Rmu_sc0002034.1_g000002

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002034.1
OG0001517
Physical Location & Seq
Forward (+)
3964 .. 4293
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002034.1_g000002.1.cds

Sequence Viewer

Length: 330 bp
atgatgaacgacctgttttctggctccttctccaggttcagcagcgaacccgccaacaacgacgagcacgtcatcgagatgtcgttggcgacggcgtccggcaccggagtcaacctcgacaagttctttggcgacgtcgagtccgtcaaggacgagctcaaggagctggagcgcatccaccagaacctccagtccgctcacgagcagagcaagactctccacaacgccaacaccgtcaaggacctccgatctcgcatggacgccgacctccgagctgtagaaatgatgaaatttgtgatctttgattgtgggtcttgtgtgtttatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

109

Amino Acids

12.26

Weight (kDa)

4.93

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 197
AciI CCGC 2 cut(s) 51, 195
AcsI RAATTY 1 cut(s) 290
AcyI GRCGYC 3 cut(s) 95, 135, 261
AfiI CCNNNNNNNGG 1 cut(s) 33
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 3 cut(s) 157, 166, 275
AluI AGCT 3 cut(s) 157, 166, 275
Alw21I GWGCWC 2 cut(s) 69, 159
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 110, 142
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 159
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 2 cut(s) 69, 159
BbvI GCAGC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 2 cut(s) 25, 103
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 183
BplI GAGNNNNNCTC 4 cut(s) 99, 131, 199, 231
BpmI CTGGAG 3 cut(s) 16, 173, 188
BpuEI CTTGAG 1 cut(s) 143
BsaHI GRCGYC 3 cut(s) 95, 135, 261
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 69, 159
BsiSI CCGG 2 cut(s) 99, 105
BslI CCNNNNNNNGG 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 69, 159
Bsp143I GATC 2 cut(s) 248, 297
BspACI CCGC 2 cut(s) 51, 195
BspLI GGNNCC 2 cut(s) 25, 103
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 190
BssMI GATC 2 cut(s) 248, 297
BssNI GRCGYC 3 cut(s) 95, 135, 261
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 235
BstACI GRCGYC 3 cut(s) 95, 135, 261
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 174
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 251, 300
BstMBI GATC 2 cut(s) 248, 297
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 54
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 174
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 241
CseI GACGC 2 cut(s) 84, 269
CviAII CATG 1 cut(s) 256
CviJI RGCY 4 cut(s) 24, 157, 166, 275
CviKI_1 RGCY 4 cut(s) 24, 157, 166, 275
DpnI GATC 2 cut(s) 250, 299
DpnII GATC 2 cut(s) 248, 297
DrdI GACNNNNNNGTC 1 cut(s) 68
DriI GACNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 259
FaiI YATR 1 cut(s) 257
FatI CATG 1 cut(s) 255
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 43
GlaI GCGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 3 cut(s) 16, 173, 188
HapII CCGG 2 cut(s) 99, 105
HgaI GACGC 2 cut(s) 84, 269
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 3 cut(s) 95, 135, 261
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 108, 140, 214
HpaII CCGG 2 cut(s) 99, 105
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 248, 272
Hpy188III TCNNGA 2 cut(s) 76, 200
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 4 cut(s) 65, 94, 137, 140
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 69, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 2 cut(s) 69, 135
Hsp92I GRCGYC 3 cut(s) 95, 135, 261
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 248, 297
LmnI GCTCC 3 cut(s) 29, 163, 169
LpnPI CCDG 9 cut(s) 6, 19, 26, 46, 112, 118, 152, 194, 203
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 183
MaeII ACGT 2 cut(s) 69, 135
MalI GATC 2 cut(s) 250, 299
MbiI CCGCTC 1 cut(s) 197
MboI GATC 2 cut(s) 248, 297
MhlI GDGCHC 2 cut(s) 69, 159
MluCI AATT 1 cut(s) 290
MlyI GAGTC 3 cut(s) 117, 149, 208
MnlI CCTC 4 cut(s) 125, 197, 254, 278
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 99, 105
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 248, 297
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 25, 103
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 141, 231
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 3 cut(s) 116, 148, 208
PpsI GAGTC 3 cut(s) 116, 148, 208
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 25, 103
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 248, 297
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 3 cut(s) 117, 149, 208
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 2 cut(s) 69, 159
SfaNI GCATC 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 290
SsiI CCGC 2 cut(s) 51, 195
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 72, 138
TaqI TCGA 3 cut(s) 75, 117, 138
TasI AATT 1 cut(s) 290
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 20, 302
TspGWI ACGGA 1 cut(s) 133
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 31
XapI RAATTY 1 cut(s) 290
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.