RLG00000009210

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001517
Physical Location & Seq
Reverse (-)
48862794 .. 48865850
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009210

Sequence Viewer

Length: 483 bp
ATGGCGACGGCGTCCGGCACCGGAGTCAACCTCGACAAGTTCTTCGGCGACGTTGAGTCCGTCAAGGACGAGCTCAAGGAGCTGGAGCGCATCCACCAGAACCTCCAGTCCGCTCACGAGCAGAGCAAGACTCTCCACAACGCCAACACCGTCAAGGACCTCCGATCTCGGGTGGACGCCGACGTCACTCTCACTCTGAAGAAGGCGAAGGTGATCAAGGTCCTCCTCGAGGCGCTGGACCGGTCCAACGCCACGAACCGGAGCCTGCCAGGCTGCGGGCCGAGGTCGTTGTCTGATCGGACCAGGATTTCCTTCGTCAACGGGCTGAGGAAGAAGCTCAAGGACTCCATGGACAGCTTCAACTCCCTCCACCAGAAGATCTCCCTCGAGTACAGAGAGACCATCCAGCTCAGATACTACACCGTCTCCGGTGAGAATCCCGACGAGAAGAAGCTCGACCTCCTTATCTCCACAGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

9.18

Isoelectric Point (pI)

26.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 10 - 158 6.7e-42 Syntaxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AatII GACGTC 1 cut(s) 186
AbsI CCTCGAGG 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 2 cut(s) 111, 276
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 3 cut(s) 11, 177, 183
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 4 cut(s) 169, 229, 258, 275
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 1 cut(s) 361
AhdI GACNNNNNGTC 1 cut(s) 55
AjnI CCWGG 2 cut(s) 268, 302
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 7 cut(s) 73, 82, 337, 357, 409, 454, 476
AluI AGCT 7 cut(s) 73, 82, 337, 357, 409, 454, 476
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 2 cut(s) 392, 430
Ama87I CYCGRG 3 cut(s) 168, 227, 386
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 273
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsiGI ACCGGT 1 cut(s) 240
AspLEI GCGC 2 cut(s) 90, 235
AspS9I GGNCC 6 cut(s) 157, 220, 238, 243, 278, 300
AsuHPI GGTGA 2 cut(s) 223, 443
AvaI CYCGRG 3 cut(s) 168, 227, 386
AvaII GGWCC 5 cut(s) 157, 220, 238, 243, 300
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 75
BauI CACGAG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 270, 304
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 392, 430
BfoI RGCGCY 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 270
BglII AGATCT 1 cut(s) 378
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
Bme1390I CCNGG 2 cut(s) 270, 304
Bme18I GGWCC 5 cut(s) 157, 220, 238, 243, 300
BmeRI GACNNNNNGTC 1 cut(s) 55
BmeT110I CYCGRG 3 cut(s) 168, 227, 386
BmgT120I GGNCC 6 cut(s) 157, 220, 238, 243, 278, 300
BmiI GGNNCC 2 cut(s) 19, 263
BmrFI CCNGG 2 cut(s) 270, 304
BmsI GCATC 1 cut(s) 99
BplI GAGNNNNNCTC 4 cut(s) 15, 47, 115, 147
BpmI CTGGAG 2 cut(s) 89, 104
Bpu10I CCTNAGC 1 cut(s) 326
BpuEI CTTGAG 2 cut(s) 59, 323
BsaHI GRCGYC 3 cut(s) 11, 177, 183
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 2 cut(s) 281, 348
BsaWI WCCGGW 4 cut(s) 20, 240, 258, 428
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 229, 258, 275
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 2 cut(s) 270, 304
BseDI CCNNGG 2 cut(s) 281, 348
BseGI GGATG 2 cut(s) 90, 402
BseLI CCNNNNNNNGG 4 cut(s) 169, 229, 258, 275
BseMII CTCAG 2 cut(s) 317, 424
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 3 cut(s) 168, 227, 386
BsiSI CCGG 5 cut(s) 15, 21, 241, 259, 429
BslI CCNNNNNNNGG 4 cut(s) 169, 229, 258, 275
BsmAI GTCTC 2 cut(s) 392, 430
BsmBI CGTCTC 1 cut(s) 430
BsnI GGCC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 3 cut(s) 168, 227, 386
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 4 cut(s) 164, 213, 295, 378
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 2 cut(s) 111, 276
BspANI GGCC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 318, 423
BspLI GGNNCC 2 cut(s) 19, 263
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 281, 348
BssMI GATC 4 cut(s) 164, 213, 295, 378
BssNI GRCGYC 3 cut(s) 11, 177, 183
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 2 cut(s) 270, 304
Bst4CI ACNGT 2 cut(s) 151, 424
BstACI GRCGYC 3 cut(s) 11, 177, 183
BstC8I GCNNGC 2 cut(s) 266, 278
BstDEI CTNAG 2 cut(s) 326, 410
BstDSI CCRYGG 1 cut(s) 348
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 90, 402
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 2 cut(s) 90, 235
BstKTI GATC 4 cut(s) 167, 216, 298, 381
BstMAI GTCTC 2 cut(s) 392, 430
BstMBI GATC 4 cut(s) 164, 213, 295, 378
BstMWI GCNNNNNNNGC 2 cut(s) 79, 270
BstNI CCWGG 2 cut(s) 270, 304
BstSCI CCNGG 2 cut(s) 268, 302
BstV1I GCAGC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 378
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 90, 402
Cac8I GCNNGC 2 cut(s) 266, 278
