FvH4_6g20460

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
14102915 .. 14105061
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20460.t1

Sequence Viewer

Length: 912 bp
ATGAATGATCTGTTCTCGGGGTCGTTCTCGCGGTTCCGTAGCGAACCGGACAACAACGACGAGCACGTTATCGAGATGTCATCGGCGACCGGCACCGGCACCGGAGTCAATTTGGATAAGTTCTTCGGCGACGTGGAGTCCGTCAAGGACGAGCTGAAGGAGCTGGAGCGCATCCACCAGAACCTCCAGGCGGCTCACGAGCAGAGCAAGACGCTCCACAACGCCAACACCGTCAAGGACCTCCGATCTCGGATGGACGGTGACGTCACTCTCGCTCTCAAGAAGGCCAAAGTGATCAAGGTCCGCCTCGAGGCCTTGGATCGGTCCAACGCCGCCAATAGGAGCCAGCCGGGCTGCGGGCCGGGGTCGTCGTCTGACCGGACCAGGATCTCCGTCGTCAACGGCCTCCGGAAGAAGCTGAAAGACTCCATGGAGAGCTTCAACTCGCTCCGCCAGAAGATCTCTCTAGAGTACAGAGAGACCGTGCAGAGGAGATACTACACGGTCTCCGGCGAGAATCCCGACGAGAAAACTCTCGACCTGTTAATTTCCACCGGCCAGAGTGAAACGTTTCTGCAGAAGGCGATCCAGGAGCAAGGCCGGGGACAGGTGCTGGACACGATCAACGAGATCCAGGAGCGGCACGACGCTGTGAAAGACATGGAGAAGAATCTGCACGAGCTGCACCAGGTGTTCCTCGACATGGCGGTGTTGGTCCAAGCTCAAGGGGAGCAGCTGGACGACATAGAGAGCCATGTGCAGAGAGCCAGCTCGTTCGTCAGGGGAGGGACGCAGGAGCTGGGCAAGGCCAAGGTGTACCAGAGGAACACCCGCAAGTGGACTTGCTATTTAATCATACTGTTGTTGGTGATTGCTTTGATCATCATTTTGAGTTTGAAGCCGTGGAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

304

Amino Acids

34.28

Weight (kDa)

