Prupe.7G093400_v2.0.a1

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001517
Physical Location & Seq
Reverse (-)
12579323 .. 12581503
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G093400.1

Sequence Viewer

Length: 882 bp
ATGAACGACTTGCTCTCAAGCTCCTTCTCAGGGGCCTCGCCGGAACACCATGTCATCGAAATGACCCCTTCGAAAGGTGACGACCTCGGCAAGTTCTTCCAGGACGTCGACGCTGTCCAGAGCGAGCTCGACGAGCTGCAGAAGCTCAACAAAAGTCTTCGGAGCTCCCACGAGCAGAGCAAGACCCTCCACAACGCCAAGGCTGTCAAGGAGCTCAGAACCCGCATGGACGCTGACGTCCACCTCGCCTTAAAGAAAGCGAAGATCCTTAAGGTGAGGTTGGACGCCTTGGATCGGTCCAACGCCGCCAACCGGAGCCTGCCTGGCTGCGGCCCCGGATCATCGTCGGACCGGACAAGGACGTCTGTGGTCAACGGGCTGAGGAAGAAGCTCAAGGATTCTATGGATAGCTTTAATGACTTGAGGCAGAAGATATCGTCTGAGCATAGAGAGACTGTTCAGCGTAGGTACTTTACCGTTACCGGAGACAACCCTGATGAGAAAACCGTTGACCTTCTTATCTCCACCGGTGAAAGCGAGACATTTTTGCAGAAGGCAATCCAAGAGCAAGGAAGAGGGAGGGTTCTGGACACCATATCCGAGATCCAAGAGAGGCATGATGGTGTGAAAGCTATGGAGAGGAATCTGAATGAGCTGCACCAGGTGTTCATGGACATGGCAGTTCTGGTGCAAGCTCAAGGTGAGCAGCTGGACGACATTCAGAGCCACGTGGAGCGAGCTAATTCGTATGTGCATGCCGGCAATCAGCAGTTGCAGAAGGCCAGGTTCTTGCAGAAAAACACCCGAAAATGGACCTGCTATGGCATCATAATCTTGCTCATCATCGTCGGCATTATTTTGGCCTCAACGCTGCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

294

Amino Acids

32.91

Weight (kDa)

