Rorug03G0153500

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001517
Physical Location & Seq
Reverse (-)
12628730 .. 12634588
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0153500.1

Sequence Viewer

Length: 2457 bp
ATGAGAGTGTTGGTCATCCTTGGCTACACTATCTCTTCAATCTCCACTCCCCCAAATCCCAATGGCAACCGCTCCACCAAACCCTACAAGCCCCCAATCCCCAAGCTCTCCCCTTCCAAATCCTCCCCTCCAATCTCCACCCTCCATTCCCGGCCGCCGCCTCTCTTCGCCGGCCGCTGGGACCCCCGCAACACCCACCTCTCCTACTTCGCCGACCTCGCCTCCAAGCTCGCCCGCGACGGCAAGCTCGACGACTTCGCCATGATCGCCGAGAGCGTCGTCCTCTCCGGCGTCAAGGCCTCGCAGTTCGCCGCCGCGCTCAAGGTCGACATGGTCGCCAGGGGCATTTCCGGGTTTTTGAAGGAGGGGAAGGTCAGGGGCGTCCTGGAGGTGTTGATCAAAGTCGACGAGCTTGGGGTTCGGCCGCTGGAGCTGTTTGATGGCTACGCTATGGAGTTGCTGGCAGGACATTGTCACCGCCTTTTGAAATTCAAGCAAGTTCAGGAACTTGTTGAGCTTATGGAGGTTCTTTCAGGTTTGCATTTCCCAATCAAAGAACTGGTGGAGCCATCTGAAGTCATCAAAACATGTGTCGATAAACGTAGCCCGAAATTGGCCATAAGGTATGCTTGTATTTTTCCACATGCGCATATCTTATTCTGTAACATTATGAATGAGTTTGGAAAGAGGAGGGCATTGGCGTCTGCTTTGACAGCATATGAAGCATCTAAGGCAAAATTGAGTGGTTCTAATATGTACATCTACCGCACAATAATTGACGTCTGTGGTGTCTGCAAAGACTACATGAAATCTAGGTACATTTATGAGGACTTGCTCAAACAGAAGGTCATTCCGAATATATATGTTTTCAACAGTCTGATGAATGTGAACTCACATGATCTGAGCTACACATTTCATGTATACAAGAGTATGCAGAATCTTGGTGTCAAAGCAGATTTGGCATGTTACAATATTCTTTTGAAGGCATGCTGTCTCGCTGGAAGAGTTGATCTGGCACAAGATATTTATAGGGAATTACAGCATTTGGAATCGACAGGAGTGTTGAAATTGGATGTCTTCACTTACAGCACTATTGTAAAGGTCTTTTCAGATGCAAAAATGTGGCACATGGCTTTAAATGTCAAAGAAGATATGCTAGCAGCAGGTGTTATGCCAAATACAATTACATGGTCATCATTGATCAGTGCCTGTGCAAATGCAGGTCTTGTGGATAAGGCAATTCAATTGTTTGAAGAGATGCTCTTGGCCGGCTGTGAACCTAATTCACAGTGCTTTAACATCCTTCTGCATGCTTGTGTTGAGGCTTGCCAGTATGACAGGGCTTTTCGCCTTTTCCATTCTTTTAAGAGTAATAAGGTCCAGGAGACTTTTGGCAAAAACTACAAAGGGCTTTCTTTTAAACCCACAACTACAACATACAATACTTTGATGAAGGCCTGTGGGTCTGACTACTACCATGCAAGAGCACTGATGGATGAGATGAAAACAGTAGGTCTTTTTCCTAATCAAATAACATGGTCGATTTTGGCTGATATATGTGGAAGCTCGGGGAATGTTGAGGGTGCCTTGCAGATCTTGAAAAGTATGCGTGTAGCTGGGATCCAACCTGATGTTGTTGCCTATACAACAGCCATCAAGATCTGCGTGGAAAGTGAAAATTTGGACTTAGCATTGTCACTGTTTGCAGAAATGAAAAAATATCAGATACACCCAAATTTGGTGACATATAATACACTTTTAAGGGCTCGTAGCAGATATGGTTCTGTAAGTGAAGTACAACAATGCCTGGCTATATATCAGGACATGCGGAAAGCAGGTTACAAGCCCAATGATTATTACCTTGAGCAACTAATTGAGGAATGGTGTGAAGGAGTTATACAAGACAGCAGCCCGAAACAAGGTGAGTTCAGTTACTGGGACAAAGCTGGCATTGGGAGACCTGGAAGTGTGCTTCTTGAAAAAGTTGCAGAACACTTACAACAGCATATTGCTGACACTTTAGCAGTTGACCTTCAAGGACTTACAAAGGTTGAAGCTCGGATAGTTGTTCTTGCAGTTCTGCGAATGATCAAAGAGAACTATACCTTAGGAGATTCGGTAAAAGATGACATGTTGATCATGGTAGGAGTCCATGATGAGGTTGATGGAGGCTCAACAGCTCACAATTTAGAGGTCATAGATGCAATAACCAAGCTTCTACAGGATGAATTGGGGCTCAAGGTTCTTTCAACAGTACCTAAAGTTGCACTTGATACTACAATAGTATCCGAGAACAATATAGATTCGGATCAAAATTTGGAAGAAAAGCCAGTAAGGAATGAATTACACTCGGAGTTGATTTATTCCACTAGAAGACCCGTGGTTCTGGAAAGGCTAAAGGTATCCAGGAAATCATTGCAACAATGGCTGCGAAAAAGAAGTTCCCTTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

