Rroxscaffold_6G00413930

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001517
Physical Location & Seq
Forward (+)
36277438 .. 36279053
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413930.1

Sequence Viewer

Length: 522 bp
ATGAACGACATGTTTTCGGGCTCCTTCTCCAGGTTCCGCAGCCGAACCCGCCAACAACGACGAGCACGTCATCGAGATGTCGTTGGCAACGGCGTCCCGCACCGGAGTCAACCTCGACAAGTTCTTCGGCGACGTCGAGTCCGTCAAGGACGAGCTCAAGGAGCTGGAGCGCATCCACCGAACCTCCAATCCGCTCACGAGCAGAGCAAGACTCTCCACAACGCCAACACCGTCAAGGACCTCCGATCTCGCATGGACGCCGACCTCCGAGCCGTAGAAATGATGAAATTTGTGATCTTTGATTGTGGGTACTACACCGTCTCCGGCGAGAATCCCAACGAGAAGAAGCTCGACCTCCTTATCTCCACAGATTTGCAGGGCGAGCGAGGGGGACCTTGGTGCGATATTGCTGCAACACCGGAGCTTTCTCAAGCAGAACATGAGGAGCGGAAAGCAAGGGCCTTAGCTGCAGCTGCCACGGAGTTGGAAAGACTTCTCGAAAGGAAGATTTTGGTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

