pycom14g03480

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001517
Physical Location & Seq
Forward (+)
2918455 .. 2920696
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03480.1

Sequence Viewer

Length: 888 bp
ATGAACGATCTGCTCTCTAGCTCCTTCTCCGAGGCCTCGCCGGACCACCATGTCATCGAAATGACTGCAACGTCCAACGAACTCAACAAGTTTTTCCAGGATGTGGAGTCGGTCCAGAACGAGCTCAATGAGCTCCAAAAGATCAATAAGAGCTTGCAAGGCGCACACGAGCAGAGCAAGAGTCTCCACAACTCCAAGGCTGTCAAGGACCTCCGAACCCGCATGGACGCGGATGTCCATACCGCCCTCAAGAACGCTAAGGTTCTTAAGGTACAGTTGGATGCGTTGGACAAGTCCAACGCTGCCAACCGGAGCTTGCCTGGTTGTGGTCCAGGGTCCTCATCTGACCGGACGCGGACGTCCGTGGTCAACGGGCTGAGGAAGAAGCTAAAGGATTCCATGGATAGCTTTAATGACTTGAGGAACAAGATCTCATCGGAGCACAGAGAGACCGTTCAGCGTAGGTACTTCACGGTCACCGGAGAGAACCCCGACGACAAAACCCTAGACCTTCTCATCTCTACAGGTGAGAGCGAGACATTTTTACAGAAGGCAATCCAAGAGCAAGGAAGAGGGAGAGTTTTAGACACCATACAAGAAATTCAAGAGAGACATGATGGTGTGAAGGCCATGGAGAGAAATCTGAACGAGTTGCACCAGGTGTTCATGGACATGGCAGTTCTCGTGCAAGCTCAAGGTGAACAGTTGGACGACATTCAGGGCCACGTGGAGAGAGCTAATTCATTTGTGCATTCTGGCACTCAGCAGTTGCAGAAAGCTAGATTCTTACAGAAAAACACACGTAAATGGACTTGTTATGGCATTATAATCTTGCTCATTATCATCGGGATTATATTGGCCTCAATACTGCCTAAAATATTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

296

Amino Acids

33.19

Weight (kDa)

