Rroxscaffold_6G00405390

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001517
Physical Location & Seq
Reverse (-)
27769316 .. 27772505
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405390.1

Sequence Viewer

Length: 882 bp
ATGAACGACTTGTTATCCAACTCCCTCTCCCAGGGCTCGCCGGACCACCATGTCATCGAGATGACCCCCTCCGATGCCTCCAGCGACCTCAAGAAGTTCTTCGAGGACGTCGACTTGATCCAGACCGAGCTCAATGACTTGCAGAAGCTCAACACCAGCCTCAGGAGCGCACACGAGCAGAGCAAGACCCTCCACAAGGCCAAGGAAGTCAAGGACCTCCGGACACGGATGGACGCTGACGTTAACCATGCCCTTAAGGCCGTCAAGCTCCTTAAGGTTCGGTTGGAGGCACTGGACCGGTCCAACGCCTCCAGCAGGAGCTTGCCTGGGTGCGGTCCGGGGTCGTCCTCGGACCGGACGAGGACGTCTGTGGTGAGTGGGTTGAGGAAGAAGCTTAAGGATTCTATGGAGAGCTTTAATGACTTGAGACAGAAGATTTCCTCCGAGTACAAGGAGACCGTTCAGAGAAGGTACTTTACGGTGACCGGAGAGAAACCGGACGACAAAACCATTGACCTTCTCATATCTACTGGCGAAAGTGAGACATTTATGCAGAAGGCAATCCAAGAGCAAGGAAGGGGCCAAGTCCTAGACACTATAAACGAGATCCAAGAGAGGCACAATGGTGTAAAAGCCATGGAGAGGAATCTGAACGAGTTGCACCAGGTGTTTCTGGACATGGCAGTCCTGGTTCAAGCTCAGGGTGAGCAGATCGACGACATCGAGCGTCACGTAGATCGAGCTAGTTCGTTCGTGCAACAAGGCACCCAGCAGTTGCAGAAGGCCAGATTCTTGCAGAAAAACACACGCAAATGGACCTGTTATGGTATCCTAATCTTGCTCATCATCACCGGAATCATATTGGCCTCCACGCTGACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

293

Amino Acids

33.08

Weight (kDa)