6.73

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 37 - 196 1.1e-51 Syntaxin
SNARE PF05739 244 - 296 2.3e-19 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 1 cut(s) 267
AbsI CCTCGAGG 1 cut(s) 308
AccB1I GGYRCC 2 cut(s) 92, 98
AccBSI CCGCTC 1 cut(s) 640
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 408
AciI CCGC 9 cut(s) 31, 191, 304, 333, 357, 451, 640, 707, 832
AclI AACGTT 1 cut(s) 569
AclWI GGATC 4 cut(s) 327, 395, 580, 625
AcoI YGGCCR 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 264
AdeI CACNNNGTG 1 cut(s) 691
AfaI GTAC 2 cut(s) 473, 818
AfiI CCNNNNNNNGG 9 cut(s) 190, 310, 321, 339, 356, 489, 607, 703, 837
AgsI TTSAA 2 cut(s) 442, 898
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 5 cut(s) 186, 383, 588, 633, 687
AluBI AGCT 9 cut(s) 154, 163, 418, 438, 682, 722, 736, 771, 799
AluI AGCT 9 cut(s) 154, 163, 418, 438, 682, 722, 736, 771, 799
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 2 cut(s) 473, 511
AlwI GGATC 4 cut(s) 327, 395, 580, 625
AlwNI CAGNNNCTG 2 cut(s) 613, 799
Ama87I CYCGRG 2 cut(s) 16, 308
Aor13HI TCCGGA 1 cut(s) 408
AoxI GGCC 7 cut(s) 285, 312, 359, 403, 556, 598, 807
ApeKI GCWGC 3 cut(s) 354, 682, 733
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 6 cut(s) 238, 301, 324, 359, 381, 715
AsuC2I CCSGG 3 cut(s) 351, 363, 602
AsuHPI GGTGA 2 cut(s) 272, 880
AvaI CYCGRG 2 cut(s) 16, 308
AvaII GGWCC 5 cut(s) 238, 301, 324, 381, 715
BanI GGYRCC 2 cut(s) 92, 98
BauI CACGAG 2 cut(s) 197, 677
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 341, 669, 745
BccI CCATC 1 cut(s) 247
BceAI ACGGC 2 cut(s) 418, 886
BciT130I CCWGG 5 cut(s) 188, 385, 590, 635, 689
BclI TGATCA 2 cut(s) 294, 879
BcnI CCSGG 3 cut(s) 351, 363, 602
BcoDI GTCTC 2 cut(s) 473, 511
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 351
BglII AGATCT 1 cut(s) 459
BisI GCNGC 6 cut(s) 192, 333, 355, 641, 683, 734
BlsI GCNGC 6 cut(s) 193, 334, 356, 642, 684, 735
Bme1390I CCNGG 8 cut(s) 188, 351, 363, 385, 590, 602, 635, 689
Bme18I GGWCC 5 cut(s) 238, 301, 324, 381, 715
BmeRI GACNNNNNGTC 1 cut(s) 136
BmeT110I CYCGRG 2 cut(s) 16, 308
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 6 cut(s) 238, 301, 324, 359, 381, 715
BmiI GGNNCC 4 cut(s) 35, 94, 100, 344
BmrFI CCNGG 8 cut(s) 188, 351, 363, 385, 590, 602, 635, 689
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 2 cut(s) 170, 185
BpuEI CTTGAG 2 cut(s) 263, 708
BpuMI CCSGG 3 cut(s) 351, 363, 602
BsaHI GRCGYC 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 473, 511
BsaJI CCNNGG 6 cut(s) 315, 362, 429, 601, 810, 902
BsaWI WCCGGW 4 cut(s) 46, 101, 378, 408
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 9 cut(s) 190, 310, 321, 339, 356, 489, 607, 703, 837
Bse118I RCCGGY 3 cut(s) 89, 95, 554
BseAI TCCGGA 1 cut(s) 408
BseBI CCWGG 5 cut(s) 188, 385, 590, 635, 689
BseDI CCNNGG 6 cut(s) 315, 362, 429, 601, 810, 902
BseGI GGATG 2 cut(s) 171, 258
BseLI CCNNNNNNNGG 9 cut(s) 190, 310, 321, 339, 356, 489, 607, 703, 837
BseRI GAGGAG 1 cut(s) 505
BseXI GCAGC 3 cut(s) 341, 669, 745
BseYI CCCAGC 1 cut(s) 799
BsgI GTGCAG 4 cut(s) 506, 659, 668, 779
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 7 cut(s) 287, 314, 361, 405, 558, 600, 809
BshNI GGYRCC 2 cut(s) 92, 98
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 2 cut(s) 16, 308
BslFI GGGAC 2 cut(s) 618, 802
BslI CCNNNNNNNGG 9 cut(s) 190, 310, 321, 339, 356, 489, 607, 703, 837
BsmAI GTCTC 2 cut(s) 473, 511
BsmFI GGGAC 2 cut(s) 618, 802
BsnI GGCC 7 cut(s) 287, 314, 361, 405, 558, 600, 809
Bso31I GGTCTC 2 cut(s) 473, 511
BsoBI CYCGRG 2 cut(s) 16, 308
Bsp1286I GDGCHC 1 cut(s) 66
Bsp13I TCCGGA 1 cut(s) 408
