Rmu_sc0003880.1_g000023

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003880.1
Physical Location & Seq
Forward (+)
114619 .. 119798
5180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003880.1_g000023.1.cds

Sequence Viewer

Length: 1104 bp
atgaacgacctgttttctggctccttctccaggttccgcagcgaacccgccaacaacgacgagcacgtcatcgagatgtcgttggcgatggcgtccggcaccggagtcaacctcgacaagttcttcggcgacgtcgagtccgtcaaggacgagctcaaggagctggagcgcatccaccagaacctccagtccgctcacgagcagagcaagactctccacaacgccaacaccgtcaaggacctccgatctcgcatggacgccgacgtccgagctgtagaaatgatgaaatttgtgatctttgattgtgggtactataccgtctccggcgagaatcccgacgagaagacgctcgacctcctcatctccacagggcagagcgaaacgtttctgcagaaggcgatccaggagcaagggcgggggcaggtgctggacacgatcaacgagatccaggagcggcacgacgccgtgaaggacatggagaagaatctgcacgagctgcaccaggtgttcctggacatggcggtgctggtccaagcccagggggagcagctcgacgacatcgagagccacgtgcagcgagccagctccttcgtcagaggagcctcctctaaacttacccaaggaaacttgaagccccatcgttgtcggagatcggagaaccgattgggtccgactgcaccaaagttcgccgccttgctgcaccgtcgctgctgcgaatcaatgctagaggacaccacagagaggagtgaacggtggagacgagcctatctggagagtttcacaggtagaggtcgccgaaagaggaaatggccgctgggttgggttgtcgggtcctggtcgggtcacgggcagagaagagagagaacgttgagtttgatttccggaaaaggaaaatgggaaaatgaaaatagtaagtttccgaaaatggaaactcctatttatataactttcccaaaacttcaaatgctcataactttcacgtacgatctccgattctctcgttccgcatgtccacgaacttgtatcgatgagctctacaactttcatgaaggaagttttcggagaatcccaacgtataaaaagtcaaccttgagccccccctaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

42.27

Weight (kDa)

