Rorug02G0203100

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001517
Physical Location & Seq
Reverse (-)
19009053 .. 19010827
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0203100.1

Sequence Viewer

Length: 840 bp
ATGCATTCAATCGTGAGGAATGTGAAAGAATACAAGAGAAAGGCAGTTGTGAAGGACAAGGACGACGACTTTGAGTATGACACACCGGAGATCTTGAAGACTTATGGAAAGAAAAGAAAGACTGCTGCACAGGAACAGCCAAAGCAGAAAAAGAAAGCAGAACCGAAGCCGGCAACGAAACTGCAGAAAGGGAAACAAGTGCAGCACCCAATGCAAATAAGAGATGTGAATTGTGAAAAGTACACATGGAAAACATTAAAGCCTGAAGTAGCAAAACACTACCAGCAATTCTTTGAGATGGTGGATGACAATACATATGTCTACTGGACAAGTAAAAATGGAATAATAAGGGTAACCAGGGCAGACATGAAGATTATCGTACAAGAGCAAGATCTGGATATTGATGTGGTTAAGGCTTATACTGAAATGTTGCAGAAGGAACTGAAAGAAAGGAAGACTCAGATTGGATTACTGAACATCGAAGCAGCACACATAAGGAGGTTCATCCGCGACGTGAAGATGACAGGGAGAATATTTCTAGATGACAGCCAGGATCATGAGAACACAAGAGAGAAGTGCAAAGGTGAGAACAATAAAGGAGACTTTGTCTCCGTGGTTGAAGAAATGACACAAAGAGAGAAAGAGGTCAGAAGGGAGGACTGTGGACCTTTTATGATCCATTTCATGGAAAGCATAATTCACGGAGTGGAACCCAGCAAGAAGAAAGGTGATGACATGAGGAAAACAATTTTTGAGAGGTTTGCAAAGGAGGAATGTGGTTGCAGCGTCGAAAGATACCTTGCTGAAACTGCACATGCTGTAGGAGAGCCAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

279

Amino Acids

32.86

Weight (kDa)