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 9 cut(s) 31, 191, 304, 333, 357, 451, 640, 707, 832
BspANI GGCC 7 cut(s) 287, 314, 361, 405, 558, 600, 809
BspEI TCCGGA 1 cut(s) 408
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 4 cut(s) 35, 94, 100, 344
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 4 cut(s) 327, 395, 580, 625
BspT107I GGYRCC 2 cut(s) 92, 98
BspTNI GGTCTC 2 cut(s) 473, 511
BsrBI CCGCTC 1 cut(s) 640
BsrFI RCCGGY 3 cut(s) 89, 95, 554
BssAI RCCGGY 3 cut(s) 89, 95, 554
BssECI CCNNGG 6 cut(s) 315, 362, 429, 601, 810, 902
BssNI GRCGYC 1 cut(s) 264
BssSI CACGAG 2 cut(s) 197, 677
BssT1I CCWWGG 3 cut(s) 315, 429, 810
Bst2BI CACGAG 2 cut(s) 197, 677
Bst2UI CCWGG 5 cut(s) 188, 385, 590, 635, 689
Bst4CI ACNGT 5 cut(s) 232, 260, 484, 505, 861
BstACI GRCGYC 1 cut(s) 264
BstAPI GCANNNNNTGC 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 347, 359, 769
BstDSI CCRYGG 2 cut(s) 429, 902
BstF5I GGATG 2 cut(s) 171, 258
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 473, 511
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 160, 351, 682
BstNI CCWGG 5 cut(s) 188, 385, 590, 635, 689
BstSCI CCNGG 8 cut(s) 186, 349, 361, 383, 588, 600, 633, 687
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 341, 669, 745
BstX2I RGATCY 3 cut(s) 387, 459, 630
BstYI RGATCY 3 cut(s) 387, 459, 630
BsuRI GGCC 7 cut(s) 287, 314, 361, 405, 558, 600, 809
BtgI CCRYGG 2 cut(s) 429, 902
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 171, 258
Cac8I GCNNGC 3 cut(s) 347, 359, 769
CaiI CAGNNNCTG 2 cut(s) 613, 799
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 3 cut(s) 89, 95, 554
Cfr13I GGNCC 6 cut(s) 238, 301, 324, 359, 381, 715
CseI GACGC 3 cut(s) 220, 656, 799
CsiI ACCWGGT 1 cut(s) 687
Csp6I GTAC 2 cut(s) 472, 817
CviAII CATG 4 cut(s) 430, 661, 703, 755
CviQI GTAC 2 cut(s) 472, 817
DraIII CACNNNGTG 1 cut(s) 691
DrdI GACNNNNNNGTC 1 cut(s) 263
DriI GACNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 556
Eam1105I GACNNNNNGTC 1 cut(s) 136
EciI GGCGGA 2 cut(s) 293, 440
Eco130I CCWWGG 3 cut(s) 315, 429, 810
Eco147I AGGCCT 1 cut(s) 314
Eco31I GGTCTC 2 cut(s) 473, 511
Eco47I GGWCC 5 cut(s) 238, 301, 324, 381, 715
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 16, 308
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 5 cut(s) 186, 383, 588, 633, 687
EcoT14I CCWWGG 3 cut(s) 315, 429, 810
ErhI CCWWGG 3 cut(s) 315, 429, 810
FaeI CATG 4 cut(s) 433, 664, 706, 758
FaiI YATR 6 cut(s) 431, 662, 704, 746, 756, 857
FaqI GGGAC 2 cut(s) 618, 802
FatI CATG 4 cut(s) 429, 660, 702, 754
FauI CCCGC 2 cut(s) 350, 839
FbaI TGATCA 2 cut(s) 294, 879
Fnu4HI GCNGC 6 cut(s) 192, 333, 355, 641, 683, 734
FokI GGATG 2 cut(s) 158, 265
Fsp4HI GCNGC 6 cut(s) 192, 333, 355, 641, 683, 734
FspBI CTAG 1 cut(s) 467
GlaI GCGC 1 cut(s) 170
GluI GCNGC 6 cut(s) 192, 333, 355, 641, 683, 734
GsaI CCCAGC 1 cut(s) 803
GsuI CTGGAG 2 cut(s) 170, 185
HaeIII GGCC 7 cut(s) 287, 314, 361, 405, 558, 600, 809
HgaI GACGC 3 cut(s) 220, 656, 799
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 4 cut(s) 433, 664, 706, 758
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 5 cut(s) 105, 137, 425, 517, 670
HphI GGTGA 2 cut(s) 272, 880
Hpy166II GTNNAC 3 cut(s) 400, 817, 840
Hpy188I TCNGA 3 cut(s) 245, 252, 376
Hpy188III TCNNGA 7 cut(s) 73, 197, 280, 409, 467, 521, 536
Hpy8I GTNNAC 3 cut(s) 400, 817, 840
Hpy99I CGWCG 6 cut(s) 62, 134, 373, 398, 527, 650
HpyAV CCTTC 3 cut(s) 151, 277, 574
HpyCH4III ACNGT 5 cut(s) 232, 260, 484, 505, 861
HpyCH4IV ACGT 4 cut(s) 66, 132, 264, 569
HpyCH4V TGCA 5 cut(s) 487, 577, 676, 685, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 351, 682
HpySE526I ACGT 4 cut(s) 66, 132, 264, 569