7.82

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 236, 361
AatII GACGTC 3 cut(s) 108, 240, 365
Acc36I ACCTGC 1 cut(s) 824
AccI GTMKAC 1 cut(s) 108
AciI CCGC 3 cut(s) 223, 306, 330
AclWI GGATC 4 cut(s) 259, 300, 346, 598
AcvI CACGTG 1 cut(s) 730
AcyI GRCGYC 4 cut(s) 105, 237, 285, 362
AdeI CACNNNGTG 1 cut(s) 664
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 6 cut(s) 30, 74, 294, 312, 329, 810
AflII CTTAAG 1 cut(s) 269
AgeI ACCGGT 1 cut(s) 527
AjnI CCWGG 4 cut(s) 99, 322, 660, 782
Alw21I GWGCWC 3 cut(s) 129, 167, 216
Alw26I GTCTC 3 cut(s) 446, 480, 533
AlwI GGATC 4 cut(s) 259, 300, 346, 598
AoxI GGCC 4 cut(s) 33, 331, 780, 861
ApeKI GCWGC 5 cut(s) 136, 327, 655, 706, 871
AsiGI ACCGGT 1 cut(s) 527
AspS9I GGNCC 5 cut(s) 33, 297, 332, 349, 813
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 4 cut(s) 89, 286, 542, 713
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 3 cut(s) 297, 349, 813
BanII GRGCYC 3 cut(s) 129, 167, 216
BauI CACGAG 1 cut(s) 170
BbrPI CACGTG 1 cut(s) 730
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 3 cut(s) 129, 167, 216
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 5 cut(s) 123, 314, 642, 718, 858
BccI CCATC 1 cut(s) 614
BciT130I CCWGG 4 cut(s) 101, 324, 662, 784
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 3 cut(s) 446, 480, 533
BfmI CTRYAG 1 cut(s) 137
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 7 cut(s) 137, 306, 328, 331, 656, 707, 872
BlsI GCNGC 7 cut(s) 138, 307, 329, 332, 657, 708, 873
Bme1390I CCNGG 5 cut(s) 101, 324, 336, 662, 784
Bme18I GGWCC 3 cut(s) 297, 349, 813
BmgT120I GGNCC 5 cut(s) 33, 297, 332, 349, 813
BmiI GGNNCC 3 cut(s) 34, 317, 334
BmrFI CCNGG 5 cut(s) 101, 324, 336, 662, 784
BmsI GCATC 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 377, 442, 681
BpuMI CCSGG 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 730
BsaHI GRCGYC 4 cut(s) 105, 237, 285, 362
BsaJI CCNNGG 4 cut(s) 85, 198, 288, 334
BsaWI WCCGGW 4 cut(s) 312, 351, 482, 527
Bsc4I CCNNNNNNNGG 6 cut(s) 30, 74, 294, 312, 329, 810
Bse118I RCCGGY 2 cut(s) 527, 758
BseBI CCWGG 4 cut(s) 101, 324, 662, 784
BseDI CCNNGG 4 cut(s) 85, 198, 288, 334
BseLI CCNNNNNNNGG 6 cut(s) 30, 74, 294, 312, 329, 810
BseMII CTCAG 4 cut(s) 42, 229, 371, 432
BseXI GCAGC 5 cut(s) 123, 314, 642, 718, 858
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 4 cut(s) 35, 333, 782, 863
BshTI ACCGGT 1 cut(s) 527
BsiHKAI GWGCWC 3 cut(s) 129, 167, 216
BsiSI CCGG 7 cut(s) 41, 313, 336, 352, 483, 528, 759
BslI CCNNNNNNNGG 6 cut(s) 30, 74, 294, 312, 329, 810
BsmAI GTCTC 3 cut(s) 446, 480, 533
BsnI GGCC 4 cut(s) 35, 333, 782, 863
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 3 cut(s) 129, 167, 216
Bsp143I GATC 4 cut(s) 264, 292, 338, 603
BspACI CCGC 3 cut(s) 223, 306, 330
BspANI GGCC 4 cut(s) 35, 333, 782, 863
BspCNI CTCAG 4 cut(s) 41, 228, 372, 433
BspLI GGNNCC 3 cut(s) 34, 317, 334
BspMAI CTGCAG 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 4 cut(s) 259, 300, 346, 598
BspT104I TTCGAA 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 527, 758
BssAI RCCGGY 2 cut(s) 527, 758
BssECI CCNNGG 4 cut(s) 85, 198, 288, 334
BssMI GATC 4 cut(s) 264, 292, 338, 603
BssNI GRCGYC 4 cut(s) 105, 237, 285, 362
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 198, 288
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 4 cut(s) 101, 324, 662, 784
Bst4CI ACNGT 3 cut(s) 457, 478, 508
Bst6I CTCTTC 1 cut(s) 568
