Rmu_sc0008620.1_g000007

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008620.1
OG0001517
Physical Location & Seq
Reverse (-)
12241 .. 12986
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008620.1_g000007.1.cds

Sequence Viewer

Length: 435 bp
atgaacgacctgttttctggctctttctccaggttccgcagcgaacccgccaacaacgacgagcacgtcatcgagatgtcgttggcgacggcgtgcggcaccggagtcaacctcgacaagttcttcggcgacgtcgagtccgtcaaggacgagctcaaggagctggagcgcatccaccagaacctccagtccgctcacgagcagagcaagactctccacaacgccaacaccgtcaaggacctccgatctcgcatggacgccgacgtccgagctgtagaaatgatgaaatttgtgatctttgattgtgggtactataccgtctccggcgagaatcccgacgagaagaagctcgacctccttatctccacaagtaaaagcttcaatttaatttcttctccaaactccggcaatggcaaattcgtcatttcaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

5.17

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 65, 263
AatII GACGTC 2 cut(s) 135, 267
AccB1I GGYRCC 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 4 cut(s) 37, 48, 96, 192
AcsI RAATTY 2 cut(s) 287, 416
AcyI GRCGYC 3 cut(s) 132, 258, 264
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 404
AgsI TTSAA 2 cut(s) 382, 429
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 5 cut(s) 154, 163, 272, 349, 378
AluI AGCT 5 cut(s) 154, 163, 272, 349, 378
Alw21I GWGCWC 2 cut(s) 66, 156
Alw26I GTCTC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 39
ApoI RAATTY 2 cut(s) 287, 416
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 238
AvaII GGWCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 66, 156
BbvI GCAGC 1 cut(s) 51
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 40, 97
BlsI GCNGC 2 cut(s) 41, 98
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 238
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 238
BmiI GGNNCC 2 cut(s) 35, 100
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 180
BplI GAGNNNNNCTC 4 cut(s) 96, 128, 196, 228
BpmI CTGGAG 3 cut(s) 13, 170, 185
BpuEI CTTGAG 1 cut(s) 140
BsaHI GRCGYC 3 cut(s) 132, 258, 264
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 415
BseBI CCWGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 415
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 66, 156
BsiSI CCGG 3 cut(s) 102, 324, 405
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 66, 156
Bsp143I GATC 2 cut(s) 245, 294
BspACI CCGC 4 cut(s) 37, 48, 96, 192
BspLI GGNNCC 2 cut(s) 35, 100
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 415
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 245, 294
BssNI GRCGYC 3 cut(s) 132, 258, 264
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 232, 319
BstACI GRCGYC 3 cut(s) 132, 258, 264
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 248, 297
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 245, 294
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 51
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 253
CviJI RGCY 6 cut(s) 21, 154, 163, 272, 349, 378
CviKI_1 RGCY 6 cut(s) 21, 154, 163, 272, 349, 378
CviQI GTAC 1 cut(s) 310
DpnI GATC 2 cut(s) 247, 296
DpnII GATC 2 cut(s) 245, 294
DrdI GACNNNNNNGTC 2 cut(s) 65, 263
DriI GACNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 2 cut(s) 65, 263
Eam1105I GACNNNNNGTC 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 1 cut(s) 256
FaiI YATR 2 cut(s) 254, 315
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 40, 97
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 40, 97
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 40, 97
GsuI CTGGAG 3 cut(s) 13, 170, 185
HapII CCGG 3 cut(s) 102, 324, 405
HgaI GACGC 1 cut(s) 266
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 3 cut(s) 132, 258, 264
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 4 cut(s) 105, 137, 211, 331
HpaII CCGG 3 cut(s) 102, 324, 405
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 245, 269
Hpy188III TCNNGA 3 cut(s) 73, 197, 335
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 6 cut(s) 62, 91, 134, 137, 266, 341
HpyCH4III ACNGT 2 cut(s) 232, 319
HpyCH4IV ACGT 3 cut(s) 66, 132, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 3 cut(s) 66, 132, 264
Hsp92I GRCGYC 3 cut(s) 132, 258, 264
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 245, 294
LmnI GCTCC 2 cut(s) 160, 166
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 1 cut(s) 180
MaeII ACGT 3 cut(s) 66, 132, 264
MalI GATC 2 cut(s) 247, 296
MbiI CCGCTC 1 cut(s) 194
MboI GATC 2 cut(s) 245, 294
MboII GAAGA 3 cut(s) 115, 355, 384
MhlI GDGCHC 2 cut(s) 66, 156
MluCI AATT 5 cut(s) 287, 382, 387, 416, 429
MlyI GAGTC 3 cut(s) 114, 146, 205
MnlI CCTC 4 cut(s) 122, 194, 251, 365
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 3 cut(s) 102, 324, 405
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 245, 294
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 35, 100
PcsI WCGNNNNNNNCGW 4 cut(s) 63, 132, 138, 228
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 41, 98
PleI GAGTC 3 cut(s) 113, 145, 205
PpsI GAGTC 3 cut(s) 113, 145, 205
PpuMI RGGWCCY 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 35, 100
PspPI GGNCC 1 cut(s) 238
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 2 cut(s) 40, 97
Sau3AI GATC 2 cut(s) 245, 294
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 3 cut(s) 114, 146, 205
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 2 cut(s) 66, 156
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 5 cut(s) 287, 382, 387, 416, 429
SsiI CCGC 4 cut(s) 37, 48, 96, 192
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 232, 319
TaiI ACGT 3 cut(s) 69, 135, 267
TaqI TCGA 4 cut(s) 72, 114, 135, 351
TasI AATT 5 cut(s) 287, 382, 387, 416, 429
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TseI GCWGC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 17, 299
TspGWI ACGGA 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 2 cut(s) 287, 416
ZraI GACGTC 2 cut(s) 133, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.