Rw4G011670

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001517
Physical Location & Seq
Forward (+)
27608584 .. 27611821
3238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011670.1

Sequence Viewer

Length: 435 bp
ATGAACGACCTGTTTTCTGGCTCCTTCTCCAGGTTCCGCAGCGAACCCGCCAACAACGACGAGCACGTCATCGAGATGTCGTTGGCGACGGCGTCCGGCACCGGAGTCAACCTCGACAAGTTCTTCGGCGACGTCGAGTCCGTCAAGGACGAGCTCAAGGAGCTGGAGCGCATCCACCAGAACCTCCAGTCCGCTCACGAGCAGAGCAAGACTCTCCACAACGCCAACACCGTCAAGGACCTCCGATCTCGCATGGACGCCGACCTCCGAGCTGTAGAAATGATGAAATTTGTGATCTTTGATTGTGGGTCTTGTCGCAGGTACTATACCATCTCCGGCGAGAATCCCGACGAGAAGAATCTCGACCTCCTTATCTCCACAAGGCAGAGCGAGGGGGACCTTGGTGGTGGTCTGGAAGAGAGAGGGGGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

144

Amino Acids

16.08

Weight (kDa)

4.89

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 37 - 93 1.5e-10 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AatII GACGTC 1 cut(s) 135
Acc36I ACCTGC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 3 cut(s) 37, 48, 192
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 3 cut(s) 92, 132, 258
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 30
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 3 cut(s) 154, 163, 272
AluI AGCT 3 cut(s) 154, 163, 272
Alw21I GWGCWC 2 cut(s) 66, 156
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 238, 397
AvaII GGWCC 2 cut(s) 238, 397
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 66, 156
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 309
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 238, 397
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 238, 397
BmiI GGNNCC 4 cut(s) 22, 35, 100, 398
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 180
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 196, 228
BpmI CTGGAG 3 cut(s) 13, 170, 185
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 3 cut(s) 92, 132, 258
BsaJI CCNNGG 1 cut(s) 400
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 400
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 66, 156
BsiSI CCGG 3 cut(s) 96, 102, 336
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 66, 156
Bsp143I GATC 2 cut(s) 245, 294
BspACI CCGC 3 cut(s) 37, 48, 192
BspLI GGNNCC 4 cut(s) 22, 35, 100, 398
BspMI ACCTGC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 400
BssMI GATC 2 cut(s) 245, 294
BssNI GRCGYC 3 cut(s) 92, 132, 258
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 3 cut(s) 92, 132, 258
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 248, 297
BstMBI GATC 2 cut(s) 245, 294
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 51
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 238, 397
CseI GACGC 2 cut(s) 81, 266
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 253
CviJI RGCY 4 cut(s) 21, 154, 163, 272
CviKI_1 RGCY 4 cut(s) 21, 154, 163, 272
CviQI GTAC 1 cut(s) 322
DpnI GATC 2 cut(s) 247, 296
DpnII GATC 2 cut(s) 245, 294
DrdI GACNNNNNNGTC 1 cut(s) 65
DriI GACNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 238, 397
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 2 cut(s) 238, 397
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 1 cut(s) 256
FaiI YATR 2 cut(s) 254, 327
FaqI GGGAC 1 cut(s) 410
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 40
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 3 cut(s) 13, 170, 185
HapII CCGG 3 cut(s) 96, 102, 336
HgaI GACGC 2 cut(s) 81, 266
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 3 cut(s) 92, 132, 258
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 105, 137, 211, 343, 358
HpaII CCGG 3 cut(s) 96, 102, 336
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 245, 269
Hpy188III TCNNGA 5 cut(s) 73, 197, 347, 362, 413
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 5 cut(s) 62, 91, 134, 137, 353
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 66, 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 66, 132
Hsp92I GRCGYC 3 cut(s) 92, 132, 258
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 245, 294
LmnI GCTCC 3 cut(s) 26, 160, 166
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 180
MaeII ACGT 2 cut(s) 66, 132
MalI GATC 2 cut(s) 247, 296
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 245, 294
MboII GAAGA 3 cut(s) 115, 367, 428
MhlI GDGCHC 2 cut(s) 66, 156
MluCI AATT 1 cut(s) 287
MlyI GAGTC 3 cut(s) 114, 146, 205
MnlI CCTC 8 cut(s) 122, 194, 251, 275, 377, 385, 416, 422
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 96, 102, 336
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 245, 294
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 4 cut(s) 22, 35, 100, 398
PcsI WCGNNNNNNNCGW 4 cut(s) 63, 132, 138, 228
PfeI GAWTC 2 cut(s) 343, 358
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 3 cut(s) 113, 145, 205
PpsI GAGTC 3 cut(s) 113, 145, 205
PpuMI RGGWCCY 2 cut(s) 238, 397
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 2 cut(s) 238, 397
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 4 cut(s) 22, 35, 100, 398
PspPI GGNCC 2 cut(s) 238, 397
PspPPI RGGWCCY 2 cut(s) 238, 397
PsyI GACNNNGTC 1 cut(s) 91
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 245, 294
Sau96I GGNCC 2 cut(s) 238, 397
SchI GAGTC 3 cut(s) 114, 146, 205
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 66, 156
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 238, 397
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 287
SsiI CCGC 3 cut(s) 37, 48, 192
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 69, 135
TaqI TCGA 4 cut(s) 72, 114, 135, 363
TasI AATT 1 cut(s) 287
TfiI GAWTC 2 cut(s) 343, 358
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 17, 299
TspGWI ACGGA 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 238, 397
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 287
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.