CfoI GCGC 2 cut(s) 90, 235
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 6 cut(s) 157, 220, 238, 243, 278, 300
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 391
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 1 cut(s) 349
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 326, 410
DpnI GATC 4 cut(s) 166, 215, 297, 380
DpnII GATC 4 cut(s) 164, 213, 295, 378
DrdI GACNNNNNNGTC 1 cut(s) 182
DriI GACNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1105I GACNNNNNGTC 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 5 cut(s) 157, 220, 238, 243, 300
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 3 cut(s) 168, 227, 386
EcoICRI GAGCTC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 2 cut(s) 157, 220
EcoRII CCWGG 2 cut(s) 268, 302
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 430
FaeI CATG 1 cut(s) 352
FaiI YATR 1 cut(s) 350
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 2 cut(s) 77, 389
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 274
GlaI GCGC 2 cut(s) 89, 234
GluI GCNGC 1 cut(s) 274
GsuI CTGGAG 2 cut(s) 89, 104
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 280
HapII CCGG 5 cut(s) 15, 21, 241, 259, 429
HgaI GACGC 1 cut(s) 185
HhaI GCGC 2 cut(s) 90, 235
Hin1I GRCGYC 3 cut(s) 11, 177, 183
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 2 cut(s) 88, 233
HinP1I GCGC 2 cut(s) 88, 233
HincII GTYRAC 2 cut(s) 28, 319
HindII GTYRAC 2 cut(s) 28, 319
HinfI GANTC 5 cut(s) 24, 56, 130, 344, 436
HpaII CCGG 5 cut(s) 15, 21, 241, 259, 429
HphI GGTGA 2 cut(s) 223, 443
Hpy166II GTNNAC 3 cut(s) 28, 175, 319
Hpy188I TCNGA 5 cut(s) 164, 198, 295, 300, 413
Hpy188III TCNNGA 2 cut(s) 116, 440
Hpy8I GTNNAC 3 cut(s) 28, 175, 319
Hpy99I CGWCG 4 cut(s) 10, 53, 185, 446
HpyAV CCTTC 3 cut(s) 196, 202, 322
HpyCH4III ACNGT 2 cut(s) 151, 424
HpyCH4IV ACGT 2 cut(s) 51, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 270
HpyF3I CTNAG 2 cut(s) 326, 410
HpySE526I ACGT 2 cut(s) 51, 183
Hsp92I GRCGYC 3 cut(s) 11, 177, 183
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 2 cut(s) 88, 233
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 4 cut(s) 164, 213, 295, 378
LmnI GCTCC 3 cut(s) 79, 85, 261
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 1 cut(s) 99
MaeII ACGT 2 cut(s) 51, 183
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 166, 215, 297, 380
MbiI CCGCTC 1 cut(s) 113
MboI GATC 4 cut(s) 164, 213, 295, 378
MboII GAAGA 5 cut(s) 34, 211, 343, 388, 460
MflI RGATCY 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 478
MlyI GAGTC 4 cut(s) 33, 65, 124, 338
MmeI TCCRAC 1 cut(s) 270
MseI TTAA 1 cut(s) 481
MspI CCGG 5 cut(s) 15, 21, 241, 259, 429
MspR9I CCNGG 2 cut(s) 270, 304
MvaI CCWGG 2 cut(s) 270, 304
MwoI GCNNNNNNNGC 2 cut(s) 79, 270
NcoI CCATGG 1 cut(s) 348
NdeII GATC 4 cut(s) 164, 213, 295, 378
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 2 cut(s) 19, 263
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 184
PaeR7I CTCGAG 2 cut(s) 227, 386
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 147
PfeI GAWTC 1 cut(s) 436
PflFI GACNNNGTC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 4 cut(s) 32, 64, 124, 338
PpsI GAGTC 4 cut(s) 32, 64, 124, 338
PpuMI RGGWCCY 2 cut(s) 157, 220
Psp124BI GAGCTC 1 cut(s) 75
Psp5II RGGWCCY 2 cut(s) 157, 220
Psp6I CCWGG 2 cut(s) 268, 302
PspGI CCWGG 2 cut(s) 268, 302
PspN4I GGNNCC 2 cut(s) 19, 263
PspPI GGNCC 6 cut(s) 157, 220, 238, 243, 278, 300
PspPPI RGGWCCY 2 cut(s) 157, 220
PspXI VCTCGAGB 2 cut(s) 227, 386
PsuI RGATCY 1 cut(s) 378
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 481
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 4 cut(s) 164, 213, 295, 378
Sau96I GGNCC 6 cut(s) 157, 220, 238, 243, 278, 300
SchI GAGTC 4 cut(s) 33, 65, 124, 338
ScrFI CCNGG 2 cut(s) 270, 304
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 1 cut(s) 99
Sfr274I CTCGAG 2 cut(s) 227, 386
SinI GGWCC 5 cut(s) 157, 220, 238, 243, 300
SlaI CTCGAG 2 cut(s) 227, 386
SmlI CTYRAG 4 cut(s) 74, 227, 338, 386
SmoI CTYRAG 4 cut(s) 74, 227, 338, 386
Sse9I AATT 1 cut(s) 478
SsiI CCGC 2 cut(s) 111, 276
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 268, 302
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 151, 424
TaiI ACGT 2 cut(s) 54, 186
TaqI TCGA 4 cut(s) 33, 228, 387, 456
TasI AATT 1 cut(s) 478
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 5 cut(s) 157, 220, 238, 243, 300
XagI CCTNNNNNAGG 1 cut(s) 227
XhoI CTCGAG 2 cut(s) 227, 386
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.