7.11

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin PF00804 28 - 188 1.4e-50 Syntaxin
SNARE PF05739 236 - 288 1.8e-18 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 50, 364, 683
AatII GACGTC 2 cut(s) 111, 368
AccB1I GGYRCC 1 cut(s) 764
AccI GTMKAC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 1 cut(s) 333
AclWI GGATC 2 cut(s) 112, 601
AcyI GRCGYC 2 cut(s) 108, 365
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 449, 473
AfiI CCNNNNNNNGG 7 cut(s) 31, 162, 196, 315, 332, 354, 642
AflII CTTAAG 3 cut(s) 254, 272, 395
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 695
AjnI CCWGG 4 cut(s) 30, 325, 663, 687
AleI CACNNNNGTG 1 cut(s) 624
AluBI AGCT 8 cut(s) 130, 148, 268, 321, 394, 414, 698, 743
AluI AGCT 8 cut(s) 130, 148, 268, 321, 394, 414, 698, 743
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 3 cut(s) 421, 449, 536
AlwI GGATC 2 cut(s) 112, 601
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 5 cut(s) 198, 258, 580, 783, 864
AsiGI ACCGGT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 8 cut(s) 43, 214, 295, 300, 335, 352, 580, 816
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 4 cut(s) 385, 493, 716, 841
AvaII GGWCC 7 cut(s) 43, 214, 295, 300, 335, 352, 816
AxyI CCTNAGG 1 cut(s) 161
BanI GGYRCC 1 cut(s) 764
BanII GRGCYC 2 cut(s) 38, 132
BarI GAAGNNNNNNTAC 2 cut(s) 460, 492
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 4 cut(s) 32, 327, 665, 689
BciVI GTATCC 1 cut(s) 839
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 421, 449, 536
BfaI CTAG 2 cut(s) 590, 744
BfrI CTTAAG 3 cut(s) 254, 272, 395
BfuI GTATCC 1 cut(s) 839
BglI GCCNNNNNGGC 1 cut(s) 257
Bme1390I CCNGG 5 cut(s) 32, 327, 339, 665, 689
Bme18I GGWCC 7 cut(s) 43, 214, 295, 300, 335, 352, 816
BmgT120I GGNCC 8 cut(s) 43, 214, 295, 300, 335, 352, 580, 816
BmiI GGNNCC 2 cut(s) 581, 766
BmrFI CCNGG 5 cut(s) 32, 327, 339, 665, 689
BmsI GCATC 1 cut(s) 64
BpmI CTGGAG 2 cut(s) 64, 295
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 74, 445
BpuMI CCSGG 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 733
BsaHI GRCGYC 2 cut(s) 108, 365
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 7 cut(s) 30, 31, 201, 326, 338, 348, 636
BsaWI WCCGGW 6 cut(s) 219, 297, 354, 485, 496, 851
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 7 cut(s) 31, 162, 196, 315, 332, 354, 642
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 297, 535
Bse21I CCTNAGG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 219
BseBI CCWGG 4 cut(s) 32, 327, 665, 689
BseDI CCNNGG 7 cut(s) 30, 31, 201, 326, 338, 348, 636
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 7 cut(s) 31, 162, 196, 315, 332, 354, 642
BseMII CTCAG 2 cut(s) 175, 713
BseNI ACTGG 2 cut(s) 297, 535
BseYI CCCAGC 1 cut(s) 768
BshFI GGCC 5 cut(s) 200, 260, 582, 785, 866
BshNI GGYRCC 1 cut(s) 764
BshTI ACCGGT 1 cut(s) 297
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 8 cut(s) 41, 220, 298, 338, 355, 486, 497, 852
BslI CCNNNNNNNGG 7 cut(s) 31, 162, 196, 315, 332, 354, 642
BsmAI GTCTC 3 cut(s) 421, 449, 536
BsnI GGCC 5 cut(s) 200, 260, 582, 785, 866
Bso31I GGTCTC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 38, 132
Bsp13I TCCGGA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 117, 606, 711, 736
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 1 cut(s) 333
BspANI GGCC 5 cut(s) 200, 260, 582, 785, 866
BspCNI CTCAG 2 cut(s) 174, 712
BspEI TCCGGA 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 581, 766
BspPI GGATC 2 cut(s) 112, 601
BspT107I GGYRCC 1 cut(s) 764