6.81

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 26 - 186 9.4e-51 Syntaxin
SNARE PF05739 234 - 286 1.9e-16 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
AasI GACNNNNNNGTC 4 cut(s) 50, 70, 233, 358
AatII GACGTC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 103
AccII CGCG 2 cut(s) 230, 355
AciI CCGC 4 cut(s) 220, 230, 243, 355
AcsI RAATTY 1 cut(s) 600
AcvI CACGTG 1 cut(s) 727
AcyI GRCGYC 1 cut(s) 359
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 2 cut(s) 273, 467
AfiI CCNNNNNNNGG 2 cut(s) 103, 326
AflII CTTAAG 1 cut(s) 266
AflIII ACRYGT 1 cut(s) 800
AgsI TTSAA 1 cut(s) 605
AjnI CCWGG 4 cut(s) 96, 319, 331, 657
Alw21I GWGCWC 3 cut(s) 126, 135, 444
Alw26I GTCTC 4 cut(s) 188, 443, 530, 604
AoxI GGCC 4 cut(s) 33, 627, 721, 858
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 600
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 6 cut(s) 43, 112, 208, 329, 336, 721
AsuHPI GGTGA 3 cut(s) 469, 539, 710
AvaII GGWCC 5 cut(s) 43, 112, 208, 329, 336
BanII GRGCYC 2 cut(s) 126, 135
BauI CACGAG 2 cut(s) 167, 683
BbrPI CACGTG 1 cut(s) 727
Bbv12I GWGCWC 3 cut(s) 126, 135, 444
BbvCI CCTCAGC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 4 cut(s) 98, 321, 333, 659
BcoDI GTCTC 4 cut(s) 188, 443, 530, 604
BfaI CTAG 3 cut(s) 18, 506, 780
BfmI CTRYAG 1 cut(s) 522
BfrI CTTAAG 1 cut(s) 266
BglII AGATCT 1 cut(s) 429
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 4 cut(s) 98, 321, 333, 659
Bme18I GGWCC 5 cut(s) 43, 112, 208, 329, 336
BmgT120I GGNCC 6 cut(s) 43, 112, 208, 329, 336, 721
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 4 cut(s) 98, 321, 333, 659
BmsI GCATC 1 cut(s) 271
Bpu10I CCTNAGC 2 cut(s) 258, 377
BpuEI CTTGAG 3 cut(s) 233, 439, 678
BsaAI YACGTR 2 cut(s) 727, 803
BsaHI GRCGYC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 6 cut(s) 30, 195, 332, 363, 399, 630
BsaWI WCCGGW 3 cut(s) 309, 348, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 326
BseBI CCWGG 4 cut(s) 98, 321, 333, 659
BseDI CCNNGG 6 cut(s) 30, 195, 332, 363, 399, 630
BseGI GGATG 3 cut(s) 106, 238, 286
BseLI CCNNNNNNNGG 2 cut(s) 103, 326
BseMII CTCAG 2 cut(s) 368, 776
BseXI GCAGC 1 cut(s) 289
Bsh1236I CGCG 2 cut(s) 230, 355
BshFI GGCC 4 cut(s) 35, 629, 723, 860
BsiHKAI GWGCWC 3 cut(s) 126, 135, 444
BsiSI CCGG 4 cut(s) 41, 310, 349, 480
BslI CCNNNNNNNGG 2 cut(s) 103, 326
BsmAI GTCTC 4 cut(s) 188, 443, 530, 604
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 4 cut(s) 35, 629, 723, 860
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 3 cut(s) 126, 135, 444
Bsp143I GATC 3 cut(s) 7, 141, 429
Bsp19I CCATGG 2 cut(s) 399, 630
BspACI CCGC 4 cut(s) 220, 230, 243, 355
BspANI GGCC 4 cut(s) 35, 629, 723, 860
BspCNI CTCAG 2 cut(s) 369, 775
BspFNI CGCG 2 cut(s) 230, 355
BspLI GGNNCC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 443
BssECI CCNNGG 6 cut(s) 30, 195, 332, 363, 399, 630
BssMI GATC 3 cut(s) 7, 141, 429
BssNI GRCGYC 1 cut(s) 359
BssSI CACGAG 2 cut(s) 167, 683
BssT1I CCWWGG 3 cut(s) 195, 399, 630
Bst2BI CACGAG 2 cut(s) 167, 683
Bst2UI CCWGG 4 cut(s) 98, 321, 333, 659
Bst4CI ACNGT 4 cut(s) 276, 454, 475, 705
Bst6I CTCTTC 1 cut(s) 565
BstACI GRCGYC 1 cut(s) 359
BstAFI CTTAAG 1 cut(s) 266
BstBAI YACGTR 2 cut(s) 727, 803
BstC8I GCNNGC 3 cut(s) 155, 317, 690
BstDEI CTNAG 3 cut(s) 258, 377, 762