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 4 cut(s) 433, 664, 706, 758
HspAI GCGC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 408
Ksp22I TGATCA 2 cut(s) 294, 879
LmnI GCTCC 9 cut(s) 160, 166, 219, 342, 453, 592, 637, 730, 796
Lsp1109I GCAGC 3 cut(s) 341, 669, 745
LweI GCATC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 687
MaeI CTAG 1 cut(s) 467
MaeII ACGT 4 cut(s) 66, 132, 264, 569
MaeIII GTNAC 2 cut(s) 260, 265
MbiI CCGCTC 1 cut(s) 640
MboII GAAGA 4 cut(s) 115, 424, 469, 679
MflI RGATCY 3 cut(s) 387, 459, 630
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 109, 546, 907
MlyI GAGTC 3 cut(s) 114, 146, 419
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 9 cut(s) 194, 251, 304, 317, 416, 483, 707, 779, 816
MroI TCCGGA 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 2 cut(s) 545, 851
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 736
MspR9I CCNGG 8 cut(s) 188, 351, 363, 385, 590, 602, 635, 689
MvaI CCWGG 5 cut(s) 188, 385, 590, 635, 689
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 160, 351, 682
NciI CCSGG 3 cut(s) 351, 363, 602
NcoI CCATGG 1 cut(s) 429
NlaIII CATG 4 cut(s) 433, 664, 706, 758
NlaIV GGNNCC 4 cut(s) 35, 94, 100, 344
NmuCI GTSAC 2 cut(s) 260, 265
PaeR7I CTCGAG 1 cut(s) 308
PceI AGGCCT 1 cut(s) 314
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 138, 228
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 517, 670
PfoI TCCNGGA 2 cut(s) 588, 633
PkrI GCNGC 6 cut(s) 193, 334, 356, 642, 684, 735
PleI GAGTC 3 cut(s) 113, 145, 419
PpsI GAGTC 3 cut(s) 113, 145, 419
PpuMI RGGWCCY 1 cut(s) 238
Psp1406I AACGTT 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 5 cut(s) 186, 383, 588, 633, 687
PspFI CCCAGC 1 cut(s) 799
PspGI CCWGG 5 cut(s) 186, 383, 588, 633, 687
PspN4I GGNNCC 4 cut(s) 35, 94, 100, 344
PspPI GGNCC 6 cut(s) 238, 301, 324, 359, 381, 715
PspPPI RGGWCCY 1 cut(s) 238
PspXI VCTCGAGB 1 cut(s) 308
PstI CTGCAG 1 cut(s) 579
PstNI CAGNNNCTG 2 cut(s) 613, 799
PsuI RGATCY 3 cut(s) 387, 459, 630
PvuII CAGCTG 1 cut(s) 736
RsaI GTAC 2 cut(s) 473, 818
RsaNI GTAC 2 cut(s) 472, 817
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 2 cut(s) 545, 851
SatI GCNGC 6 cut(s) 192, 333, 355, 641, 683, 734
Sau96I GGNCC 6 cut(s) 238, 301, 324, 359, 381, 715
SchI GAGTC 3 cut(s) 114, 146, 419
ScrFI CCNGG 8 cut(s) 188, 351, 363, 385, 590, 602, 635, 689
SduI GDGCHC 1 cut(s) 66
SexAI ACCWGGT 1 cut(s) 687
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 575
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 5 cut(s) 238, 301, 324, 381, 715
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 3 cut(s) 278, 308, 723
SmoI CTYRAG 3 cut(s) 278, 308, 723
Sse9I AATT 3 cut(s) 109, 546, 907
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 9 cut(s) 31, 191, 304, 333, 357, 451, 640, 707, 832
SspMI CTAG 1 cut(s) 467
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 8 cut(s) 186, 349, 361, 383, 588, 600, 633, 687
StyI CCWWGG 3 cut(s) 315, 429, 810
TaaI ACNGT 5 cut(s) 232, 260, 484, 505, 861
TaiI ACGT 4 cut(s) 69, 135, 267, 572
TaqI TCGA 4 cut(s) 72, 309, 537, 699
TaqII GACCGA 1 cut(s) 312
TasI AATT 3 cut(s) 109, 546, 907
TatI WGTACW 1 cut(s) 471
TauI GCSGC 3 cut(s) 194, 335, 643
TfiI GAWTC 2 cut(s) 517, 670
Tru1I TTAA 2 cut(s) 545, 851
Tru9I TTAA 2 cut(s) 545, 851
TseFI GTSAC 2 cut(s) 260, 265
TseI GCWGC 3 cut(s) 354, 682, 733
Tsp45I GTSAC 2 cut(s) 260, 265
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 26, 130, 382
VpaK11BI GGWCC 5 cut(s) 238, 301, 324, 381, 715
XbaI TCTAGA 1 cut(s) 466
XhoI CTCGAG 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 1 cut(s) 467
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.