BstACI GRCGYC 4 cut(s) 105, 237, 285, 362
BstAFI CTTAAG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 730
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 6 cut(s) 125, 320, 693, 738, 756, 760
BstDEI CTNAG 4 cut(s) 28, 215, 380, 441
BstENI CCTNNNNNAGG 1 cut(s) 72
BstKTI GATC 4 cut(s) 267, 295, 341, 606
BstMAI GTCTC 3 cut(s) 446, 480, 533
BstMBI GATC 4 cut(s) 264, 292, 338, 603
BstMWI GCNNNNNNNGC 3 cut(s) 133, 142, 324
BstNI CCWGG 4 cut(s) 101, 324, 662, 784
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 5 cut(s) 99, 322, 334, 660, 782
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 5 cut(s) 123, 314, 642, 718, 858
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 2 cut(s) 264, 603
BstYI RGATCY 2 cut(s) 264, 603
BsuRI GGCC 4 cut(s) 35, 333, 782, 863
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 6 cut(s) 125, 320, 693, 738, 756, 760
Cfr10I RCCGGY 2 cut(s) 527, 758
Cfr13I GGNCC 5 cut(s) 33, 297, 332, 349, 813
CpoI CGGWCCG 1 cut(s) 349
CseI GACGC 3 cut(s) 119, 239, 293
CsiI ACCWGGT 1 cut(s) 660
Csp6I GTAC 1 cut(s) 469
CspAI ACCGGT 1 cut(s) 527
CspI CGGWCCG 1 cut(s) 349
CviAII CATG 6 cut(s) 50, 226, 617, 670, 676, 755
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 4 cut(s) 28, 215, 380, 441
DpnI GATC 4 cut(s) 266, 294, 340, 605
DpnII GATC 4 cut(s) 264, 292, 338, 603
DraIII CACNNNGTG 1 cut(s) 664
DrdI GACNNNNNNGTC 2 cut(s) 236, 361
DseDI GACNNNNNNGTC 2 cut(s) 236, 361
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 3 cut(s) 127, 165, 214
Eco130I CCWWGG 2 cut(s) 198, 288
Eco24I GRGCYC 3 cut(s) 129, 167, 216
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 3 cut(s) 297, 349, 813
Eco53kI GAGCTC 3 cut(s) 127, 165, 214
Eco72I CACGTG 1 cut(s) 730
EcoICRI GAGCTC 3 cut(s) 127, 165, 214
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 4 cut(s) 99, 322, 660, 782
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 198, 288
EcoT38I GRGCYC 3 cut(s) 129, 167, 216
ErhI CCWWGG 2 cut(s) 198, 288
FaeI CATG 6 cut(s) 53, 229, 620, 673, 679, 758
FatI CATG 6 cut(s) 49, 225, 616, 669, 675, 754
FauI CCCGC 1 cut(s) 230
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 7 cut(s) 137, 306, 328, 331, 656, 707, 872
FriOI GRGCYC 3 cut(s) 129, 167, 216
Fsp4HI GCNGC 7 cut(s) 137, 306, 328, 331, 656, 707, 872
GluI GCNGC 7 cut(s) 137, 306, 328, 331, 656, 707, 872
HaeIII GGCC 4 cut(s) 35, 333, 782, 863
HapII CCGG 7 cut(s) 41, 313, 336, 352, 483, 528, 759
HgaI GACGC 3 cut(s) 119, 239, 293
Hin1I GRCGYC 4 cut(s) 105, 237, 285, 362
Hin1II CATG 6 cut(s) 53, 229, 620, 673, 679, 758
HincII GTYRAC 3 cut(s) 109, 373, 511
HindII GTYRAC 3 cut(s) 109, 373, 511
HinfI GANTC 2 cut(s) 398, 643
HpaII CCGG 7 cut(s) 41, 313, 336, 352, 483, 528, 759
HphI GGTGA 4 cut(s) 89, 286, 542, 713
Hpy166II GTNNAC 4 cut(s) 109, 241, 373, 511
Hpy188I TCNGA 7 cut(s) 162, 218, 349, 442, 601, 648, 723
Hpy188III TCNNGA 2 cut(s) 118, 587
Hpy8I GTNNAC 4 cut(s) 109, 241, 373, 511
Hpy99I CGWCG 5 cut(s) 110, 113, 134, 349, 851
HpyAV CCTTC 5 cut(s) 34, 78, 524, 547, 772
HpyCH4III ACNGT 3 cut(s) 457, 478, 508
HpyCH4IV ACGT 4 cut(s) 105, 237, 362, 729
HpyCH4V TGCA 7 cut(s) 139, 550, 658, 691, 754, 775, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 142, 324
HpyF3I CTNAG 4 cut(s) 28, 215, 380, 441
HpySE526I ACGT 4 cut(s) 105, 237, 362, 729
Hsp92I GRCGYC 4 cut(s) 105, 237, 285, 362
Hsp92II CATG 6 cut(s) 53, 229, 620, 673, 679, 758
KroI GCCGGC 1 cut(s) 758
