Rorug02G0203200

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
19010870 .. 19011451
582 bp
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UTR
Exon/CDS
Intron
Rorug02G0203200.1

Sequence Viewer

Length: 486 bp
ATGAGAGTTCTGCTGAAAGAAATGGATAGGGAGATTGAAGACGATGGTGAAAAACAGCAAATGGAGGAGCAAATGAAGAAACTCTCGGAAGCAAATGAAGGACTTGCGAACCATATTAGGGTGCTTTGGAAAAAGGTTACTGTTGCTGATGAGAATATTGAGAGGAAACCTGACTTGCAAAGTAGTGAGCAGCAAGGTAATCAACTACAGATGGTACTGGTGTCGATCGAGCAAGATCAAGTGAGGGAACCTGTATCTGAGGGGAACCAAGCCGAATATGAGCCTCAAACACCAGTCAAAGAAGAACCAAGGGCAGCGGATCTAGTTGATGCGGTTCCACTATCTTGTAAGAGACCAGAAGAGGAAGTGTTTGAGGATACAGCTGTGGACACACTAAATGCGATGGAATCAGAAAAAATAGATCAACTTGTGTCGAAAACACTGGAAGCAGCTGAGATAGTTGAAATGGCAGAGCCAGGAACATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

4.32

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 317, 332
AclWI GGATC 1 cut(s) 327
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 38, 464
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 2 cut(s) 383, 452
AluI AGCT 2 cut(s) 383, 452
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 190, 314, 449
AsuHPI GGTGA 1 cut(s) 59
BaeI ACNNNNGTAYC 4 cut(s) 206, 239, 369, 402
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 202, 326, 461
BccI CCATC 3 cut(s) 38, 205, 397
BciT130I CCWGG 1 cut(s) 477
BciVI GTATCC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 3 cut(s) 191, 315, 450
BlsI GCNGC 3 cut(s) 192, 316, 451
Bme1390I CCNGG 1 cut(s) 477
BmiI GGNNCC 3 cut(s) 249, 266, 336
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 1 cut(s) 319
BpiI GAAGAC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 3 cut(s) 222, 293, 447
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 249, 444
BseNI ACTGG 3 cut(s) 222, 293, 447
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 202, 326, 461
Bsh1285I CGRYCG 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 346
Bso31I GGTCTC 1 cut(s) 346
Bsp143I GATC 4 cut(s) 225, 235, 319, 421
BspACI CCGC 2 cut(s) 317, 332
BspCNI CTCAG 2 cut(s) 250, 445
BspLI GGNNCC 3 cut(s) 249, 266, 336
BspPI GGATC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 346
BsrI ACTGG 3 cut(s) 222, 293, 447
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 4 cut(s) 225, 235, 319, 421
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 258, 453
BstKTI GATC 4 cut(s) 228, 238, 322, 424
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 4 cut(s) 225, 235, 319, 421
BstMCI CGRYCG 1 cut(s) 228
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 202, 326, 461
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuI GTATCC 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 440
Csp6I GTAC 1 cut(s) 215
CviJI RGCY 5 cut(s) 272, 283, 383, 452, 475
CviKI_1 RGCY 5 cut(s) 272, 283, 383, 452, 475
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 2 cut(s) 258, 453
DpnI GATC 4 cut(s) 227, 237, 321, 423
DpnII GATC 4 cut(s) 225, 235, 319, 421
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaiI YATR 3 cut(s) 114, 279, 484
Fnu4HI GCNGC 3 cut(s) 191, 315, 450
Fsp4HI GCNGC 3 cut(s) 191, 315, 450
FspBI CTAG 1 cut(s) 323
GluI GCNGC 3 cut(s) 191, 315, 450
HinfI GANTC 1 cut(s) 407
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 3 cut(s) 88, 259, 412
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 258, 453
Kzo9I GATC 4 cut(s) 225, 235, 319, 421
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 183, 203, 264, 306, 369, 428, 462
Lsp1109I GCAGC 3 cut(s) 202, 326, 461
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 1 cut(s) 136
MalI GATC 4 cut(s) 227, 237, 321, 423
MboI GATC 4 cut(s) 225, 235, 319, 421
MboII GAAGA 4 cut(s) 50, 88, 314, 371
MflI RGATCY 1 cut(s) 319
MnlI CCTC 7 cut(s) 58, 156, 237, 253, 294, 355, 367
MspA1I CMGCKG 3 cut(s) 317, 383, 452
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
NdeII GATC 4 cut(s) 225, 235, 319, 421
NlaIV GGNNCC 3 cut(s) 249, 266, 336
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 3 cut(s) 192, 316, 451
Ple19I CGATCG 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 3 cut(s) 249, 266, 336
PsuI RGATCY 1 cut(s) 319
PvuI CGATCG 1 cut(s) 228
PvuII CAGCTG 2 cut(s) 383, 452
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SatI GCNGC 3 cut(s) 191, 315, 450
Sau3AI GATC 4 cut(s) 225, 235, 319, 421
ScrFI CCNGG 1 cut(s) 477
SetI ASST 6 cut(s) 138, 172, 199, 253, 385, 454
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 206
SsiI CCGC 2 cut(s) 317, 332
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 3 cut(s) 224, 228, 434
TfiI GAWTC 1 cut(s) 407
TscAI CASTG 1 cut(s) 447
TseI GCWGC 3 cut(s) 190, 314, 449
TspDTI ATGAA 2 cut(s) 89, 111
TspRI CASTG 1 cut(s) 447
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.