Rh4BG365300

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001517
Physical Location & Seq
Reverse (-)
52287806 .. 52288387
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG365300.1

Sequence Viewer

Length: 312 bp
ATGAACGACCTGTTTTCGGGCTCCTTCTCCAGGTTCTGCAGCGAACCCGCCAACAACGACGAGCACGTCATCGAGATGTCGTCGGCGACGGCGTCCCGCACCGGCACCGGAGTCAACCTCGACAAGTTCTTCGGCGACGTCGAGTCCGTCAAGGACGAGCTTAAGGAGATGGAACGCATCCACCAGAACCTCCAGTCCGCTCACGAACAGAGCAAGACTCTCCACAACGCCAACACCGTCAAGGACCTCCGATCTCGCATGGACGCCGACGTCACTCGCTCTGAAGAAGGCGAAGGCGACGAGCTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

103

Amino Acids

11.54

Weight (kDa)

4.78

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 39 - 92 3.3e-10 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 65, 269
AatII GACGTC 2 cut(s) 141, 273
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 3 cut(s) 48, 97, 198
AcuI CTGAAG 1 cut(s) 303
AcyI GRCGYC 4 cut(s) 92, 138, 264, 270
AfiI CCNNNNNNNGG 2 cut(s) 16, 30
AflII CTTAAG 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 142
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 2 cut(s) 160, 304
AluI AGCT 2 cut(s) 160, 304
Alw21I GWGCWC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 39
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspS9I GGNCC 1 cut(s) 244
AvaII GGWCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 51
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 37
BfrI CTTAAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 244
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 22, 106
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 186
BplI GAGNNNNNCTC 4 cut(s) 102, 134, 202, 234
BpmI CTGGAG 2 cut(s) 13, 176
BsaHI GRCGYC 4 cut(s) 92, 138, 264, 270
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 30
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 16, 30
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 102, 108
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 16, 30
BsmFI GGGAC 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 23, 66
Bsp143I GATC 1 cut(s) 251
BspACI CCGC 3 cut(s) 48, 97, 198
BspLI GGNNCC 2 cut(s) 22, 106
BspMAI CTGCAG 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 104
BspTI CTTAAG 1 cut(s) 161
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 101
BssMI GATC 1 cut(s) 251
BssNI GRCGYC 4 cut(s) 92, 138, 264, 270
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 238
BstACI GRCGYC 4 cut(s) 92, 138, 264, 270
BstAFI CTTAAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 51
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 2 cut(s) 81, 272
CviAII CATG 1 cut(s) 259
CviJI RGCY 3 cut(s) 21, 160, 304
CviKI_1 RGCY 3 cut(s) 21, 160, 304
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
DrdI GACNNNNNNGTC 2 cut(s) 65, 269
DriI GACNNNNNGTC 1 cut(s) 142
DseDI GACNNNNNNGTC 2 cut(s) 65, 269
Eam1105I GACNNNNNGTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 1 cut(s) 262
FaiI YATR 1 cut(s) 260
FaqI GGGAC 1 cut(s) 79
FatI CATG 1 cut(s) 258
FauI CCCGC 2 cut(s) 55, 104
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 40
GsuI CTGGAG 2 cut(s) 13, 176
HapII CCGG 2 cut(s) 102, 108
HgaI GACGC 2 cut(s) 81, 272
Hin1I GRCGYC 4 cut(s) 92, 138, 264, 270
Hin1II CATG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 3 cut(s) 111, 143, 217
HpaII CCGG 2 cut(s) 102, 108
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 251, 283
Hpy188III TCNNGA 2 cut(s) 73, 203
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 7 cut(s) 62, 85, 91, 140, 143, 272, 302
HpyAV CCTTC 3 cut(s) 34, 281, 287
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 3 cut(s) 66, 138, 270
HpyCH4V TGCA 1 cut(s) 39
HpySE526I ACGT 3 cut(s) 66, 138, 270
Hsp92I GRCGYC 4 cut(s) 92, 138, 264, 270
Hsp92II CATG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 251
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 16, 23, 43, 115, 121, 197, 206
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 186
MaeII ACGT 3 cut(s) 66, 138, 270
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 253
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 251
MboII GAAGA 2 cut(s) 121, 296
MhlI GDGCHC 2 cut(s) 23, 66
MlyI GAGTC 3 cut(s) 120, 152, 211
MnlI CCTC 3 cut(s) 128, 200, 257
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 161
MspI CCGG 2 cut(s) 102, 108
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
NdeII GATC 1 cut(s) 251
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 22, 106
NmuCI GTSAC 1 cut(s) 271
PcsI WCGNNNNNNNCGW 5 cut(s) 63, 89, 138, 144, 234
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 3 cut(s) 119, 151, 211
PpsI GAGTC 3 cut(s) 119, 151, 211
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 22, 106
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstI CTGCAG 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 3 cut(s) 120, 152, 211
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 23, 66
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SsiI CCGC 3 cut(s) 48, 97, 198
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 3 cut(s) 69, 141, 273
TaqI TCGA 3 cut(s) 72, 120, 141
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 17, 296
TspGWI ACGGA 1 cut(s) 136
Tth111I GACNNNGTC 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 244
XagI CCTNNNNNAGG 1 cut(s) 28
ZraI GACGTC 2 cut(s) 139, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.