KroNI GCCGGC 1 cut(s) 760
Kzo9I GATC 4 cut(s) 264, 292, 338, 603
LmnI GCTCC 6 cut(s) 26, 162, 170, 211, 315, 733
Lsp1109I GCAGC 5 cut(s) 123, 314, 642, 718, 858
LweI GCATC 1 cut(s) 834
MabI ACCWGGT 1 cut(s) 660
MaeII ACGT 4 cut(s) 105, 237, 362, 729
MaeIII GTNAC 2 cut(s) 77, 478
MalI GATC 4 cut(s) 266, 294, 340, 605
MboI GATC 4 cut(s) 264, 292, 338, 603
MboII GAAGA 6 cut(s) 88, 149, 274, 397, 442, 585
MflI RGATCY 2 cut(s) 264, 603
MhlI GDGCHC 3 cut(s) 129, 167, 216
MluCI AATT 2 cut(s) 742, 877
MmeI TCCRAC 3 cut(s) 261, 324, 327
MroNI GCCGGC 1 cut(s) 758
MseI TTAA 4 cut(s) 251, 270, 414, 880
MslI CAYNNNNRTG 3 cut(s) 59, 621, 674
MspA1I CMGCKG 1 cut(s) 709
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 7 cut(s) 41, 313, 336, 352, 483, 528, 759
MspR9I CCNGG 5 cut(s) 101, 324, 336, 662, 784
MvaI CCWGG 4 cut(s) 101, 324, 662, 784
MwoI GCNNNNNNNGC 3 cut(s) 133, 142, 324
NaeI GCCGGC 1 cut(s) 760
NciI CCSGG 1 cut(s) 336
NdeII GATC 4 cut(s) 264, 292, 338, 603
NgoMIV GCCGGC 1 cut(s) 758
NlaIII CATG 6 cut(s) 53, 229, 620, 673, 679, 758
NlaIV GGNNCC 3 cut(s) 34, 317, 334
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 758
NspV TTCGAA 1 cut(s) 71
PaeI GCATGC 1 cut(s) 758
PdiI GCCGGC 1 cut(s) 760
PfeI GAWTC 2 cut(s) 398, 643
PflFI GACNNNGTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 7 cut(s) 138, 307, 329, 332, 657, 708, 873
PmaCI CACGTG 1 cut(s) 730
PmlI CACGTG 1 cut(s) 730
Ppu21I YACGTR 1 cut(s) 730
Psp124BI GAGCTC 3 cut(s) 129, 167, 216
Psp6I CCWGG 4 cut(s) 99, 322, 660, 782
PspCI CACGTG 1 cut(s) 730
PspGI CCWGG 4 cut(s) 99, 322, 660, 782
PspN4I GGNNCC 3 cut(s) 34, 317, 334
PspPI GGNCC 5 cut(s) 33, 297, 332, 349, 813
PstI CTGCAG 1 cut(s) 141
PsuI RGATCY 2 cut(s) 264, 603
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 3 cut(s) 59, 621, 674
Rsr2I CGGWCCG 1 cut(s) 349
RsrII CGGWCCG 1 cut(s) 349
SacI GAGCTC 3 cut(s) 129, 167, 216
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 4 cut(s) 251, 270, 414, 880
SatI GCNGC 7 cut(s) 137, 306, 328, 331, 656, 707, 872
Sau3AI GATC 4 cut(s) 264, 292, 338, 603
Sau96I GGNCC 5 cut(s) 33, 297, 332, 349, 813
ScrFI CCNGG 5 cut(s) 101, 324, 336, 662, 784
SduI GDGCHC 3 cut(s) 129, 167, 216
SexAI ACCWGGT 1 cut(s) 660
SfaNI GCATC 1 cut(s) 834
SfcI CTRYAG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 71
SgrAI CRCCGGYG 1 cut(s) 527
SgrDI CGTCGACG 1 cut(s) 107
SinI GGWCC 3 cut(s) 297, 349, 813
SmiMI CAYNNNNRTG 3 cut(s) 59, 621, 674
SmlI CTYRAG 5 cut(s) 16, 269, 392, 421, 696
SmoI CTYRAG 5 cut(s) 16, 269, 392, 421, 696
SphI GCATGC 1 cut(s) 758
Sse9I AATT 2 cut(s) 742, 877
SsiI CCGC 3 cut(s) 223, 306, 330
SstI GAGCTC 3 cut(s) 129, 167, 216
StyD4I CCNGG 5 cut(s) 99, 322, 334, 660, 782
StyI CCWWGG 2 cut(s) 198, 288
TaaI ACNGT 3 cut(s) 457, 478, 508
TaiI ACGT 4 cut(s) 108, 240, 365, 732
TaqI TCGA 4 cut(s) 57, 71, 108, 129
TaqII GACCGA 1 cut(s) 285
TasI AATT 2 cut(s) 742, 877
TauI GCSGC 2 cut(s) 308, 333
TfiI GAWTC 2 cut(s) 398, 643
Tru1I TTAA 4 cut(s) 251, 270, 414, 880
Tru9I TTAA 4 cut(s) 251, 270, 414, 880
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 5 cut(s) 136, 327, 655, 706, 871
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 17, 658
Tth111I GACNNNGTC 1 cut(s) 113
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 297, 349, 813
XagI CCTNNNNNAGG 1 cut(s) 72
XceI RCATGY 1 cut(s) 758
XmiI GTMKAC 1 cut(s) 108
ZraI GACGTC 3 cut(s) 106, 238, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.