818

Amino Acids

91.63

Weight (kDa)

8.41

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 225 - 353 1.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_long PF17177 298 - 458 1.9e-13 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 322 - 455 2.3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 355 - 406 4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 358 - 406 4.5e-09 PPR repeat family
PPR_3 PF13812 381 - 441 5.8e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 389 - 420 1.1e-09 PPR repeat
PPR_2 PF13041 392 - 440 3.9e-14 PPR repeat family
PPR PF01535 395 - 425 2.8e-08 PPR repeat
PPR_long PF17177 480 - 624 3.1e-12 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 532 - 589 2.8e-14 Pentatricopeptide repeat domain
PPR_2 PF13041 543 - 589 6.4e-13 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1154
AatII GACGTC 1 cut(s) 783
Acc16I TGCGCA 1 cut(s) 648
Acc36I ACCTGC 3 cut(s) 1154, 1211, 1826
AccB1I GGYRCC 1 cut(s) 1583
AccBSI CCGCTC 1 cut(s) 72
AccI GTMKAC 3 cut(s) 327, 405, 921
AccII CGCG 2 cut(s) 237, 317
AclWI GGATC 3 cut(s) 1615, 1628, 2316
AcoI YGGCCR 5 cut(s) 152, 172, 422, 615, 1266
AcsI RAATTY 4 cut(s) 488, 1678, 1735, 2314
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 4 cut(s) 291, 381, 701, 780
AfaI GTAC 4 cut(s) 758, 818, 1797, 2256
AfiI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
AflIII ACRYGT 2 cut(s) 587, 2130
AjnI CCWGG 6 cut(s) 338, 384, 1380, 1806, 1960, 2405
Alw21I GWGCWC 1 cut(s) 1489
Alw26I GTCTC 3 cut(s) 998, 1379, 1951
AlwI GGATC 3 cut(s) 1615, 1628, 2316
AlwNI CAGNNNCTG 2 cut(s) 1209, 1935
Ama87I CYCGRG 1 cut(s) 1567
AoxI GGCC 7 cut(s) 152, 172, 297, 422, 615, 1266, 1455
ApeKI GCWGC 3 cut(s) 1160, 1908, 2428
ApoI RAATTY 4 cut(s) 488, 1678, 1735, 2314
ArsI GACNNNNNNTTYG 4 cut(s) 576, 608, 831, 863
AspLEI GCGC 2 cut(s) 319, 649
AspS9I GGNCC 2 cut(s) 181, 1378
AsuC2I CCSGG 2 cut(s) 151, 352
AsuHPI GGTGA 3 cut(s) 467, 1753, 1934
AsuNHI GCTAGC 1 cut(s) 1156
AvaI CYCGRG 1 cut(s) 1567
AvaII GGWCC 2 cut(s) 181, 1378