8.44

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 412
AasI GACNNNNNNGTC 2 cut(s) 65, 263
AatII GACGTC 2 cut(s) 135, 267
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 98
AccBSI CCGCTC 2 cut(s) 194, 454
AccIII TCCGGA 1 cut(s) 881
AciI CCGC 9 cut(s) 37, 48, 192, 415, 454, 521, 690, 812, 1005
AclI AACGTT 2 cut(s) 383, 866
AclWI GGATC 2 cut(s) 394, 439
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 1 cut(s) 287
AcvI CACGTG 1 cut(s) 571
AcyI GRCGYC 5 cut(s) 92, 132, 258, 264, 462
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 2 cut(s) 311, 983
AfiI CCNNNNNNNGG 4 cut(s) 30, 517, 538, 741
AgsI TTSAA 2 cut(s) 631, 962
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 7 cut(s) 154, 163, 272, 496, 550, 585, 1033
AluI AGCT 7 cut(s) 154, 163, 272, 496, 550, 585, 1033
Alw21I GWGCWC 3 cut(s) 66, 156, 1035
Alw26I GTCTC 2 cut(s) 325, 751
AlwI GGATC 2 cut(s) 394, 439
AlwNI CAGNNNCTG 1 cut(s) 427
Aor13HI TCCGGA 1 cut(s) 881
AoxI GGCC 1 cut(s) 809
ApeKI GCWGC 7 cut(s) 39, 496, 547, 574, 697, 708, 711
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 238, 529, 668, 831
AvaII GGWCC 4 cut(s) 238, 529, 668, 831
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 3 cut(s) 156, 1035, 1097
BauI CACGAG 2 cut(s) 197, 491
BbrPI CACGTG 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 3 cut(s) 66, 156, 1035
BbvI GCAGC 7 cut(s) 51, 483, 559, 586, 684, 695, 698
BccI CCATC 2 cut(s) 82, 645
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
BcoDI GTCTC 2 cut(s) 325, 751
BfaI CTAG 1 cut(s) 725
BfmI CTRYAG 2 cut(s) 273, 389
BfuAI ACCTGC 1 cut(s) 412
Bme1390I CCNGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
Bme18I GGWCC 4 cut(s) 238, 529, 668, 831
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 4 cut(s) 238, 529, 668, 831
BmiI GGNNCC 6 cut(s) 22, 35, 100, 601, 669, 832
BmrFI CCNGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 196, 228
BpmI CTGGAG 4 cut(s) 13, 170, 185, 791
BpuEI CTTGAG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 1026
BsaAI YACGTR 2 cut(s) 571, 981
BsaHI GRCGYC 5 cut(s) 92, 132, 258, 264, 462
BsaJI CCNNGG 3 cut(s) 537, 538, 619
BsaWI WCCGGW 2 cut(s) 101, 881
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 517, 538, 741
Bse1I ACTGG 1 cut(s) 187
BseAI TCCGGA 1 cut(s) 881
BseBI CCWGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 537, 538, 619
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 4 cut(s) 30, 517, 538, 741
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 4 cut(s) 347, 595, 612, 757
BseXI GCAGC 7 cut(s) 51, 483, 559, 586, 684, 695, 698
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 5 cut(s) 473, 482, 593, 660, 683
BshFI GGCC 1 cut(s) 811
BshNI GGYRCC 1 cut(s) 98
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 3 cut(s) 66, 156, 1035
BsiSI CCGG 4 cut(s) 96, 102, 324, 882
BsiWI CGTACG 1 cut(s) 981
BslI CCNNNNNNNGG 4 cut(s) 30, 517, 538, 741
BsmAI GTCTC 2 cut(s) 325, 751
BsmBI CGTCTC 2 cut(s) 325, 751
BsnI GGCC 1 cut(s) 811
Bsp1286I GDGCHC 4 cut(s) 66, 156, 1035, 1097
Bsp13I TCCGGA 1 cut(s) 881
Bsp143I GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
BspACI CCGC 9 cut(s) 37, 48, 192, 415, 454, 521, 690, 812, 1005
BspANI GGCC 1 cut(s) 811
BspDI ATCGAT 1 cut(s) 1026
BspEI TCCGGA 1 cut(s) 881
BspHI TCATGA 1 cut(s) 1045
BspLI GGNNCC 6 cut(s) 22, 35, 100, 601, 669, 832
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 2 cut(s) 394, 439
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 2 cut(s) 194, 454
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 537, 538, 619
BssMI GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
BssNI GRCGYC 5 cut(s) 92, 132, 258, 264, 462
BssSI CACGAG 2 cut(s) 197, 491
BssT1I CCWWGG 1 cut(s) 619