BstDSI CCRYGG 3 cut(s) 363, 399, 630
BstEII GGTNACC 1 cut(s) 475
BstF5I GGATG 3 cut(s) 106, 238, 286
BstFNI CGCG 2 cut(s) 230, 355
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 10, 144, 432
BstMAI GTCTC 4 cut(s) 188, 443, 530, 604
BstMBI GATC 3 cut(s) 7, 141, 429
BstMWI GCNNNNNNNGC 2 cut(s) 130, 159
BstNI CCWGG 4 cut(s) 98, 321, 333, 659
BstPI GGTNACC 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 96, 319, 331, 657
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 2 cut(s) 230, 355
BstV1I GCAGC 1 cut(s) 289
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 4 cut(s) 35, 629, 723, 860
BtgI CCRYGG 3 cut(s) 363, 399, 630
BtsCI GGATG 3 cut(s) 106, 238, 286
Cac8I GCNNGC 3 cut(s) 155, 317, 690
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 6 cut(s) 43, 112, 208, 329, 336, 721
CseI GACGC 2 cut(s) 236, 361
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 2 cut(s) 272, 466
CviAII CATG 7 cut(s) 50, 223, 400, 614, 631, 667, 673
CviQI GTAC 2 cut(s) 272, 466
DdeI CTNAG 3 cut(s) 258, 377, 762
DpnI GATC 3 cut(s) 9, 143, 431
DpnII GATC 3 cut(s) 7, 141, 429
DraIII CACNNNGTG 1 cut(s) 661
DrdI GACNNNNNNGTC 4 cut(s) 50, 70, 233, 358
DseDI GACNNNNNNGTC 4 cut(s) 50, 70, 233, 358
Eam1104I CTCTTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 565
Ecl136II GAGCTC 2 cut(s) 124, 133
Eco130I CCWWGG 3 cut(s) 195, 399, 630
Eco147I AGGCCT 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 126, 135
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 5 cut(s) 43, 112, 208, 329, 336
Eco53kI GAGCTC 2 cut(s) 124, 133
Eco72I CACGTG 1 cut(s) 727
Eco91I GGTNACC 1 cut(s) 475
EcoICRI GAGCTC 2 cut(s) 124, 133
EcoO109I RGGNCCY 2 cut(s) 208, 336
EcoO65I GGTNACC 1 cut(s) 475
EcoRII CCWGG 4 cut(s) 96, 319, 331, 657
EcoT14I CCWWGG 3 cut(s) 195, 399, 630
EcoT38I GRGCYC 2 cut(s) 126, 135
ErhI CCWWGG 3 cut(s) 195, 399, 630
FaeI CATG 7 cut(s) 53, 226, 403, 617, 634, 670, 676
FatI CATG 7 cut(s) 49, 222, 399, 613, 630, 666, 672
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 3 cut(s) 113, 245, 293
FriOI GRGCYC 2 cut(s) 126, 135
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 18, 506, 780
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 303
HaeIII GGCC 4 cut(s) 35, 629, 723, 860
HapII CCGG 4 cut(s) 41, 310, 349, 480
HgaI GACGC 2 cut(s) 236, 361
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 359
Hin1II CATG 7 cut(s) 53, 226, 403, 617, 634, 670, 676
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 4 cut(s) 107, 181, 395, 783
HpaII CCGG 4 cut(s) 41, 310, 349, 480
HphI GGTGA 3 cut(s) 469, 539, 710
Hpy166II GTNNAC 2 cut(s) 370, 701
Hpy188I TCNGA 5 cut(s) 31, 215, 346, 439, 645
Hpy188III TCNNGA 4 cut(s) 115, 250, 605, 847
Hpy8I GTNNAC 2 cut(s) 370, 701
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 4 cut(s) 34, 521, 544, 619
HpyCH4III ACNGT 4 cut(s) 276, 454, 475, 705
HpyCH4IV ACGT 4 cut(s) 71, 359, 726, 802
HpyCH4V TGCA 6 cut(s) 68, 157, 655, 688, 751, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 159
HpyF3I CTNAG 3 cut(s) 258, 377, 762
HpySE526I ACGT 4 cut(s) 71, 359, 726, 802
Hsp92I GRCGYC 1 cut(s) 359
Hsp92II CATG 7 cut(s) 53, 226, 403, 617, 634, 670, 676
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 3 cut(s) 7, 141, 429
LmnI GCTCC 4 cut(s) 26, 138, 312, 439