AxyI CCTNAGG 2 cut(s) 2107, 2447
BaeI ACNNNNGTAYC 2 cut(s) 2268, 2301
BalI TGGCCA 1 cut(s) 617
BamHI GGATCC 1 cut(s) 1620
BanI GGYRCC 1 cut(s) 1583
BanII GRGCYC 2 cut(s) 1768, 2238
BarI GAAGNNNNNNTAC 2 cut(s) 1881, 1913
BbsI GAAGAC 2 cut(s) 1069, 2380
Bbv12I GWGCWC 1 cut(s) 1489
BbvI GCAGC 3 cut(s) 1172, 1920, 2415
BccI CCATC 5 cut(s) 434, 577, 1486, 1661, 2159
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 6 cut(s) 340, 386, 1382, 1808, 1962, 2407
BciVI GTATCC 2 cut(s) 2296, 2413
BclI TGATCA 4 cut(s) 396, 1200, 2088, 2136
BcnI CCSGG 2 cut(s) 151, 352
BcoDI GTCTC 3 cut(s) 998, 1379, 1951
BfaI CTAG 3 cut(s) 813, 1157, 2370
BfmI CTRYAG 1 cut(s) 2219
BfuAI ACCTGC 3 cut(s) 1154, 1211, 1826
BfuI GTATCC 2 cut(s) 2296, 2413
BglII AGATCT 2 cut(s) 1593, 1659
BisI GCNGC 9 cut(s) 155, 158, 175, 312, 315, 425, 1161, 1909, 2429
BlsI GCNGC 9 cut(s) 156, 159, 176, 313, 316, 426, 1162, 1910, 2430
Bme1390I CCNGG 8 cut(s) 151, 340, 352, 386, 1382, 1808, 1962, 2407
Bme18I GGWCC 2 cut(s) 181, 1378
BmeT110I CYCGRG 1 cut(s) 1567
BmgT120I GGNCC 2 cut(s) 181, 1378
BmiI GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
BmrFI CCNGG 8 cut(s) 151, 340, 352, 386, 1382, 1808, 1962, 2407
BmrI ACTGGG 1 cut(s) 1945
BmsI GCATC 4 cut(s) 734, 1102, 1248, 2191
BmtI GCTAGC 1 cut(s) 1160
BmuI ACTGGG 1 cut(s) 1945
BpiI GAAGAC 2 cut(s) 1069, 2380
BpmI CTGGAG 2 cut(s) 407, 449
BpuEI CTTGAG 3 cut(s) 305, 1883, 2222
BpuMI CCSGG 2 cut(s) 151, 352
BsaBI GATNNNNATC 1 cut(s) 2307
BsaHI GRCGYC 4 cut(s) 291, 381, 701, 780
BsaI GGTCTC 1 cut(s) 1951
BsaJI CCNNGG 3 cut(s) 19, 339, 2379
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 2103, 2133
Bsc4I CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
Bse118I RCCGGY 2 cut(s) 170, 1268
Bse1I ACTGG 4 cut(s) 564, 1330, 1940, 2330
Bse21I CCTNAGG 2 cut(s) 2107, 2447
Bse3DI GCAATG 1 cut(s) 2414
Bse8I GATNNNNATC 1 cut(s) 2307
BseBI CCWGG 6 cut(s) 340, 386, 1382, 1808, 1962, 2407
BseDI CCNNGG 3 cut(s) 19, 339, 2379
BseGI GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BseJI GATNNNNATC 1 cut(s) 2307
BseLI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
BseMI GCAATG 1 cut(s) 2414
BseMII CTCAG 1 cut(s) 893
BseNI ACTGG 4 cut(s) 564, 1330, 1940, 2330
BseRI GAGGAG 1 cut(s) 703
BseX3I CGGCCG 3 cut(s) 152, 172, 422
BseXI GCAGC 3 cut(s) 1172, 1920, 2415
BseYI CCCAGC 2 cut(s) 177, 1616
Bsh1236I CGCG 2 cut(s) 237, 317
Bsh1285I CGRYCG 3 cut(s) 155, 175, 425