Bst2BI CACGAG 2 cut(s) 197, 491
Bst2UI CCWGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
Bst4CI ACNGT 4 cut(s) 232, 319, 704, 753
Bst6I CTCTTC 1 cut(s) 850
BstACI GRCGYC 5 cut(s) 92, 132, 258, 264, 462
BstAPI GCANNNNNTGC 1 cut(s) 496
BstBAI YACGTR 2 cut(s) 571, 981
BstC8I GCNNGC 2 cut(s) 579, 583
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 7 cut(s) 248, 297, 402, 438, 447, 653, 988
BstMAI GTCTC 2 cut(s) 325, 751
BstMBI GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
BstMWI GCNNNNNNNGC 2 cut(s) 160, 496
BstNI CCWGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
BstNSI RCATGY 1 cut(s) 1011
BstSCI CCNGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
BstSFI CTRYAG 2 cut(s) 273, 389
BstV1I GCAGC 7 cut(s) 51, 483, 559, 586, 684, 695, 698
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 1 cut(s) 811
BsuTUI ATCGAT 1 cut(s) 1026
BtgZI GCGATG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 579, 583
CaiI CAGNNNCTG 1 cut(s) 427
CciI TCATGA 1 cut(s) 1045
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 4 cut(s) 238, 529, 668, 831
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 4 cut(s) 81, 266, 355, 470
CsiI ACCWGGT 1 cut(s) 501
Csp6I GTAC 2 cut(s) 310, 982
CviAII CATG 5 cut(s) 253, 475, 517, 1008, 1046
CviQI GTAC 2 cut(s) 310, 982
DpnI GATC 7 cut(s) 247, 296, 401, 437, 446, 652, 987
DpnII GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
DraIII CACNNNGTG 1 cut(s) 505
DrdI GACNNNNNNGTC 2 cut(s) 65, 263
DriI GACNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 2 cut(s) 65, 263
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 1 cut(s) 850
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 850
Ecl136II GAGCTC 2 cut(s) 154, 1033
Eco130I CCWWGG 1 cut(s) 619
Eco24I GRGCYC 3 cut(s) 156, 1035, 1097
Eco47I GGWCC 4 cut(s) 238, 529, 668, 831
Eco53kI GAGCTC 2 cut(s) 154, 1033
Eco72I CACGTG 1 cut(s) 571
EcoICRI GAGCTC 2 cut(s) 154, 1033
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 2 cut(s) 238, 831
EcoRII CCWGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
EcoT14I CCWWGG 1 cut(s) 619
EcoT38I GRGCYC 3 cut(s) 156, 1035, 1097
ErhI CCWWGG 1 cut(s) 619
Esp3I CGTCTC 2 cut(s) 325, 751
FaeI CATG 5 cut(s) 256, 478, 520, 1011, 1049
FalI AAGNNNNNCTT 1 cut(s) 1073
FatI CATG 5 cut(s) 252, 474, 516, 1007, 1045
FauI CCCGC 2 cut(s) 55, 408
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 3 cut(s) 156, 1035, 1097
FspBI CTAG 1 cut(s) 725
GlaI GCGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 4 cut(s) 13, 170, 185, 791
HaeIII GGCC 1 cut(s) 811
HapII CCGG 4 cut(s) 96, 102, 324, 882
HgaI GACGC 4 cut(s) 81, 266, 355, 470
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 5 cut(s) 92, 132, 258, 264, 462
Hin1II CATG 5 cut(s) 256, 478, 520, 1011, 1049
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 2 cut(s) 109, 1086
HindII GTYRAC 2 cut(s) 109, 1086
HinfI GANTC 8 cut(s) 105, 137, 211, 331, 484, 716, 993, 1065
HpaII CCGG 4 cut(s) 96, 102, 324, 882
Hpy166II GTNNAC 4 cut(s) 109, 749, 1013, 1086
Hpy188I TCNGA 9 cut(s) 245, 269, 596, 648, 655, 672, 921, 992, 1062
Hpy188III TCNNGA 7 cut(s) 73, 197, 335, 562, 770, 882, 1046
Hpy8I GTNNAC 4 cut(s) 109, 749, 1013, 1086
Hpy99I CGWCG 8 cut(s) 62, 134, 137, 266, 341, 464, 557, 708
HpyAV CCTTC 5 cut(s) 34, 388, 463, 598, 1043
HpyCH4III ACNGT 4 cut(s) 232, 319, 704, 753
HpyCH4IV ACGT 8 cut(s) 66, 132, 264, 383, 570, 866, 980, 1073
HpyCH4V TGCA 6 cut(s) 391, 490, 499, 574, 677, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 496
HpySE526I ACGT 8 cut(s) 66, 132, 264, 383, 570, 866, 980, 1073
Hsp92I GRCGYC 5 cut(s) 92, 132, 258, 264, 462
Hsp92II CATG 5 cut(s) 256, 478, 520, 1011, 1049
HspAI GCGC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 881