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 271
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 3 cut(s) 18, 506, 780
MaeII ACGT 4 cut(s) 71, 359, 726, 802
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 9, 143, 431
MboI GATC 3 cut(s) 7, 141, 429
MboII GAAGA 2 cut(s) 394, 582
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 3 cut(s) 126, 135, 444
MluCI AATT 3 cut(s) 600, 739, 883
MlyI GAGTC 2 cut(s) 116, 190
MmeI TCCRAC 5 cut(s) 99, 258, 267, 321, 687
MnlI CCTC 9 cut(s) 25, 46, 221, 257, 349, 372, 414, 566, 871
MseI TTAA 3 cut(s) 267, 411, 881
MslI CAYNNNNRTG 4 cut(s) 59, 618, 671, 805
MspCI CTTAAG 1 cut(s) 266
MspI CCGG 4 cut(s) 41, 310, 349, 480
MspR9I CCNGG 4 cut(s) 98, 321, 333, 659
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 4 cut(s) 98, 321, 333, 659
MvnI CGCG 2 cut(s) 230, 355
MwoI GCNNNNNNNGC 2 cut(s) 130, 159
NcoI CCATGG 2 cut(s) 399, 630
NdeII GATC 3 cut(s) 7, 141, 429
NlaIII CATG 7 cut(s) 53, 226, 403, 617, 634, 670, 676
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 475
PceI AGGCCT 1 cut(s) 35
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 2 cut(s) 395, 783
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 2 cut(s) 115, 189
PmaCI CACGTG 1 cut(s) 727
PmlI CACGTG 1 cut(s) 727
PpsI GAGTC 2 cut(s) 115, 189
Ppu21I YACGTR 2 cut(s) 727, 803
PpuMI RGGWCCY 2 cut(s) 208, 336
PsiI TTATAA 1 cut(s) 827
Psp124BI GAGCTC 2 cut(s) 126, 135
Psp5II RGGWCCY 2 cut(s) 208, 336
Psp6I CCWGG 4 cut(s) 96, 319, 331, 657
PspCI CACGTG 1 cut(s) 727
PspEI GGTNACC 1 cut(s) 475
PspGI CCWGG 4 cut(s) 96, 319, 331, 657
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 6 cut(s) 43, 112, 208, 329, 336, 721
PspPPI RGGWCCY 2 cut(s) 208, 336
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 2 cut(s) 273, 467
RsaNI GTAC 2 cut(s) 272, 466
RseI CAYNNNNRTG 4 cut(s) 59, 618, 671, 805
SacI GAGCTC 2 cut(s) 126, 135
SaqAI TTAA 3 cut(s) 267, 411, 881
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 3 cut(s) 7, 141, 429
Sau96I GGNCC 6 cut(s) 43, 112, 208, 329, 336, 721
SchI GAGTC 2 cut(s) 116, 190
ScrFI CCNGG 4 cut(s) 98, 321, 333, 659
SduI GDGCHC 3 cut(s) 126, 135, 444
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 522
SinI GGWCC 5 cut(s) 43, 112, 208, 329, 336
SmiMI CAYNNNNRTG 4 cut(s) 59, 618, 671, 805
SmlI CTYRAG 4 cut(s) 248, 266, 418, 693
SmoI CTYRAG 4 cut(s) 248, 266, 418, 693
Sse9I AATT 3 cut(s) 600, 739, 883
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 4 cut(s) 220, 230, 243, 355
SspI AATATT 1 cut(s) 879
SspMI CTAG 3 cut(s) 18, 506, 780
SstI GAGCTC 2 cut(s) 126, 135
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 4 cut(s) 96, 319, 331, 657
StyI CCWWGG 3 cut(s) 195, 399, 630
TaaI ACNGT 4 cut(s) 276, 454, 475, 705
TaiI ACGT 4 cut(s) 74, 362, 729, 805
TaqI TCGA 1 cut(s) 57
TaqII GACCGA 1 cut(s) 100
TasI AATT 3 cut(s) 600, 739, 883
TfiI GAWTC 2 cut(s) 395, 783
Tru1I TTAA 3 cut(s) 267, 411, 881
Tru9I TTAA 3 cut(s) 267, 411, 881
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 17, 655, 732
TspGWI ACGGA 1 cut(s) 352
Van91I CCANNNNNTGG 1 cut(s) 103
Vha464I CTTAAG 1 cut(s) 266
VpaK11BI GGWCC 5 cut(s) 43, 112, 208, 329, 336
XapI RAATTY 1 cut(s) 600
XspI CTAG 3 cut(s) 18, 506, 780
ZraI GACGTC 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.