
FaeI	CATG	6 cut(s)	18, 176, 854, 959, 1073, 1275
FaqI	GGGAC	1 cut(s)	1122
FatI	CATG	6 cut(s)	14, 172, 850, 955, 1069, 1271
FauI	CCCGC	2 cut(s)	219, 812
FbaI	TGATCA	1 cut(s)	1036
FblI	GTMKAC	1 cut(s)	1216
Fnu4HI	GCNGC	4 cut(s)	428, 558, 585, 932
FokI	GGATG	4 cut(s)	833, 889, 992, 1244
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	428, 558, 585, 932
FspBI	CTAG	4 cut(s)	377, 561, 944, 1220
GlaI	GCGC	1 cut(s)	1226
GluI	GCNGC	4 cut(s)	428, 558, 585, 932
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	7 cut(s)	133, 430, 737, 927, 1081, 1151, 1241
HapII	CCGG	3 cut(s)	44, 135, 152
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	1227
Hin1II	CATG	6 cut(s)	18, 176, 854, 959, 1073, 1275
Hin6I	GCGC	1 cut(s)	1225
HinP1I	GCGC	1 cut(s)	1225
HincII	GTYRAC	2 cut(s)	54, 961
HindII	GTYRAC	2 cut(s)	54, 961
HinfI	GANTC	3 cut(s)	524, 566, 1268
HpaII	CCGG	3 cut(s)	44, 135, 152
HphI	GGTGA	2 cut(s)	99, 166
Hpy166II	GTNNAC	3 cut(s)	54, 961, 1217
Hpy188I	TCNGA	9 cut(s)	100, 325, 514, 523, 663, 795, 858, 866, 876
Hpy188III	TCNNGA	8 cut(s)	206, 413, 675, 944, 967, 1034, 1139, 1272
Hpy8I	GTNNAC	3 cut(s)	54, 961, 1217
Hpy99I	CGWCG	1 cut(s)	1215
HpyAV	CCTTC	4 cut(s)	30, 114, 574, 738
HpyCH4III	ACNGT	3 cut(s)	168, 732, 1132
HpyCH4IV	ACGT	2 cut(s)	1135, 1213
HpyCH4V	TGCA	3 cut(s)	176, 449, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	436, 475, 783
HpyF3I	CTNAG	7 cut(s)	183, 294, 570, 662, 808, 1088, 1236
HpySE526I	ACGT	2 cut(s)	1135, 1213
Hsp92II	CATG	6 cut(s)	18, 176, 854, 959, 1073, 1275
HspAI	GCGC	1 cut(s)	1225
Ksp22I	TGATCA	1 cut(s)	1036
LmnI	GCTCC	3 cut(s)	229, 313, 592
Lsp1109I	GCAGC	2 cut(s)	571, 918
LweI	GCATC	4 cut(s)	361, 458, 867, 1222
MaeI	CTAG	4 cut(s)	377, 561, 944, 1220
MaeII	ACGT	2 cut(s)	1135, 1213
MaeIII	GTNAC	5 cut(s)	86, 154, 442, 563, 1072
MboII	GAAGA	8 cut(s)	54, 72, 484, 742, 782, 853, 1208, 1214
MflI	RGATCY	4 cut(s)	72, 325, 747, 858
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	5 cut(s)	48, 54, 171, 836, 964
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	3 cut(s)	44, 135, 152
MspR9I	CCNGG	2 cut(s)	135, 1078
Mva1269I	GAATGC	1 cut(s)	786
MvaI	CCWGG	1 cut(s)	1078
MwoI	GCNNNNNNNGC	3 cut(s)	436, 475, 783
NciI	CCSGG	1 cut(s)	135
NcoI	CCATGG	1 cut(s)	850
NlaIII	CATG	6 cut(s)	18, 176, 854, 959, 1073, 1275
NlaIV	GGNNCC	4 cut(s)	210, 327, 385, 1185
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	4 cut(s)	86, 154, 442, 563
NspI	RCATGY	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	1271
PceI	AGGCCT	1 cut(s)	1241
PcsI	WCGNNNNNNNCGW	1 cut(s)	880
PctI	GAATGC	1 cut(s)	786
PdmI	GAANNNNTTC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	524, 1268
PkrI	GCNGC	4 cut(s)	429, 559, 586, 933
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	1076
PspGI	CCWGG	1 cut(s)	1076
PspN4I	GGNNCC	4 cut(s)	210, 327, 385, 1185
PspPI	GGNCC	4 cut(s)	96, 132, 208, 1092
PstNI	CAGNNNCTG	2 cut(s)	614, 1045
PsuI	RGATCY	4 cut(s)	72, 325, 747, 858
RsaI	GTAC	1 cut(s)	1134
RsaNI	GTAC	1 cut(s)	1133
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	4 cut(s)	428, 558, 585, 932
Sau96I	GGNCC	4 cut(s)	96, 132, 208, 1092
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	2 cut(s)	135, 1078
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	4 cut(s)	361, 458, 867, 1222
SgrAI	CRCCGGYG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	96, 208, 1092
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
SphI	GCATGC	1 cut(s)	176
SseBI	AGGCCT	1 cut(s)	1241
SsiI	CCGC	5 cut(s)	212, 427, 557, 805, 997
SspMI	CTAG	4 cut(s)	377, 561, 944, 1220
StuI	AGGCCT	1 cut(s)	1241
StyD4I	CCNGG	2 cut(s)	133, 1076
StyI	CCWWGG	3 cut(s)	329, 768, 850
TaaI	ACNGT	3 cut(s)	168, 732, 1132
TaiI	ACGT	2 cut(s)	1138, 1216
TaqI	TCGA	2 cut(s)	8, 951
TauI	GCSGC	2 cut(s)	430, 560
TfiI	GAWTC	2 cut(s)	524, 1268
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	5 cut(s)	171, 407, 451, 735, 1102
TseFI	GTSAC	4 cut(s)	86, 154, 442, 563
TseI	GCWGC	2 cut(s)	584, 931
Tsp45I	GTSAC	4 cut(s)	86, 154, 442, 563
TspDTI	ATGAA	3 cut(s)	538, 1215, 1239
TspGWI	ACGGA	1 cut(s)	1189
TspRI	CASTG	5 cut(s)	171, 407, 451, 735, 1102
VpaK11BI	GGWCC	3 cut(s)	96, 208, 1092
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	1216
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	4 cut(s)	377, 561, 944, 1220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.