BshFI GGCC 7 cut(s) 154, 174, 299, 424, 617, 1268, 1457
BshNI GGYRCC 1 cut(s) 1583
BsiEI CGRYCG 3 cut(s) 155, 175, 425
BsiHKAI GWGCWC 1 cut(s) 1489
BsiHKCI CYCGRG 1 cut(s) 1567
BsiSI CCGG 5 cut(s) 151, 171, 288, 351, 1269
BslFI GGGAC 2 cut(s) 194, 1952
BslI CCNNNNNNNGG 6 cut(s) 177, 613, 1738, 1919, 2158, 2451
BsmAI GTCTC 3 cut(s) 998, 1379, 1951
BsmFI GGGAC 2 cut(s) 194, 1952
BsnI GGCC 7 cut(s) 154, 174, 299, 424, 617, 1268, 1457
Bso31I GGTCTC 1 cut(s) 1951
BsoBI CYCGRG 1 cut(s) 1567
Bsp1286I GDGCHC 3 cut(s) 1489, 1768, 2238
Bsp1407I TGTACA 1 cut(s) 756
BspANI GGCC 7 cut(s) 154, 174, 299, 424, 617, 1268, 1457
BspCNI CTCAG 1 cut(s) 894
BspFNI CGCG 2 cut(s) 237, 317
BspLI GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
BspMI ACCTGC 3 cut(s) 1154, 1211, 1826
BspOI GCTAGC 1 cut(s) 1160
BspPI GGATC 3 cut(s) 1615, 1628, 2316
BspT107I GGYRCC 1 cut(s) 1583
BspTNI GGTCTC 1 cut(s) 1951
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 2414
BsrFI RCCGGY 2 cut(s) 170, 1268
BsrGI TGTACA 1 cut(s) 756
BsrI ACTGG 4 cut(s) 564, 1330, 1940, 2330
BssAI RCCGGY 2 cut(s) 170, 1268
BssECI CCNNGG 3 cut(s) 19, 339, 2379
BssNAI GTATAC 1 cut(s) 922
BssNI GRCGYC 4 cut(s) 291, 381, 701, 780
BssT1I CCWWGG 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 922
Bst2UI CCWGG 6 cut(s) 340, 386, 1382, 1808, 1962, 2407
Bst4CI ACNGT 5 cut(s) 875, 1290, 1510, 1701, 2254
Bst6I CTCTTC 4 cut(s) 40, 170, 997, 1248
BstACI GRCGYC 4 cut(s) 291, 381, 701, 780
BstAUI TGTACA 1 cut(s) 756
BstDEI CTNAG 5 cut(s) 729, 902, 1687, 2107, 2447
BstDSI CCRYGG 1 cut(s) 2379
BstF5I GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BstFNI CGCG 2 cut(s) 237, 317
BstHHI GCGC 2 cut(s) 319, 649
BstMAI GTCTC 3 cut(s) 998, 1379, 1951
BstMCI CGRYCG 3 cut(s) 155, 175, 425
BstMWI GCNNNNNNNGC 8 cut(s) 218, 266, 430, 713, 722, 731, 959, 2425
BstNI CCWGG 6 cut(s) 340, 386, 1382, 1808, 1962, 2407
BstNSI RCATGY 7 cut(s) 591, 647, 966, 990, 1313, 1828, 2134
BstSCI CCNGG 8 cut(s) 149, 338, 350, 384, 1380, 1806, 1960, 2405
BstSFI CTRYAG 1 cut(s) 2219
BstUI CGCG 2 cut(s) 237, 317
BstV1I GCAGC 3 cut(s) 1172, 1920, 2415
BstV2I GAAGAC 2 cut(s) 1069, 2380
BstX2I RGATCY 3 cut(s) 1593, 1620, 1659
BstYI RGATCY 3 cut(s) 1593, 1620, 1659
BstZ17I GTATAC 1 cut(s) 922
BstZI CGGCCG 3 cut(s) 152, 172, 422
Bsu36I CCTNAGG 2 cut(s) 2107, 2447
BsuI GTATCC 2 cut(s) 2296, 2413
BsuRI GGCC 7 cut(s) 154, 174, 299, 424, 617, 1268, 1457
