Rh6BG094100

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001517
Physical Location & Seq
Reverse (-)
14867451 .. 14867633
183 bp
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UTR
Exon/CDS
Intron
Rh6BG094100.1

Sequence Viewer

Length: 183 bp
ATGGCGTCCGGCACCGGAGTCAACCTCGACAAGTTCTTCGGCGACGTCGAGTCCGTCAAGGACGAGCTCAAGGAGCTGGAGCGCATCCACCAGAACCTCCAGTCCGCTCACGAGCAGAGCAAGACTCTCCACAATGCCAACACCGTCAAGGACCTCCGATCTCGCATGGACGCCGACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

60

Amino Acids

6.77

Weight (kDa)

5.44

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 8 - 59 2.1e-10 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 48
AccB1I GGYRCC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 1 cut(s) 105
AcyI GRCGYC 3 cut(s) 5, 45, 171
AhdI GACNNNNNGTC 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 2 cut(s) 67, 76
AluI AGCT 2 cut(s) 67, 76
Alw21I GWGCWC 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 151
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 151
BmeRI GACNNNNNGTC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 13
BmsI GCATC 1 cut(s) 93
BplI GAGNNNNNCTC 4 cut(s) 9, 41, 109, 141
BpmI CTGGAG 2 cut(s) 83, 98
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 3 cut(s) 5, 45, 171
BsaWI WCCGGW 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 9, 15
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 158
BssNI GRCGYC 3 cut(s) 5, 45, 171
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 3 cut(s) 5, 45, 171
BstF5I GGATG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 84
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 151
CviAII CATG 1 cut(s) 166
CviJI RGCY 2 cut(s) 67, 76
CviKI_1 RGCY 2 cut(s) 67, 76
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FatI CATG 1 cut(s) 165
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 69
GlaI GCGC 1 cut(s) 83
GsuI CTGGAG 2 cut(s) 83, 98
HapII CCGG 2 cut(s) 9, 15
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 3 cut(s) 5, 45, 171
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 3 cut(s) 18, 50, 124
HpaII CCGG 2 cut(s) 9, 15
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 158, 182
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 47, 50
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 3 cut(s) 5, 45, 171
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 73, 79
LpnPI CCDG 5 cut(s) 22, 28, 62, 104, 113
LweI GCATC 1 cut(s) 93
MaeII ACGT 1 cut(s) 45
MalI GATC 1 cut(s) 160
MbiI CCGCTC 1 cut(s) 107
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 3 cut(s) 27, 59, 118
MnlI CCTC 3 cut(s) 35, 107, 164
MspI CCGG 2 cut(s) 9, 15
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 158
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 51
PleI GAGTC 3 cut(s) 26, 58, 118
PpsI GAGTC 3 cut(s) 26, 58, 118
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 151
PspPPI RGGWCCY 1 cut(s) 151
SacI GAGCTC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 3 cut(s) 27, 59, 118
SduI GDGCHC 1 cut(s) 69
SetI ASST 7 cut(s) 27, 48, 69, 78, 99, 156, 180
SfaNI GCATC 1 cut(s) 93
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SsiI CCGC 1 cut(s) 105
SstI GAGCTC 1 cut(s) 69
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 27, 48
TspGWI ACGGA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 151
ZraI GACGTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.