BspTI CTTAAG 3 cut(s) 254, 272, 395
BspTNI GGTCTC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 2 cut(s) 297, 535
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 7 cut(s) 30, 31, 201, 326, 338, 348, 636
BssMI GATC 4 cut(s) 117, 606, 711, 736
BssNI GRCGYC 2 cut(s) 108, 365
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 201, 636
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 4 cut(s) 32, 327, 665, 689
Bst4CI ACNGT 2 cut(s) 460, 481
BstACI GRCGYC 2 cut(s) 108, 365
BstAFI CTTAAG 3 cut(s) 254, 272, 395
BstBAI YACGTR 1 cut(s) 733
BstC8I GCNNGC 2 cut(s) 38, 323
BstDEI CTNAG 2 cut(s) 161, 699
BstDSI CCRYGG 1 cut(s) 636
BstEII GGTNACC 1 cut(s) 481
BstENI CCTNNNNNAGG 3 cut(s) 29, 194, 313
BstF5I GGATG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 4 cut(s) 120, 609, 714, 739
BstMAI GTCTC 3 cut(s) 421, 449, 536
BstMBI GATC 4 cut(s) 117, 606, 711, 736
BstMWI GCNNNNNNNGC 2 cut(s) 165, 257
BstNI CCWGG 4 cut(s) 32, 327, 665, 689
BstPI GGTNACC 1 cut(s) 481
BstSCI CCNGG 5 cut(s) 30, 325, 337, 663, 687
BstX2I RGATCY 1 cut(s) 606
BstYI RGATCY 1 cut(s) 606
Bsu36I CCTNAGG 1 cut(s) 161
BsuI GTATCC 1 cut(s) 839
BsuRI GGCC 5 cut(s) 200, 260, 582, 785, 866
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 38, 323
CfoI GCGC 1 cut(s) 170
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 8 cut(s) 43, 214, 295, 300, 335, 352, 580, 816
CpoI CGGWCCG 2 cut(s) 335, 352
CseI GACGC 2 cut(s) 242, 716
CsiI ACCWGGT 1 cut(s) 663
Csp6I GTAC 2 cut(s) 448, 472
CspAI ACCGGT 1 cut(s) 297
CspI CGGWCCG 2 cut(s) 335, 352
CviAII CATG 4 cut(s) 50, 248, 637, 679
CviQI GTAC 2 cut(s) 448, 472
DdeI CTNAG 2 cut(s) 161, 699
DpnI GATC 4 cut(s) 119, 608, 713, 738
DpnII GATC 4 cut(s) 117, 606, 711, 736
DraIII CACNNNGTG 1 cut(s) 667
DrdI GACNNNNNNGTC 3 cut(s) 50, 364, 683
DseDI GACNNNNNNGTC 3 cut(s) 50, 364, 683
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 201, 636
Eco24I GRGCYC 2 cut(s) 38, 132
Eco31I GGTCTC 1 cut(s) 449
Eco47I GGWCC 7 cut(s) 43, 214, 295, 300, 335, 352, 816
Eco53kI GAGCTC 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 130
EcoNI CCTNNNNNAGG 3 cut(s) 29, 194, 313
EcoO109I RGGNCCY 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 481
EcoRII CCWGG 4 cut(s) 30, 325, 663, 687
EcoT14I CCWWGG 2 cut(s) 201, 636
EcoT38I GRGCYC 2 cut(s) 38, 132
ErhI CCWWGG 2 cut(s) 201, 636
FaeI CATG 4 cut(s) 53, 251, 640, 682
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 4 cut(s) 49, 247, 636, 678
FblI GTMKAC 1 cut(s) 111
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 2 cut(s) 38, 132
FspBI CTAG 2 cut(s) 590, 744
GlaI GCGC 1 cut(s) 169
GsaI CCCAGC 1 cut(s) 772
GsuI CTGGAG 2 cut(s) 64, 295
HaeIII GGCC 5 cut(s) 200, 260, 582, 785, 866
HapII CCGG 8 cut(s) 41, 220, 298, 338, 355, 486, 497, 852
HgaI GACGC 2 cut(s) 242, 716
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 2 cut(s) 108, 365
Hin1II CATG 4 cut(s) 53, 251, 640, 682
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 112, 244
HindII GTYRAC 2 cut(s) 112, 244
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 4 cut(s) 401, 646, 789, 855
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 8 cut(s) 41, 220, 298, 338, 355, 486, 497, 852
HphI GGTGA 4 cut(s) 385, 493, 716, 841
Hpy166II GTNNAC 2 cut(s) 112, 244
Hpy188I TCNGA 5 cut(s) 73, 352, 445, 465, 651
Hpy188III TCNNGA 6 cut(s) 58, 91, 121, 163, 220, 674
Hpy8I GTNNAC 2 cut(s) 112, 244
Hpy99I CGWCG 2 cut(s) 113, 719
HpyAV CCTTC 5 cut(s) 462, 527, 550, 570, 775
HpyCH4III ACNGT 2 cut(s) 460, 481
HpyCH4IV ACGT 5 cut(s) 108, 240, 365, 732, 878