Kzo9I GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
LmnI GCTCC 8 cut(s) 26, 160, 166, 406, 451, 544, 590, 599
Lsp1109I GCAGC 7 cut(s) 51, 483, 559, 586, 684, 695, 698
LweI GCATC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 501
MaeI CTAG 1 cut(s) 725
MaeII ACGT 8 cut(s) 66, 132, 264, 383, 570, 866, 980, 1073
MaeIII GTNAC 1 cut(s) 842
MalI GATC 7 cut(s) 247, 296, 401, 437, 446, 652, 987
MbiI CCGCTC 2 cut(s) 194, 454
MboI GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
MboII GAAGA 4 cut(s) 115, 355, 493, 867
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 4 cut(s) 66, 156, 1035, 1097
MluCI AATT 1 cut(s) 287
MlyI GAGTC 3 cut(s) 114, 146, 205
MmeI TCCRAC 2 cut(s) 626, 695
MroI TCCGGA 1 cut(s) 881
MroXI GAANNNNTTC 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 74, 521
MspA1I CMGCKG 1 cut(s) 814
MspI CCGG 4 cut(s) 96, 102, 324, 882
MspR9I CCNGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
MvaI CCWGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
MwoI GCNNNNNNNGC 2 cut(s) 160, 496
NdeII GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
NlaIII CATG 5 cut(s) 256, 478, 520, 1011, 1049
NlaIV GGNNCC 6 cut(s) 22, 35, 100, 601, 669, 832
NmuCI GTSAC 1 cut(s) 842
NspI RCATGY 1 cut(s) 1011
PagI TCATGA 1 cut(s) 1045
PaqCI CACCTGC 1 cut(s) 412
PasI CCCWGGG 1 cut(s) 538
PcsI WCGNNNNNNNCGW 7 cut(s) 63, 132, 138, 228, 558, 567, 757
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 5 cut(s) 331, 484, 716, 993, 1065
Pfl23II CGTACG 1 cut(s) 981
PfoI TCCNGGA 3 cut(s) 402, 447, 510
PleI GAGTC 3 cut(s) 113, 145, 205
PmaCI CACGTG 1 cut(s) 571
PmlI CACGTG 1 cut(s) 571
PpsI GAGTC 3 cut(s) 113, 145, 205
Ppu21I YACGTR 2 cut(s) 571, 981
PpuMI RGGWCCY 2 cut(s) 238, 831
Psp124BI GAGCTC 2 cut(s) 156, 1035
Psp1406I AACGTT 2 cut(s) 383, 866
Psp5II RGGWCCY 2 cut(s) 238, 831
Psp6I CCWGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
PspCI CACGTG 1 cut(s) 571
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
PspLI CGTACG 1 cut(s) 981
PspN4I GGNNCC 6 cut(s) 22, 35, 100, 601, 669, 832
PspPI GGNCC 4 cut(s) 238, 529, 668, 831
PspPPI RGGWCCY 2 cut(s) 238, 831
PstI CTGCAG 1 cut(s) 393
PstNI CAGNNNCTG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 2 cut(s) 311, 983
RsaNI GTAC 2 cut(s) 310, 982
RseI CAYNNNNRTG 2 cut(s) 74, 521
SacI GAGCTC 2 cut(s) 156, 1035
Sau3AI GATC 7 cut(s) 245, 294, 399, 435, 444, 650, 985
Sau96I GGNCC 4 cut(s) 238, 529, 668, 831
SchI GAGTC 3 cut(s) 114, 146, 205
ScrFI CCNGG 7 cut(s) 31, 404, 449, 503, 512, 539, 835
SduI GDGCHC 4 cut(s) 66, 156, 1035, 1097
SexAI ACCWGGT 1 cut(s) 501
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 2 cut(s) 273, 389
SinI GGWCC 4 cut(s) 238, 529, 668, 831
SmiMI CAYNNNNRTG 2 cut(s) 74, 521
SmlI CTYRAG 2 cut(s) 155, 1090
SmoI CTYRAG 2 cut(s) 155, 1090
Sse9I AATT 1 cut(s) 287
SsiI CCGC 9 cut(s) 37, 48, 192, 415, 454, 521, 690, 812, 1005
SspMI CTAG 1 cut(s) 725
SstI GAGCTC 2 cut(s) 156, 1035
StyD4I CCNGG 7 cut(s) 29, 402, 447, 501, 510, 537, 833
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 4 cut(s) 232, 319, 704, 753
TaiI ACGT 8 cut(s) 69, 135, 267, 386, 573, 869, 983, 1076
TaqI TCGA 7 cut(s) 72, 114, 135, 351, 552, 561, 1026
TasI AATT 1 cut(s) 287
TauI GCSGC 3 cut(s) 457, 692, 814
TfiI GAWTC 5 cut(s) 331, 484, 716, 993, 1065
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 7 cut(s) 39, 496, 547, 574, 697, 708, 711
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 5 cut(s) 17, 299, 918, 1034, 1062
TspGWI ACGGA 1 cut(s) 130
VpaK11BI GGWCC 4 cut(s) 238, 529, 668, 831
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 1 cut(s) 725
ZraI GACGTC 2 cut(s) 133, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.