BtgI CCRYGG 1 cut(s) 2379
BtsCI GGATG 5 cut(s) 15, 1078, 1299, 1501, 2230
BtsIMutI CAGTG 4 cut(s) 1210, 1295, 1487, 1697
BveI ACCTGC 3 cut(s) 1154, 1211, 1826
CaiI CAGNNNCTG 2 cut(s) 1209, 1935
CfoI GCGC 2 cut(s) 319, 649
Cfr10I RCCGGY 2 cut(s) 170, 1268
Cfr13I GGNCC 2 cut(s) 181, 1378
CseI GACGC 4 cut(s) 265, 280, 370, 690
Csp6I GTAC 4 cut(s) 757, 817, 1796, 2255
CviQI GTAC 4 cut(s) 757, 817, 1796, 2255
DdeI CTNAG 5 cut(s) 729, 902, 1687, 2107, 2447
DraI TTTAAA 2 cut(s) 1137, 1420
EaeI YGGCCR 5 cut(s) 152, 172, 422, 615, 1266
EagI CGGCCG 3 cut(s) 152, 172, 422
Eam1104I CTCTTC 4 cut(s) 40, 170, 997, 1248
EarI CTCTTC 4 cut(s) 40, 170, 997, 1248
EclXI CGGCCG 3 cut(s) 152, 172, 422
Eco130I CCWWGG 1 cut(s) 19
Eco147I AGGCCT 2 cut(s) 299, 1457
Eco24I GRGCYC 2 cut(s) 1768, 2238
Eco31I GGTCTC 1 cut(s) 1951
Eco47I GGWCC 2 cut(s) 181, 1378
Eco52I CGGCCG 3 cut(s) 152, 172, 422
Eco57I CTGAAG 1 cut(s) 594
Eco81I CCTNAGG 2 cut(s) 2107, 2447
Eco88I CYCGRG 1 cut(s) 1567
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 6 cut(s) 338, 384, 1380, 1806, 1960, 2405
EcoT14I CCWWGG 1 cut(s) 19
EcoT38I GRGCYC 2 cut(s) 1768, 2238
ErhI CCWWGG 1 cut(s) 19
FalI AAGNNNNNCTT 4 cut(s) 613, 645, 2253, 2285
FaqI GGGAC 2 cut(s) 194, 1952
FauI CCCGC 2 cut(s) 194, 242
FauNDI CATATG 1 cut(s) 718
FbaI TGATCA 4 cut(s) 396, 1200, 2088, 2136
FblI GTMKAC 3 cut(s) 327, 405, 921
Fnu4HI GCNGC 9 cut(s) 155, 158, 175, 312, 315, 425, 1161, 1909, 2429
FokI GGATG 5 cut(s) 2, 1085, 1286, 1508, 2237
FriOI GRGCYC 2 cut(s) 1768, 2238
Fsp4HI GCNGC 9 cut(s) 155, 158, 175, 312, 315, 425, 1161, 1909, 2429
FspAI RTGCGCAY 1 cut(s) 648
FspBI CTAG 3 cut(s) 813, 1157, 2370
FspI TGCGCA 1 cut(s) 648
GlaI GCGC 2 cut(s) 318, 648
GluI GCNGC 9 cut(s) 155, 158, 175, 312, 315, 425, 1161, 1909, 2429
GsaI CCCAGC 2 cut(s) 181, 1620
GsuI CTGGAG 2 cut(s) 407, 449
HaeIII GGCC 7 cut(s) 154, 174, 299, 424, 617, 1268, 1457
HapII CCGG 5 cut(s) 151, 171, 288, 351, 1269
HgaI GACGC 4 cut(s) 265, 280, 370, 690
HhaI GCGC 2 cut(s) 319, 649
Hin1I GRCGYC 4 cut(s) 291, 381, 701, 780
Hin6I GCGC 2 cut(s) 317, 647
HinP1I GCGC 2 cut(s) 317, 647
HincII GTYRAC 3 cut(s) 328, 406, 2029
HindII GTYRAC 3 cut(s) 328, 406, 2029
HindIII AAGCTT 1 cut(s) 2213
HinfI GANTC 5 cut(s) 937, 1049, 2114, 2148, 2303
HpaII CCGG 5 cut(s) 151, 171, 288, 351, 1269
HphI GGTGA 3 cut(s) 467, 1753, 1934