10.24

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AatII GACGTC 1 cut(s) 136
AccBSI CCGCTC 2 cut(s) 194, 448
AciI CCGC 5 cut(s) 37, 49, 98, 192, 448
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 3 cut(s) 93, 133, 258
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 9
AhdI GACNNNNNGTC 1 cut(s) 137
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 6 cut(s) 155, 164, 349, 424, 467, 473
AluI AGCT 6 cut(s) 155, 164, 349, 424, 467, 473
Alw21I GWGCWC 2 cut(s) 67, 157
Alw26I GTCTC 1 cut(s) 325
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 5 cut(s) 39, 410, 467, 470, 473
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 3 cut(s) 238, 392, 459
AvaII GGWCC 2 cut(s) 238, 392
BanII GRGCYC 2 cut(s) 23, 157
BauI CACGAG 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 67, 157
BbvI GCAGC 5 cut(s) 51, 397, 454, 460, 482
BceAI ACGGC 2 cut(s) 106, 257
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 468
BisI GCNGC 5 cut(s) 40, 411, 468, 471, 474
BlsI GCNGC 5 cut(s) 41, 412, 469, 472, 475
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 2 cut(s) 238, 392
BmeRI GACNNNNNGTC 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 238, 392, 459
BmiI GGNNCC 3 cut(s) 22, 35, 393
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 181
BplI GAGNNNNNCTC 4 cut(s) 97, 129, 196, 228
BpmI CTGGAG 2 cut(s) 13, 186
Bpu10I CCTNAGC 1 cut(s) 463
BpuEI CTTGAG 2 cut(s) 141, 414
BsaHI GRCGYC 3 cut(s) 93, 133, 258
BsaJI CCNNGG 2 cut(s) 395, 477
BsaWI WCCGGW 2 cut(s) 102, 418
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 395, 477
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 5 cut(s) 51, 397, 454, 460, 482
BshFI GGCC 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 67, 157
BsiSI CCGG 3 cut(s) 103, 324, 419
BslFI GGGAC 2 cut(s) 80, 405
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 80, 405
BsnI GGCC 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 23, 67, 157
Bsp143I GATC 2 cut(s) 245, 294
BspACI CCGC 5 cut(s) 37, 49, 98, 192, 448
BspANI GGCC 1 cut(s) 461
BspLI GGNNCC 3 cut(s) 22, 35, 393
BspMAI CTGCAG 1 cut(s) 472
BsrBI CCGCTC 2 cut(s) 194, 448
BssECI CCNNGG 2 cut(s) 395, 477
BssMI GATC 2 cut(s) 245, 294
BssNI GRCGYC 3 cut(s) 93, 133, 258
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 232, 319
BstACI GRCGYC 3 cut(s) 93, 133, 258
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 463
BstDSI CCRYGG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 248, 297
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 245, 294
BstMWI GCNNNNNNNGC 5 cut(s) 48, 161, 382, 467, 473
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 5 cut(s) 51, 397, 454, 460, 482
BstXI CCANNNNNNTGG 1 cut(s) 484
BsuRI GGCC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 238, 392, 459
CseI GACGC 2 cut(s) 82, 266
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 10, 253, 440
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 1 cut(s) 463
DpnI GATC 2 cut(s) 247, 296
DpnII GATC 2 cut(s) 245, 294
DrdI GACNNNNNNGTC 1 cut(s) 66
DriI GACNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 2 cut(s) 23, 157
Eco47I GGWCC 2 cut(s) 238, 392
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO109I RGGNCCY 3 cut(s) 238, 392, 459
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 23, 157
ErhI CCWWGG 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 3 cut(s) 13, 256, 443
FaiI YATR 3 cut(s) 11, 254, 441
FaqI GGGAC 2 cut(s) 80, 405
FatI CATG 3 cut(s) 9, 252, 439
FauI CCCGC 2 cut(s) 56, 105
Fnu4HI GCNGC 5 cut(s) 40, 411, 468, 471, 474
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 2 cut(s) 23, 157
Fsp4HI GCNGC 5 cut(s) 40, 411, 468, 471, 474
GlaI GCGC 1 cut(s) 171
GluI GCNGC 5 cut(s) 40, 411, 468, 471, 474
GsuI CTGGAG 2 cut(s) 13, 186
HaeIII GGCC 1 cut(s) 461
HapII CCGG 3 cut(s) 103, 324, 419
HgaI GACGC 2 cut(s) 82, 266
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 3 cut(s) 93, 133, 258
Hin1II CATG 3 cut(s) 13, 256, 443
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HinfI GANTC 4 cut(s) 106, 138, 211, 331
HpaII CCGG 3 cut(s) 103, 324, 419
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 245, 269
Hpy188III TCNNGA 3 cut(s) 74, 197, 497
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 3 cut(s) 63, 135, 138
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 232, 319
HpyCH4IV ACGT 2 cut(s) 67, 133
HpyCH4V TGCA 3 cut(s) 376, 413, 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 161, 382, 467, 473
HpyF3I CTNAG 1 cut(s) 463
HpySE526I ACGT 2 cut(s) 67, 133
Hsp92I GRCGYC 3 cut(s) 93, 133, 258
Hsp92II CATG 3 cut(s) 13, 256, 443
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 245, 294
LmnI GCTCC 5 cut(s) 26, 161, 167, 421, 445
LpnPI CCDG 7 cut(s) 16, 43, 116, 150, 337, 362, 432
Lsp1109I GCAGC 5 cut(s) 51, 397, 454, 460, 482
LweI GCATC 1 cut(s) 181
MaeII ACGT 2 cut(s) 67, 133
MalI GATC 2 cut(s) 247, 296
MbiI CCGCTC 2 cut(s) 194, 448
MboI GATC 2 cut(s) 245, 294
MboII GAAGA 3 cut(s) 116, 355, 517
MhlI GDGCHC 3 cut(s) 23, 67, 157
MluCI AATT 1 cut(s) 287
MlyI GAGTC 3 cut(s) 115, 147, 205
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 7 cut(s) 123, 194, 251, 275, 365, 380, 436
MroXI GAANNNNTTC 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 3 cut(s) 103, 324, 419
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 5 cut(s) 48, 161, 382, 467, 473
NdeII GATC 2 cut(s) 245, 294
NlaIII CATG 3 cut(s) 13, 256, 443
NlaIV GGNNCC 3 cut(s) 22, 35, 393
NspI RCATGY 1 cut(s) 13
PciI ACATGT 1 cut(s) 9
PcsI WCGNNNNNNNCGW 4 cut(s) 64, 133, 139, 228
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 5 cut(s) 41, 412, 469, 472, 475
PleI GAGTC 3 cut(s) 114, 146, 205
PpsI GAGTC 3 cut(s) 114, 146, 205
PpuMI RGGWCCY 2 cut(s) 238, 392
PscI ACATGT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 157
Psp5II RGGWCCY 2 cut(s) 238, 392
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 22, 35, 393
PspPI GGNCC 3 cut(s) 238, 392, 459
PspPPI RGGWCCY 2 cut(s) 238, 392
PstI CTGCAG 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 157
SatI GCNGC 5 cut(s) 40, 411, 468, 471, 474
Sau3AI GATC 2 cut(s) 245, 294
Sau96I GGNCC 3 cut(s) 238, 392, 459
SchI GAGTC 3 cut(s) 115, 147, 205
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 3 cut(s) 23, 67, 157
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 2 cut(s) 238, 392
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 156, 429
SmoI CTYRAG 2 cut(s) 156, 429
Sse9I AATT 1 cut(s) 287
SsiI CCGC 5 cut(s) 37, 49, 98, 192, 448
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 232, 319
TaiI ACGT 2 cut(s) 70, 136
TaqI TCGA 5 cut(s) 73, 115, 136, 351, 498
TasI AATT 1 cut(s) 287
TfiI GAWTC 1 cut(s) 331
TseI GCWGC 5 cut(s) 39, 410, 467, 470, 473
TspDTI ATGAA 2 cut(s) 17, 299
TspGWI ACGGA 2 cut(s) 131, 494
VpaK11BI GGWCC 2 cut(s) 238, 392
XagI CCTNNNNNAGG 1 cut(s) 28
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 492
ZraI GACGTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.