9.01

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 510
AciI CCGC 1 cut(s) 508
AclWI GGATC 2 cut(s) 561, 670
AcuI CTGAAG 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 2 cut(s) 242, 381
AfiI CCNNNNNNNGG 1 cut(s) 685
AgsI TTSAA 3 cut(s) 9, 97, 620
AjiI CACGTC 1 cut(s) 514
AjnI CCWGG 2 cut(s) 356, 549
Alw26I GTCTC 2 cut(s) 594, 613
AlwI GGATC 2 cut(s) 561, 670
ApeKI GCWGC 4 cut(s) 125, 202, 485, 783
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 596, 740
AvaII GGWCC 1 cut(s) 665
BbsI GAAGAC 2 cut(s) 104, 461
BbvI GCAGC 4 cut(s) 112, 214, 497, 795
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 358, 551
BcoDI GTCTC 2 cut(s) 594, 613
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 2 cut(s) 182, 819
BglII AGATCT 2 cut(s) 90, 391
BisI GCNGC 4 cut(s) 126, 203, 486, 784
BlsI GCNGC 4 cut(s) 127, 204, 487, 785
Bme1390I CCNGG 2 cut(s) 358, 551
Bme18I GGWCC 1 cut(s) 665
BmgBI CACGTC 1 cut(s) 514
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 2 cut(s) 358, 551
BpiI GAAGAC 2 cut(s) 104, 461
BsaJI CCNNGG 2 cut(s) 357, 612
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 591, 593, 621, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 685
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 358, 551
BseDI CCNNGG 2 cut(s) 357, 612
BseGI GGATG 2 cut(s) 310, 504
BseLI CCNNNNNNNGG 1 cut(s) 685
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 4 cut(s) 112, 214, 497, 795
BseYI CCCAGC 1 cut(s) 713
BsgI GTGCAG 3 cut(s) 111, 221, 795
Bsh1236I CGCG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 86, 170
BslI CCNNNNNNNGG 1 cut(s) 685
BsmAI GTCTC 2 cut(s) 594, 613
BsmI GAATGC 1 cut(s) 4
Bsp143I GATC 4 cut(s) 90, 391, 553, 675
BspACI CCGC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 711
BspMAI CTGCAG 1 cut(s) 186
BspPI GGATC 2 cut(s) 561, 670
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 357, 612
BssMI GATC 4 cut(s) 90, 391, 553, 675
Bst2UI CCWGG 2 cut(s) 358, 551
Bst4CI ACNGT 1 cut(s) 662
BstAPI GCANNNNNTGC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 612
BstEII GGTNACC 1 cut(s) 352
BstF5I GGATG 2 cut(s) 310, 504
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 4 cut(s) 93, 394, 556, 678
BstMAI GTCTC 2 cut(s) 594, 613
BstMBI GATC 4 cut(s) 90, 391, 553, 675
BstMWI GCNNNNNNNGC 2 cut(s) 211, 809
BstNI CCWGG 2 cut(s) 358, 551
BstNSI RCATGY 1 cut(s) 818
BstPI GGTNACC 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 356, 549
BstSFI CTRYAG 2 cut(s) 182, 819
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 4 cut(s) 112, 214, 497, 795
BstV2I GAAGAC 2 cut(s) 104, 461
BstX2I RGATCY 2 cut(s) 90, 391
BstYI RGATCY 2 cut(s) 90, 391
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 514
BtsCI GGATG 2 cut(s) 310, 504
Cac8I GCNNGC 1 cut(s) 171
CciI TCATGA 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 665
CseI GACGC 1 cut(s) 775
Csp6I GTAC 2 cut(s) 241, 380
CviAII CATG 6 cut(s) 246, 367, 557, 685, 736, 815
CviJI RGCY 6 cut(s) 139, 169, 262, 416, 549, 829
CviKI_1 RGCY 6 cut(s) 139, 169, 262, 416, 549, 829
CviQI GTAC 2 cut(s) 241, 380
DdeI CTNAG 1 cut(s) 459
DpnI GATC 4 cut(s) 92, 393, 555, 677
DpnII GATC 4 cut(s) 90, 391, 553, 675
DraIII CACNNNGTG 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 352
EcoRII CCWGG 2 cut(s) 356, 549
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 6 cut(s) 249, 370, 560, 688, 739, 818
FatI CATG 6 cut(s) 245, 366, 556, 684, 735, 814
FauNDI CATATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 126, 203, 486, 784
FokI GGATG 2 cut(s) 317, 491
Fsp4HI GCNGC 4 cut(s) 126, 203, 486, 784
FspBI CTAG 1 cut(s) 539
GluI GCNGC 4 cut(s) 126, 203, 486, 784
GsaI CCCAGC 1 cut(s) 717
HapII CCGG 2 cut(s) 86, 170
HgaI GACGC 1 cut(s) 775
Hin1II CATG 6 cut(s) 249, 370, 560, 688, 739, 818
HinfI GANTC 1 cut(s) 457
HpaII CCGG 2 cut(s) 86, 170
HphI GGTGA 2 cut(s) 596, 740
Hpy166II GTNNAC 3 cut(s) 243, 322, 665
Hpy188I TCNGA 2 cut(s) 462, 650
Hpy188III TCNNGA 5 cut(s) 13, 94, 395, 539, 557
Hpy8I GTNNAC 3 cut(s) 243, 322, 665
Hpy99I CGWCG 3 cut(s) 68, 515, 791
HpyAV CCTTC 3 cut(s) 46, 430, 645
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 513
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 809
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 6 cut(s) 249, 370, 560, 688, 739, 818
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 90, 391, 553, 675
Lsp1109I GCAGC 4 cut(s) 112, 214, 497, 795
MaeI CTAG 1 cut(s) 539
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 352
MalI GATC 4 cut(s) 92, 393, 555, 677
MboI GATC 4 cut(s) 90, 391, 553, 675
MboII GAAGA 6 cut(s) 109, 382, 466, 529, 632, 733
MflI RGATCY 2 cut(s) 90, 391
MluCI AATT 4 cut(s) 229, 287, 696, 747
MlyI GAGTC 1 cut(s) 451
MnlI CCTC 7 cut(s) 9, 492, 637, 649, 732, 750, 763
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 169
MseI TTAA 2 cut(s) 257, 411
MspI CCGG 2 cut(s) 86, 170
MspR9I CCNGG 2 cut(s) 358, 551
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 2 cut(s) 358, 551
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 211, 809
NaeI GCCGGC 1 cut(s) 171
NdeI CATATG 1 cut(s) 316
NdeII GATC 4 cut(s) 90, 391, 553, 675
NgoMIV GCCGGC 1 cut(s) 169
NlaIII CATG 6 cut(s) 249, 370, 560, 688, 739, 818
NlaIV GGNNCC 1 cut(s) 711
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 818
PagI TCATGA 1 cut(s) 556
PctI GAATGC 1 cut(s) 4
PdiI GCCGGC 1 cut(s) 171
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 685
PkrI GCNGC 4 cut(s) 127, 204, 487, 785
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 356, 549
PspEI GGTNACC 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 713
PspGI CCWGG 2 cut(s) 356, 549
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 186
PsuI RGATCY 2 cut(s) 90, 391
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 2 cut(s) 242, 381
RsaNI GTAC 2 cut(s) 241, 380
SaqAI TTAA 2 cut(s) 257, 411
SatI GCNGC 4 cut(s) 126, 203, 486, 784
Sau3AI GATC 4 cut(s) 90, 391, 553, 675
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 358, 551
SetI ASST 8 cut(s) 503, 516, 586, 648, 670, 730, 761, 801
SfcI CTRYAG 2 cut(s) 182, 819
SinI GGWCC 1 cut(s) 665
Sse9I AATT 4 cut(s) 229, 287, 696, 747
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 534
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 2 cut(s) 356, 549
TaaI ACNGT 1 cut(s) 662
TaiI ACGT 1 cut(s) 516
TaqI TCGA 2 cut(s) 480, 789
TasI AATT 4 cut(s) 229, 287, 696, 747
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 2 cut(s) 257, 411
Tru9I TTAA 2 cut(s) 257, 411
TseI GCWGC 4 cut(s) 125, 202, 485, 783
TspDTI ATGAA 3 cut(s) 383, 493, 673
TspGWI ACGGA 2 cut(s) 601, 717
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 685
VpaK11BI GGWCC 1 cut(s) 665
XbaI TCTAGA 1 cut(s) 538
XceI RCATGY 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 539
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.