Hpy166II GTNNAC 6 cut(s) 328, 406, 889, 922, 1277, 2029
Hpy188III TCNNGA 6 cut(s) 503, 1597, 1657, 1820, 1976, 2387
Hpy8I GTNNAC 6 cut(s) 328, 406, 889, 922, 1277, 2029
Hpy99I CGWCG 4 cut(s) 242, 254, 281, 410
HpyAV CCTTC 9 cut(s) 123, 355, 364, 838, 976, 1313, 1447, 1883, 2042
HpyCH4III ACNGT 5 cut(s) 875, 1290, 1510, 1701, 2254
HpyCH4IV ACGT 2 cut(s) 601, 780
HpyF10VI GCNNNNNNNGC 8 cut(s) 218, 266, 430, 713, 722, 731, 959, 2425
HpyF3I CTNAG 5 cut(s) 729, 902, 1687, 2107, 2447
HpySE526I ACGT 2 cut(s) 601, 780
Hsp92I GRCGYC 4 cut(s) 291, 381, 701, 780
HspAI GCGC 2 cut(s) 317, 647
KflI GGGWCCC 1 cut(s) 181
KroI GCCGGC 2 cut(s) 170, 1268
KroNI GCCGGC 2 cut(s) 172, 1270
Ksp22I TGATCA 4 cut(s) 396, 1200, 2088, 2136
LmnI GCTCC 3 cut(s) 77, 430, 565
Lsp1109I GCAGC 3 cut(s) 1172, 1920, 2415
LweI GCATC 4 cut(s) 734, 1102, 1248, 2191
MaeI CTAG 3 cut(s) 813, 1157, 2370
MaeII ACGT 2 cut(s) 601, 780
MaeIII GTNAC 7 cut(s) 473, 662, 965, 1695, 1741, 1838, 1931
MbiI CCGCTC 1 cut(s) 72
MboII GAAGA 8 cut(s) 27, 157, 1014, 1069, 1160, 1265, 2333, 2385
MfeI CAATTG 1 cut(s) 1244
MflI RGATCY 3 cut(s) 1593, 1620, 1659
MhlI GDGCHC 3 cut(s) 1489, 1768, 2238
MlsI TGGCCA 1 cut(s) 617
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 2157
MmeI TCCRAC 1 cut(s) 1648
Mox20I TGGCCA 1 cut(s) 617
MroNI GCCGGC 2 cut(s) 170, 1268
MscI TGGCCA 1 cut(s) 617
MseI TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
MslI CAYNNNNRTG 1 cut(s) 1314
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 2 cut(s) 177, 427
MspI CCGG 5 cut(s) 151, 171, 288, 351, 1269
MspR9I CCNGG 8 cut(s) 151, 340, 352, 386, 1382, 1808, 1962, 2407
MunI CAATTG 1 cut(s) 1244
MvaI CCWGG 6 cut(s) 340, 386, 1382, 1808, 1962, 2407
MvnI CGCG 2 cut(s) 237, 317
MwoI GCNNNNNNNGC 8 cut(s) 218, 266, 430, 713, 722, 731, 959, 2425
NaeI GCCGGC 2 cut(s) 172, 1270
NciI CCSGG 2 cut(s) 151, 352
NdeI CATATG 1 cut(s) 718
NgoMIV GCCGGC 2 cut(s) 170, 1268
NheI GCTAGC 1 cut(s) 1156
NlaIV GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 3 cut(s) 473, 1695, 1741
NsbI TGCGCA 1 cut(s) 648
NspI RCATGY 7 cut(s) 591, 647, 966, 990, 1313, 1828, 2134
PaeI GCATGC 2 cut(s) 990, 1313
PaqCI CACCTGC 1 cut(s) 1154
PceI AGGCCT 2 cut(s) 299, 1457
PciI ACATGT 2 cut(s) 587, 2130
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 273
PdiI GCCGGC 2 cut(s) 172, 1270
PfeI GAWTC 4 cut(s) 937, 1049, 2114, 2303
PflFI GACNNNGTC 2 cut(s) 332, 471
PfoI TCCNGGA 3 cut(s) 384, 1380, 2405