HpyCH4V TGCA 6 cut(s) 142, 553, 661, 757, 778, 796
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 257
HpyF3I CTNAG 2 cut(s) 161, 699
HpySE526I ACGT 5 cut(s) 108, 240, 365, 732, 878
Hsp92I GRCGYC 2 cut(s) 108, 365
Hsp92II CATG 4 cut(s) 53, 251, 640, 682
HspAI GCGC 1 cut(s) 168
Kpn2I TCCGGA 1 cut(s) 219
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 117, 606, 711, 736
LmnI GCTCC 3 cut(s) 165, 273, 318
LweI GCATC 1 cut(s) 64
MabI ACCWGGT 1 cut(s) 663
MaeI CTAG 2 cut(s) 590, 744
MaeII ACGT 5 cut(s) 108, 240, 365, 732, 878
MaeIII GTNAC 2 cut(s) 481, 728
MalI GATC 4 cut(s) 119, 608, 713, 738
MboI GATC 4 cut(s) 117, 606, 711, 736
MboII GAAGA 3 cut(s) 91, 400, 445
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 2 cut(s) 38, 132
MmeI TCCRAC 3 cut(s) 42, 264, 327
MroI TCCGGA 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 5 cut(s) 243, 255, 273, 396, 417
MslI CAYNNNNRTG 3 cut(s) 59, 624, 811
MspCI CTTAAG 3 cut(s) 254, 272, 395
MspI CCGG 8 cut(s) 41, 220, 298, 338, 355, 486, 497, 852
MspR9I CCNGG 5 cut(s) 32, 327, 339, 665, 689
MvaI CCWGG 4 cut(s) 32, 327, 665, 689
MwoI GCNNNNNNNGC 2 cut(s) 165, 257
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 636
NdeII GATC 4 cut(s) 117, 606, 711, 736
NlaIII CATG 4 cut(s) 53, 251, 640, 682
NlaIV GGNNCC 2 cut(s) 581, 766
NmuCI GTSAC 2 cut(s) 481, 728
OliI CACNNNNGTG 1 cut(s) 624
PasI CCCWGGG 1 cut(s) 31
PcsI WCGNNNNNNNCGW 4 cut(s) 108, 356, 720, 729
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 4 cut(s) 401, 646, 789, 855
PinAI ACCGGT 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 733
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 4 cut(s) 30, 325, 663, 687
PspEI GGTNACC 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 768
PspGI CCWGG 4 cut(s) 30, 325, 663, 687
PspN4I GGNNCC 2 cut(s) 581, 766
PspPI GGNCC 8 cut(s) 43, 214, 295, 300, 335, 352, 580, 816
PspPPI RGGWCCY 1 cut(s) 214
PsuI RGATCY 1 cut(s) 606
RsaI GTAC 2 cut(s) 449, 473
RsaNI GTAC 2 cut(s) 448, 472
RseI CAYNNNNRTG 3 cut(s) 59, 624, 811
Rsr2I CGGWCCG 2 cut(s) 335, 352
RsrII CGGWCCG 2 cut(s) 335, 352
SacI GAGCTC 1 cut(s) 132
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 5 cut(s) 243, 255, 273, 396, 417
Sau3AI GATC 4 cut(s) 117, 606, 711, 736
Sau96I GGNCC 8 cut(s) 43, 214, 295, 300, 335, 352, 580, 816
ScrFI CCNGG 5 cut(s) 32, 327, 339, 665, 689
SduI GDGCHC 2 cut(s) 38, 132
SexAI ACCWGGT 1 cut(s) 663
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 7 cut(s) 43, 214, 295, 300, 335, 352, 816
SmiMI CAYNNNNRTG 3 cut(s) 59, 624, 811
SmlI CTYRAG 5 cut(s) 89, 254, 272, 395, 424
SmoI CTYRAG 5 cut(s) 89, 254, 272, 395, 424
SsiI CCGC 1 cut(s) 333
SspMI CTAG 2 cut(s) 590, 744
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 5 cut(s) 30, 325, 337, 663, 687
StyI CCWWGG 2 cut(s) 201, 636
TaaI ACNGT 2 cut(s) 460, 481
TaiI ACGT 5 cut(s) 111, 243, 368, 735, 881
TaqI TCGA 6 cut(s) 57, 102, 111, 714, 723, 739
TaqII GACCGA 1 cut(s) 140
TatI WGTACW 1 cut(s) 447
TfiI GAWTC 4 cut(s) 401, 646, 789, 855
Tru1I TTAA 5 cut(s) 243, 255, 273, 396, 417
Tru9I TTAA 5 cut(s) 243, 255, 273, 396, 417
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 2 cut(s) 481, 728
Tsp45I GTSAC 2 cut(s) 481, 728
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 297
Vha464I CTTAAG 3 cut(s) 254, 272, 395
VpaK11BI GGWCC 7 cut(s) 43, 214, 295, 300, 335, 352, 816
XagI CCTNNNNNAGG 3 cut(s) 29, 194, 313
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 590, 744
ZraI GACGTC 2 cut(s) 109, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.