PkrI GCNGC 9 cut(s) 156, 159, 176, 313, 316, 426, 1162, 1910, 2430
PleI GAGTC 1 cut(s) 2156
PpsI GAGTC 1 cut(s) 2156
PpuMI RGGWCCY 1 cut(s) 181
PscI ACATGT 2 cut(s) 587, 2130
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 6 cut(s) 338, 384, 1380, 1806, 1960, 2405
PspFI CCCAGC 2 cut(s) 177, 1616
PspGI CCWGG 6 cut(s) 338, 384, 1380, 1806, 1960, 2405
PspN4I GGNNCC 5 cut(s) 182, 183, 567, 1585, 1622
PspPI GGNCC 2 cut(s) 181, 1378
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 2 cut(s) 1209, 1935
PsuI RGATCY 3 cut(s) 1593, 1620, 1659
PsyI GACNNNGTC 2 cut(s) 332, 471
RsaI GTAC 4 cut(s) 758, 818, 1797, 2256
RsaNI GTAC 4 cut(s) 757, 817, 1796, 2255
RseI CAYNNNNRTG 1 cut(s) 1314
SalI GTCGAC 2 cut(s) 326, 404
SaqAI TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
SatI GCNGC 9 cut(s) 155, 158, 175, 312, 315, 425, 1161, 1909, 2429
Sau96I GGNCC 2 cut(s) 181, 1378
SchI GAGTC 1 cut(s) 2157
ScrFI CCNGG 8 cut(s) 151, 340, 352, 386, 1382, 1808, 1962, 2407
SduI GDGCHC 3 cut(s) 1489, 1768, 2238
SfaNI GCATC 4 cut(s) 734, 1102, 1248, 2191
SfcI CTRYAG 1 cut(s) 2219
SinI GGWCC 2 cut(s) 181, 1378
SmiMI CAYNNNNRTG 1 cut(s) 1314
SmlI CTYRAG 3 cut(s) 320, 1862, 2237
SmoI CTYRAG 3 cut(s) 320, 1862, 2237
SphI GCATGC 2 cut(s) 990, 1313
SseBI AGGCCT 2 cut(s) 299, 1457
SspI AATATT 1 cut(s) 973
SspMI CTAG 3 cut(s) 813, 1157, 2370
StuI AGGCCT 2 cut(s) 299, 1457
StyD4I CCNGG 8 cut(s) 149, 338, 350, 384, 1380, 1806, 1960, 2405
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 5 cut(s) 875, 1290, 1510, 1701, 2254
TaiI ACGT 2 cut(s) 604, 783
TaqI TCGA 6 cut(s) 249, 327, 405, 594, 1052, 1541
TatI WGTACW 2 cut(s) 756, 1795
TauI GCSGC 6 cut(s) 157, 160, 177, 314, 317, 427
TfiI GAWTC 4 cut(s) 937, 1049, 2114, 2303
Tru1I TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
Tru9I TTAA 5 cut(s) 1136, 1296, 1365, 1419, 1760
TscAI CASTG 4 cut(s) 1210, 1295, 1494, 1704
TseFI GTSAC 3 cut(s) 473, 1695, 1741
TseI GCWGC 3 cut(s) 1160, 1908, 2428
Tsp45I GTSAC 3 cut(s) 473, 1695, 1741
TspRI CASTG 4 cut(s) 1210, 1295, 1494, 1704
Tth111I GACNNNGTC 2 cut(s) 332, 471
VpaK11BI GGWCC 2 cut(s) 181, 1378
XapI RAATTY 4 cut(s) 488, 1678, 1735, 2314
XceI RCATGY 7 cut(s) 591, 647, 966, 990, 1313, 1828, 2134
XcmI CCANNNNNNNNNTGG 1 cut(s) 1388
XmiI GTMKAC 3 cut(s) 327, 405, 921
XspI CTAG 3 cut(s) 813, 1157, 2370
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.